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Select item 32058581.

Cross-linking Measurements of In Vivo Protein Complex Topologies

Chunxiang Zheng, Li Yang, Michael R. Hoopmann, Jimmy K. Eng, Xiaoting Tang, Chad R. Weisbrod, James E. Bruce

Mol Cell Proteomics. 2011 Oct; 10(10): M110.006841. Published online 2011 Jun 22. doi: 10.1074/mcp.M110.006841

PMCID:: PMC3205858

Abstract Article PDF–2.4M

Select item 31230822.

Functional and Metabolic Effects of Adaptive Glycerol Kinase (GLPK) Mutants in Escherichia coli

M. Kenyon Applebee, Andrew R. Joyce, Tom M. Conrad, Donald W. Pettigrew, Bernhard Ø. Palsson

J Biol Chem. 2011 Jul 1; 286(26): 23150–23159. Published online 2011 May 6. doi: 10.1074/jbc.M110.195305

PMCID:: PMC3123082

Abstract Article PDF–574K

Select item 27899693.

Oligomeric interactions provide alternatives to direct steric modes of control of sugar kinase/actin/hsp70 superfamily functions by heterotropic allosteric effectors: Inhibition of E. coli glycerol kinase

Donald W. Pettigrew

Arch Biochem Biophys. Author manuscript; available in PMC 2010 Dec 1.

Published in final edited form as: Arch Biochem Biophys. 2009 Dec; 492(1-2): 29–39. Published online 2009 Oct 9. doi: 10.1016/j.abb.2009.10.001

PMCID:: PMC2789969

Abstract Article PDF–2.5M

Select item 26608504.

Amino acid substitutions in the sugar kinase/hsp70/actin superfamily conserved ATPase core of E. coli glycerol kinase modulate allosteric ligand affinity but do not alter allosteric coupling

Donald W. Pettigrew

Arch Biochem Biophys. Author manuscript; available in PMC 2010 Jan 15.

Published in final edited form as: Arch Biochem Biophys. 2009 Jan 15; 481(2): 151–156. Published online 2008 Nov 27. doi: 10.1016/j.abb.2008.11.020

PMCID:: PMC2660850

Abstract Article PDF–1.2M

Select item 22921775.

Protein abundance profiling of the Escherichia coli cytosol

Yasushi Ishihama, Thorsten Schmidt, Juri Rappsilber, Matthias Mann, F Ulrich Hartl, Michael J Kerner, Dmitrij Frishman

BMC Genomics. 2008; 9: 102. Published online 2008 Feb 27. doi: 10.1186/1471-2164-9-102

PMCID:: PMC2292177

Abstract Article PDF–1.0M

Select item 16982096.

Experimental and Computational Assessment of Conditionally Essential Genes in Escherichia coli

Andrew R. Joyce, Jennifer L. Reed, Aprilfawn White, Robert Edwards, Andrei Osterman, Tomoya Baba, Hirotada Mori, Scott A. Lesely, Bernhard Ø. Palsson, Sanjay Agarwalla

J Bacteriol. 2006 Dec; 188(23): 8259–8271. Published online 2006 Sep 29. doi: 10.1128/JB.00740-06

PMCID:: PMC1698209

Abstract Article PDF–779K

Select item 16814817.

Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110

Koji Hayashi, Naoki Morooka, Yoshihiro Yamamoto, Katsutoshi Fujita, Katsumi Isono, Sunju Choi, Eiichi Ohtsubo, Tomoya Baba, Barry L Wanner, Hirotada Mori, Takashi Horiuchi

Mol Syst Biol. 2006; 2: 2006.0007. Published online 2006 Feb 21. doi: 10.1038/msb4100049

PMCID:: PMC1681481

Abstract Article PDF–141K

Select item 13252008.

Escherichia coli K-12: a cooperatively developed annotation snapshot—2005

Monica Riley, Takashi Abe, Martha B. Arnaud, Mary K.B. Berlyn, Frederick R. Blattner, Roy R. Chaudhuri, Jeremy D. Glasner, Takashi Horiuchi, Ingrid M. Keseler, Takehide Kosuge, Hirotada Mori, Nicole T. Perna, Guy Plunkett, III, Kenneth E. Rudd, Margrethe H. Serres, Gavin H. Thomas, Nicholas R. Thomson, David Wishart, Barry L. Wanner

Nucleic Acids Res. 2006; 34(1): 1–9. Published online 2006 Jan 5. doi: 10.1093/nar/gkj405

PMCID:: PMC1325200

Abstract Article PDF–204K

Select item 13030639.

Mechanisms of Selectivity in Channels and Enzymes Studied with Interactive Molecular Dynamics

Paul Grayson, Emad Tajkhorshid, Klaus Schulten

Biophys J. 2003 Jul; 85(1): 36–48. doi: 10.1016/S0006-3495(03)74452-X

PMCID:: PMC1303063

Abstract Article PDF–1.5M

Select item 127432010.

Polyamine stress at high pH in Escherichia coli K-12

Elizabeth Yohannes, Amy E Thurber, Jessica C Wilks, Daniel P Tate, Joan L Slonczewski

BMC Microbiol. 2005; 5: 59. Published online 2005 Oct 13. doi: 10.1186/1471-2180-5-59

PMCID:: PMC1274320

Abstract Article PDF–843K

Select item 53467411.

High-throughput mutation detection underlying adaptive evolution of Escherichia coli-K12

Christiane Honisch, Anu Raghunathan, Charles R. Cantor, Bernhard Ø. Palsson, Dirk van den Boom

Genome Res. 2004 Dec; 14(12): 2495–2502. doi: 10.1101/gr.2977704

PMCID:: PMC534674

Abstract Article PDF–427K

Select item 52694012.

Mutational analysis of the Escherichia coli glpFK region with Tn5 mutagenesis and the polymerase chain reaction.

J R Lupski, Y H Zhang, M Rieger, M Minter, B Hsu, B G Ooi, T Koeuth, E R McCabe

J Bacteriol. 1990 Oct; 172(10): 6129–6134. doi: 10.1128/jb.172.10.6129-6134.1990

PMCID:: PMC526940

Summary Page Browse PDF–1.4M

Select item 40993513.

Carbon nutrition of Escherichia coli in the mouse intestine

Dong-Eun Chang, Darren J. Smalley, Don L. Tucker, Mary P. Leatham, Wendy E. Norris, Sarah J. Stevenson, April B. Anderson, Joe E. Grissom, David C. Laux, Paul S. Cohen, Tyrrell Conway

Proc Natl Acad Sci U S A. 2004 May 11; 101(19): 7427–7432. Published online 2004 May 3. doi: 10.1073/pnas.0307888101