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Select item 82957191.

Computational analysis of the binding mode of 8-oxo-guanine to formamidopyrimidine-DNA glycosylase

Kun Song, Viktor Hornak, Carlos de los Santos, Arthur P. Grollman, Carlos Simmerling

Biochemistry. Author manuscript; available in PMC 2021 Jul 22.

Published in final edited form as: Biochemistry. 2006 Sep 12; 45(36): 10886–10894. doi: 10.1021/bi060380m

PMCID:: PMC8295719

Abstract Article PDF–752K

Select item 68373492.

The role of Fpg protein in UVC-induced DNA lesions

A C T Silva-Júnior, L M B O Asad, I Felzenszwalb, N R Asad

Redox Rep. 2012; 17(3): 95–100. Published online 2013 Jul 19. doi: 10.1179/1351000212Y.0000000006

PMCID:: PMC6837349

Abstract Article PDF–241K

Select item 48147143.

Molecular simulations reveal a common binding mode for glycosylase binding of oxidatively damaged DNA lesions

Kun Song, Catherine Kelso, Carlos de los Santos, Arthur P. Grollman, Carlos Simmerling

J Am Chem Soc. Author manuscript; available in PMC 2016 Mar 31.

Published in final edited form as: J Am Chem Soc. 2007 Nov 28; 129(47): 14536–14537. Published online 2007 Nov 8. doi: 10.1021/ja075128w

PMCID:: PMC4814714

Abstract Article PDF–247K

Select item 41238554.

The binary protein-protein interaction landscape of Escherichia coli

Seesandra V. Rajagopala, Patricia Sikorski, Ashwani Kumar, Roberto Mosca, James Vlasblom, Roland Arnold, Jonathan Franca-Koh, Suman B. Pakala, Sadhna Phanse, Arnaud Ceol, Roman Häuser, Gabriella Siszler, Stefan Wuchty, Andrew Emili, Mohan Babu, Patrick Aloy, Rembert Pieper, Peter Uetz

Nat Biotechnol. Author manuscript; available in PMC 2014 Sep 1.

Published in final edited form as: Nat Biotechnol. 2014 Mar; 32(3): 285–290. Published online 2014 Feb 23. doi: 10.1038/nbt.2831

PMCID:: PMC4123855

Abstract Article PDF–1.1M

Select item 39092885.

Accelerated Repair and Reduced Mutagenicity of DNA Damage Induced by Cigarette Smoke in Human Bronchial Cells Transfected with E.coli Formamidopyrimidine DNA Glycosylase

Mara Foresta, Alberto Izzotti, Sebastiano La Maestra, Rosanna Micale, Alessandro Poggi, Donatella Vecchio, Guido Frosina

PLoS One. 2014; 9(1): e87984. Published online 2014 Jan 31. doi: 10.1371/journal.pone.0087984

PMCID:: PMC3909288

Abstract Article PDF–3.1M

Select item 36172406.

Structural and Biochemical Analysis of DNA Helix Invasion by the Bacterial 8-Oxoguanine DNA Glycosylase MutM

Rou-Jia Sung, Michael Zhang, Yan Qi, Gregory L. Verdine

J Biol Chem. 2013 Apr 5; 288(14): 10012–10023. Published online 2013 Feb 12. doi: 10.1074/jbc.M112.415612

PMCID:: PMC3617240

Abstract Article PDF–3.2M

Select item 33657427.

Sequence-dependent Structural Variation in DNA Undergoing Intrahelical Inspection by the DNA glycosylase MutM

Rou-Jia Sung, Michael Zhang, Yan Qi, Gregory L. Verdine

J Biol Chem. 2012 May 25; 287(22): 18044–18054. Published online 2012 Mar 30. doi: 10.1074/jbc.M111.313635

PMCID:: PMC3365742

Abstract Article PDF–2.7M

Select item 31811738.

Modulation of the Turnover of Formamidopyrimidine DNA Glycosylase (Fpg)

Michael Harbut, Michael Meador, M.L. Dodson, R. Stephen Lloyd

Biochemistry. Author manuscript; available in PMC 2011 Sep 27.

Published in final edited form as: Biochemistry. 2006 Jun 13; 45(23): 7341–7346. doi: 10.1021/bi052383p

PMCID:: PMC3181173

Abstract Article PDF–769K

Select item 31565909.

Escherichia Coli Fpg Glycosylase is Nonrendundant and Required for the Rapid Global Repair of Oxidized Purine and Pyrimidine Damage In Vivo

Brandy J. Schalow, Charmain T Courcelle, Justin Courcelle

J Mol Biol. Author manuscript; available in PMC 2012 Jul 8.

