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Items: 15

Select item 41238551.

The binary protein-protein interaction landscape of Escherichia coli

Seesandra V. Rajagopala, Patricia Sikorski, Ashwani Kumar, Roberto Mosca, James Vlasblom, Roland Arnold, Jonathan Franca-Koh, Suman B. Pakala, Sadhna Phanse, Arnaud Ceol, Roman Häuser, Gabriella Siszler, Stefan Wuchty, Andrew Emili, Mohan Babu, Patrick Aloy, Rembert Pieper, Peter Uetz

Nat Biotechnol. Author manuscript; available in PMC 2014 Sep 1.

Published in final edited form as: Nat Biotechnol. 2014 Mar; 32(3): 285–290. Published online 2014 Feb 23. doi: 10.1038/nbt.2831

PMCID:: PMC4123855

Abstract Article PDF–1.1M

Select item 16982092.

Experimental and Computational Assessment of Conditionally Essential Genes in Escherichia coli

Andrew R. Joyce, Jennifer L. Reed, Aprilfawn White, Robert Edwards, Andrei Osterman, Tomoya Baba, Hirotada Mori, Scott A. Lesely, Bernhard Ø. Palsson, Sanjay Agarwalla

J Bacteriol. 2006 Dec; 188(23): 8259–8271. Published online 2006 Sep 29. doi: 10.1128/JB.00740-06

PMCID:: PMC1698209

Abstract Article PDF–779K

Select item 16814813.

Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110

Koji Hayashi, Naoki Morooka, Yoshihiro Yamamoto, Katsutoshi Fujita, Katsumi Isono, Sunju Choi, Eiichi Ohtsubo, Tomoya Baba, Barry L Wanner, Hirotada Mori, Takashi Horiuchi

Mol Syst Biol. 2006; 2: 2006.0007. Published online 2006 Feb 21. doi: 10.1038/msb4100049

PMCID:: PMC1681481

Abstract Article PDF–141K

Select item 13252004.

Escherichia coli K-12: a cooperatively developed annotation snapshot—2005

Monica Riley, Takashi Abe, Martha B. Arnaud, Mary K.B. Berlyn, Frederick R. Blattner, Roy R. Chaudhuri, Jeremy D. Glasner, Takashi Horiuchi, Ingrid M. Keseler, Takehide Kosuge, Hirotada Mori, Nicole T. Perna, Guy Plunkett, III, Kenneth E. Rudd, Margrethe H. Serres, Gavin H. Thomas, Nicholas R. Thomson, David Wishart, Barry L. Wanner

Nucleic Acids Res. 2006; 34(1): 1–9. Published online 2006 Jan 5. doi: 10.1093/nar/gkj405

PMCID:: PMC1325200

Abstract Article PDF–204K

Select item 5529175.

Lessons from Escherichia coli genes similarly regulated in response to nitrogen and sulfur limitation

Prasad Gyaneshwar, Oleg Paliy, Jon McAuliffe, Adriane Jones, Michael I. Jordan, Sydney Kustu

Proc Natl Acad Sci U S A. 2005 Mar 1; 102(9): 3453–3458. Published online 2005 Feb 16. doi: 10.1073/pnas.0500141102

PMCID:: PMC552917

Abstract Article PDF–384K

Select item 2872786.

Methionine synthesis in Escherichia coli: effect of the MetR protein on metE and metH expression.

X Y Cai, M E Maxon, B Redfield, R Glass, N Brot, H Weissbach

Proc Natl Acad Sci U S A. 1989 Jun; 86(12): 4407–4411. doi: 10.1073/pnas.86.12.4407

PMCID:: PMC287278

Summary Page Browse PDF–1.1M

Select item 2864087.

Regulation of methionine synthesis in Escherichia coli: effect of the MetR protein on the expression of the metE and metR genes.

M E Maxon, B Redfield, X Y Cai, R Shoeman, K Fujita, W Fisher, G Stauffer, H Weissbach, N Brot

Proc Natl Acad Sci U S A. 1989 Jan; 86(1): 85–89. doi: 10.1073/pnas.86.1.85

PMCID:: PMC286408

Summary Page Browse PDF–1.2M

Select item 2119588.

A new methionine locus, metR, that encodes a trans-acting protein required for activation of metE and metH in Escherichia coli and Salmonella typhimurium.

M L Urbanowski, L T Stauffer, L S Plamann, G V Stauffer

J Bacteriol. 1987 Apr; 169(4): 1391–1397. doi: 10.1128/jb.169.4.1391-1397.1987

PMCID:: PMC211958

Summary Page Browse PDF–1.4M

Select item 2103039.

Regulation of the Escherichia coli glyA gene by the metR gene product and homocysteine.

M D Plamann, G V Stauffer

J Bacteriol. 1989 Sep; 171(9): 4958–4962. doi: 10.1128/jb.171.9.4958-4962.1989

PMCID:: PMC210303

Summary Page Browse PDF–859K

Select item 21004610.

Role of homocysteine in metR-mediated activation of the metE and metH genes in Salmonella typhimurium and Escherichia coli.

M L Urbanowski, G V Stauffer

J Bacteriol. 1989 Jun; 171(6): 3277–3281. doi: 10.1128/jb.171.6.3277-3281.1989

PMCID:: PMC210046

Summary Page Browse PDF–982K

Select item 20907911.

Escherichia coli metR mutants that produce a MetR activator protein with an altered homocysteine response.

K A Byerly, M L Urbanowski, G V Stauffer

J Bacteriol. 1990 Jun; 172(6): 2839–2843. doi: 10.1128/jb.172.6.2839-2843.1990

PMCID:: PMC209079

Summary Page Browse PDF–1.0M

Select item 18752812.

Factors Influencing the Identification of Transcription Factor Binding Sites by Cross-Species Comparison

Lee Ann McCue, William Thompson, C. Steven Carmack, Charles E. Lawrence

Genome Res. 2002 Oct; 12(10): 1523–1532. doi: 10.1101/gr.323602

PMCID:: PMC187528

Abstract Article PDF–192K

Select item 17714413.

Characterization of the MetR binding sites for the glyA gene of Escherichia coli.

E Lorenz, G V Stauffer

J Bacteriol. 1995 Jul; 177(14): 4113–4120. doi: 10.1128/jb.177.14.4113-4120.1995

PMCID:: PMC177144

Summary PDF–828K

Select item 11099914.

Role of the RNA Polymerase α Subunits in MetR-Dependent Activation of metE and metH: Important Residues in the C-Terminal Domain and Orientation Requirements within RNA Polymerase

Paula S. Fritsch, Mark L. Urbanowski, George V. Stauffer

J Bacteriol. 2000 Oct; 182(19): 5539–5550. doi: 10.1128/jb.182.19.5539-5550.2000

PMCID:: PMC110999

Abstract Article PDF–1.2M

Select item 5468615.

Structure-function studies on Escherichia coli MetR protein, a putative prokaryotic leucine zipper protein.

M E Maxon, J Wigboldus, N Brot, H Weissbach

Proc Natl Acad Sci U S A. 1990 Sep; 87(18): 7076–7079. doi: 10.1073/pnas.87.18.7076

PMCID:: PMC54686

Summary Page Browse PDF–918K

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