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Items: 15

1.
Optimized fragmentation schemes and data analysis strategies for proteome-wide cross-link identification
Fan Liu, Philip Lössl, Richard Scheltema, Rosa Viner, Albert J. R. Heck
Nat Commun. 2017; 8: 15473. Published online 2017 May 19. doi: 10.1038/ncomms15473
PMCID:
PMC5454533
AbstractArticlePDF–1.5M
2.
Protein L5 is crucial for in vivo assembly of the bacterial 50S ribosomal subunit central protuberance
Alexey P. Korepanov, Anna V. Korobeinikova, Sergey A. Shestakov, Maria B. Garber, George M. Gongadze
Nucleic Acids Res. 2012 Oct; 40(18): 9153–9159. Published online 2012 Jul 20. doi: 10.1093/nar/gks676
PMCID:
PMC3467071
AbstractArticlePDF–4.3M
3.
YajL, Prokaryotic Homolog of Parkinsonism-associated Protein DJ-1, Functions as a Covalent Chaperone for Thiol Proteome
Hai-Tuong Le, Valérie Gautier, Fatoum Kthiri, Abderrahim Malki, Nadia Messaoudi, Mouadh Mihoub, Ahmed Landoulsi, Young Jun An, Sun-Shin Cha, Gilbert Richarme
J Biol Chem. 2012 Feb 17; 287(8): 5861–5870. Published online 2011 Dec 7. doi: 10.1074/jbc.M111.299198
PMCID:
PMC3285355
AbstractArticlePDF–1.2M
4.
Structures of the ribosome in intermediate states of ratcheting
Wen Zhang, Jack Dunkle, Jamie H. D. Cate
Science. Author manuscript; available in PMC 2010 Aug 10.
Published in final edited form as: Science. 2009 Aug 21; 325(5943): 1014–1017. doi: 10.1126/science.1175275
PMCID:
PMC2919209
AbstractArticlePDF–2.2M
5.
Regulation of the protein-conducting channel by a bound ribosome
James Gumbart, Leonardo G. Trabuco, Eduard Schreiner, Elizabeth Villa, Klaus Schulten
Structure. Author manuscript; available in PMC 2010 Nov 11.
Published in final edited form as: Structure. 2009 Nov 11; 17(11): 1453–1464. doi: 10.1016/j.str.2009.09.010
PMCID:
PMC2778611
AbstractArticlePDF–3.1M
6.
Genetic Interaction Screens with Ordered Overexpression and Deletion Clone Sets Implicate the Escherichia coli GTPase YjeQ in Late Ribosome Biogenesis
Tracey L. Campbell, Eric D. Brown
J Bacteriol. 2008 Apr; 190(7): 2537–2545. Published online 2008 Jan 25. doi: 10.1128/JB.01744-07
PMCID:
PMC2293177
AbstractArticlePDF–236K
7.
Protein abundance profiling of the Escherichia coli cytosol
Yasushi Ishihama, Thorsten Schmidt, Juri Rappsilber, Matthias Mann, F Ulrich Hartl, Michael J Kerner, Dmitrij Frishman
BMC Genomics. 2008; 9: 102. Published online 2008 Feb 27. doi: 10.1186/1471-2164-9-102
PMCID:
PMC2292177
AbstractArticlePDF–1.0M
8.
Importance of the 5 S rRNA-binding Ribosomal Proteins for Cell Viability and Translation in Escherichia coli
Alexey P. Korepanov, George M. Gongadze, Maria B. Garber, Donald L. Court, Mikhail G. Bubunenko
J Mol Biol. Author manuscript; available in PMC 2007 Aug 6.
Published in final edited form as: J Mol Biol. 2007 Mar 2; 366(4): 1199–1208. Published online 2006 Dec 15. doi: 10.1016/j.jmb.2006.11.097
PMCID:
PMC1939977
AbstractArticlePDF–791K
9.
Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection
Tomoya Baba, Takeshi Ara, Miki Hasegawa, Yuki Takai, Yoshiko Okumura, Miki Baba, Kirill A Datsenko, Masaru Tomita, Barry L Wanner, Hirotada Mori
Mol Syst Biol. 2006; 2: 2006.0008. Published online 2006 Feb 21. doi: 10.1038/msb4100050
PMCID:
PMC1681482
AbstractArticlePDF–400K
10.
Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110
Koji Hayashi, Naoki Morooka, Yoshihiro Yamamoto, Katsutoshi Fujita, Katsumi Isono, Sunju Choi, Eiichi Ohtsubo, Tomoya Baba, Barry L Wanner, Hirotada Mori, Takashi Horiuchi
Mol Syst Biol. 2006; 2: 2006.0007. Published online 2006 Feb 21. doi: 10.1038/msb4100049
PMCID:
PMC1681481
AbstractArticlePDF–141K
11.
Escherichia coli K-12: a cooperatively developed annotation snapshot—2005
Monica Riley, Takashi Abe, Martha B. Arnaud, Mary K.B. Berlyn, Frederick R. Blattner, Roy R. Chaudhuri, Jeremy D. Glasner, Takashi Horiuchi, Ingrid M. Keseler, Takehide Kosuge, Hirotada Mori, Nicole T. Perna, Guy Plunkett, III, Kenneth E. Rudd, Margrethe H. Serres, Gavin H. Thomas, Nicholas R. Thomson, David Wishart, Barry L. Wanner
Nucleic Acids Res. 2006; 34(1): 1–9. Published online 2006 Jan 5. doi: 10.1093/nar/gkj405
PMCID:
PMC1325200
AbstractArticlePDF–204K
12.
Nuclease protection analysis of ribonucleoprotein complexes: use of the cytotoxic ribonuclease alpha-sarcin to determine the binding sites for Escherichia coli ribosomal proteins L5, L18, and L25 on 5S rRNA.
P W Huber, I G Wool
Proc Natl Acad Sci U S A. 1984 Jan; 81(2): 322–326. doi: 10.1073/pnas.81.2.322
PMCID:
PMC344668
SummaryPage BrowsePDF–1.4M
13.
Translational regulation by ribosomal protein S8 in Escherichia coli: structural homology between rRNA binding site and feedback target on mRNA.
P O Olins, M Nomura
Nucleic Acids Res. 1981 Apr 10; 9(7): 1757–1764. doi: 10.1093/nar/9.7.1757
PMCID:
PMC326795
SummaryPage BrowsePDF–806K
14.
The spc ribosomal protein operon of Escherichia coli: sequence and cotranscription of the ribosomal protein genes and a protein export gene.
D P Cerretti, D Dean, G R Davis, D M Bedwell, M Nomura
Nucleic Acids Res. 1983 May 11; 11(9): 2599–2616. doi: 10.1093/nar/11.9.2599
Correction in:
Nucleic Acids Res. 1983 Sep 10; 11(17): 6156.
PMCID:
PMC325911
SummaryPage BrowsePDF–1.4M
15.
The ribosomal neighbourhood of the central fold of tRNA: cross-links from position 47 of tRNA located at the A, P or E site.
M Osswald, T Döring, R Brimacombe
Nucleic Acids Res. 1995 Nov 25; 23(22): 4635–4641. doi: 10.1093/nar/23.22.4635
PMCID:
PMC307437
SummaryPage BrowsePDF–1.6M

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