Published in final edited form as: J Mol Biol. 2011 Jul 8; 410(2): 183–193. Published online 2011 May 13. doi: 10.1016/j.jmb.2011.05.004

PMCID:: PMC3156590

Abstract Article PDF–874K

Select item 275260010.

Finding needles in DNA stacks

Cynthia J. Burrows, Aaron M. Fleming

Proc Natl Acad Sci U S A. 2009 Sep 22; 106(38): 16010–16011. Published online 2009 Sep 15. doi: 10.1073/pnas.0909136106

PMCID:: PMC2752600

Article PDF–453K

Select item 274123411.

Redox signaling between DNA repair proteins for efficient lesion detection

Amie K. Boal, Joseph C. Genereux, Pamela A. Sontz, Jeffrey A. Gralnick, Dianne K. Newman, Jacqueline K. Barton

Proc Natl Acad Sci U S A. 2009 Sep 8; 106(36): 15237–15242. Published online 2009 Aug 31. doi: 10.1073/pnas.0908059106

PMCID:: PMC2741234

Abstract Article PDF–1.0M

Select item 244288912.

Unusual Structural Features of Hydantoin Lesions Translate into Efficient Recognition by Escherichia coli Fpg

Nirmala Krishnamurthy, James G. Muller, Cynthia J. Burrows, Sheila S. David

Biochemistry. Author manuscript; available in PMC 2008 Aug 21.

Published in final edited form as: Biochemistry. 2007 Aug 21; 46(33): 9355–9365. Published online 2007 Jul 27. doi: 10.1021/bi602459v

PMCID:: PMC2442889

Abstract Article PDF–965K

Select item 225865713.

Role of Accessory DNA Polymerases in DNA Replication in Escherichia coli: Analysis of the dnaX36 Mutator Mutant

Damian Gawel, Phuong T. Pham, Iwona J. Fijalkowska, Piotr Jonczyk, Roel M. Schaaper

J Bacteriol. 2008 Mar; 190(5): 1730–1742. Published online 2007 Dec 21. doi: 10.1128/JB.01463-07

PMCID:: PMC2258657

Abstract Article PDF–578K

Select item 222423414.

A continuous hyperchromicity assay to characterize the kinetics and thermodynamics of DNA lesion recognition and base excision

Conceição A. S. A. Minetti, David P. Remeta, Kenneth J. Breslauer

Proc Natl Acad Sci U S A. 2008 Jan 8; 105(1): 70–75. Published online 2008 Jan 2. doi: 10.1073/pnas.0710363105

PMCID:: PMC2224234

Abstract Article PDF–444K

Select item 204520415.

The mutT Defect Does Not Elevate Chromosomal Fragmentation in Escherichia coli Because of the Surprisingly Low Levels of MutM/MutY-Recognized DNA Modifications

Ella Rotman, Andrei Kuzminov

J Bacteriol. 2007 Oct; 189(19): 6976–6988. Published online 2007 Jul 6. doi: 10.1128/JB.00776-07

PMCID:: PMC2045204

Abstract Article PDF–564K

Select item 168148116.

Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110

Koji Hayashi, Naoki Morooka, Yoshihiro Yamamoto, Katsutoshi Fujita, Katsumi Isono, Sunju Choi, Eiichi Ohtsubo, Tomoya Baba, Barry L Wanner, Hirotada Mori, Takashi Horiuchi

Mol Syst Biol. 2006; 2: 2006.0007. Published online 2006 Feb 21. doi: 10.1038/msb4100049

PMCID:: PMC1681481

Abstract Article PDF–141K

Select item 152207417.

Regulon and promoter analysis of the E. coli heat-shock factor, σ³², reveals a multifaceted cellular response to heat stress

Gen Nonaka, Matthew Blankschien, Christophe Herman, Carol A. Gross, Virgil A. Rhodius

Genes Dev. 2006 Jul 1; 20(13): 1776–1789. doi: 10.1101/gad.1428206

PMCID:: PMC1522074

Abstract Article PDF–548K

Select item 132520018.

Escherichia coli K-12: a cooperatively developed annotation snapshot—2005

Monica Riley, Takashi Abe, Martha B. Arnaud, Mary K.B. Berlyn, Frederick R. Blattner, Roy R. Chaudhuri, Jeremy D. Glasner, Takashi Horiuchi, Ingrid M. Keseler, Takehide Kosuge, Hirotada Mori, Nicole T. Perna, Guy Plunkett, III, Kenneth E. Rudd, Margrethe H. Serres, Gavin H. Thomas, Nicholas R. Thomson, David Wishart, Barry L. Wanner

Nucleic Acids Res. 2006; 34(1): 1–9. Published online 2006 Jan 5. doi: 10.1093/nar/gkj405