PMC Links for GEO Profiles (Select 35549314) - PMC

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Items: 15

Select item 41238551.

The binary protein-protein interaction landscape of Escherichia coli

Seesandra V. Rajagopala, Patricia Sikorski, Ashwani Kumar, Roberto Mosca, James Vlasblom, Roland Arnold, Jonathan Franca-Koh, Suman B. Pakala, Sadhna Phanse, Arnaud Ceol, Roman Häuser, Gabriella Siszler, Stefan Wuchty, Andrew Emili, Mohan Babu, Patrick Aloy, Rembert Pieper, Peter Uetz

Nat Biotechnol. Author manuscript; available in PMC 2014 Sep 1.

Published in final edited form as: Nat Biotechnol. 2014 Mar; 32(3): 285–290. Published online 2014 Feb 23. doi: 10.1038/nbt.2831

PMCID:: PMC4123855

Abstract Article PDF–1.1M

Select item 28010612.

Switching from an induced fit to a lock and key mechanism in an aminoacyl-tRNA synthetase with modified specificity

Emmanuelle Schmitt, I. Caglar Tanrikulu, Tae Hyeon Yoo, Michel Panvert, David A. Tirrell, Yves Mechulam

J Mol Biol. Author manuscript; available in PMC 2010 Dec 18.

Published in final edited form as: J Mol Biol. 2009 Dec 18; 394(5): 843–851. Published online 2009 Oct 23. doi: 10.1016/j.jmb.2009.10.016

PMCID:: PMC2801061

Abstract Article PDF–1.5M

Select item 27412433.

Discovery of Escherichia coli methionyl-tRNA synthetase mutants for efficient labeling of proteins with azidonorleucine in vivo

I. Caglar Tanrikulu, Emmanuelle Schmitt, Yves Mechulam, William A. Goddard, III, David A. Tirrell

Proc Natl Acad Sci U S A. 2009 Sep 8; 106(36): 15285–15290. Published online 2009 Aug 17. doi: 10.1073/pnas.0905735106

PMCID:: PMC2741243

Abstract Article PDF–921K

Select item 22865614.

Selectivity and specificity of substrate binding in methionyl-tRNA synthetase

Deepshikha Datta, Nagarajan Vaidehi, Deqiang Zhang, William A. Goddard, III

Protein Sci. 2004 Oct; 13(10): 2693–2705. doi: 10.1110/ps.04792204

PMCID:: PMC2286561

Abstract Article PDF–247K

Select item 20004075.

A study of communication pathways in methionyl- tRNA synthetase by molecular dynamics simulations and structure network analysis

Amit Ghosh, Saraswathi Vishveshwara

Proc Natl Acad Sci U S A. 2007 Oct 2; 104(40): 15711–15716. Published online 2007 Sep 26. doi: 10.1073/pnas.0704459104

PMCID:: PMC2000407

Abstract Article PDF–958K

Select item 16814826.

Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection

Tomoya Baba, Takeshi Ara, Miki Hasegawa, Yuki Takai, Yoshiko Okumura, Miki Baba, Kirill A Datsenko, Masaru Tomita, Barry L Wanner, Hirotada Mori

Mol Syst Biol. 2006; 2: 2006.0008. Published online 2006 Feb 21. doi: 10.1038/msb4100050

PMCID:: PMC1681482

Abstract Article PDF–400K

Select item 16814817.

Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110

Koji Hayashi, Naoki Morooka, Yoshihiro Yamamoto, Katsutoshi Fujita, Katsumi Isono, Sunju Choi, Eiichi Ohtsubo, Tomoya Baba, Barry L Wanner, Hirotada Mori, Takashi Horiuchi

Mol Syst Biol. 2006; 2: 2006.0007. Published online 2006 Feb 21. doi: 10.1038/msb4100049

PMCID:: PMC1681481

Abstract Article PDF–141K

Select item 14570528.

Large-scale identification of protein–protein interaction of Escherichia coli K-12

Mohammad Arifuzzaman, Maki Maeda, Aya Itoh, Kensaku Nishikata, Chiharu Takita, Rintaro Saito, Takeshi Ara, Kenji Nakahigashi, Hsuan-Cheng Huang, Aki Hirai, Kohei Tsuzuki, Seira Nakamura, Mohammad Altaf-Ul-Amin, Taku Oshima, Tomoya Baba, Natsuko Yamamoto, Tomoyo Kawamura, Tomoko Ioka-Nakamichi, Masanari Kitagawa, Masaru Tomita, Shigehiko Kanaya, Chieko Wada, Hirotada Mori

Genome Res. 2006 May; 16(5): 686–691. doi: 10.1101/gr.4527806

PMCID:: PMC1457052

Abstract Article PDF–536K

Select item 13252009.

Escherichia coli K-12: a cooperatively developed annotation snapshot—2005

Monica Riley, Takashi Abe, Martha B. Arnaud, Mary K.B. Berlyn, Frederick R. Blattner, Roy R. Chaudhuri, Jeremy D. Glasner, Takashi Horiuchi, Ingrid M. Keseler, Takehide Kosuge, Hirotada Mori, Nicole T. Perna, Guy Plunkett, III, Kenneth E. Rudd, Margrethe H. Serres, Gavin H. Thomas, Nicholas R. Thomson, David Wishart, Barry L. Wanner

Nucleic Acids Res. 2006; 34(1): 1–9. Published online 2006 Jan 5. doi: 10.1093/nar/gkj405