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Select item 98268451.

Characterization of the Escherichia coli XPD/Rad3 iron-sulfur helicase YoaA in complex with the DNA polymerase III clamp loader subunit chi (χ)

Savannah J. Weeks-Pollenz, Yasmin Ali, Leslie A. Morris, Vincent A. Sutera, Elizabeth E. Dudenhausen, Margaret Hibnick, Susan T. Lovett, Linda B. Bloom

J Biol Chem. 2023 Jan; 299(1): 102786. Published online 2022 Dec 9. doi: 10.1016/j.jbc.2022.102786

PMCID:: PMC9826845

Abstract Article PDF–3.1M

Select item 83784792.

Genetic Analysis of DinG Family Helicase YoaA and Its Interaction with Replication Clamp Loader Protein HolC in Escherichia coli

Vincent A. Sutera, Thalia H. Sass, Scott E. Leonard, Lingling Wu, David J. Glass, Gabriela G. Giordano, Yonatan Zur, Susan T. Lovett

J Bacteriol. 2021 Sep; 203(18): e00228-21. Prepublished online 2021 Jun 28. Published online 2021 Aug 20. doi: 10.1128/JB.00228-21

PMCID:: PMC8378479

Abstract Article PDF–2.1M

Select item 80922173.

The Role of Replication Clamp-Loader Protein HolC of Escherichia coli in Overcoming Replication/Transcription Conflicts

Deani L. Cooper, Taku Harada, Samia Tamazi, Alexander E. Ferrazzoli, Susan T. Lovett

mBio. 2021 Mar-Apr; 12(2): e00184-21. Published online 2021 Mar 9. doi: 10.1128/mBio.00184-21

PMCID:: PMC8092217

Abstract Article PDF–2.2M

Select item 71033054.

The intracellular sites of early replication and budding of SARS-coronavirus

Silke Stertz, Mike Reichelt, Martin Spiegel, Thomas Kuri, Luis Martínez-Sobrido, Adolfo García-Sastre, Friedemann Weber, Georg Kochs

Virology. 2007 May 10; 361(2): 304–315. Published online 2007 Jan 8. doi: 10.1016/j.virol.2006.11.027

PMCID:: PMC7103305

Abstract Article PDF–2.6M

Select item 48698655.

A Single Subunit Directs the Assembly of the Escherichia coli DNA Sliding Clamp Loader

Ah Young Park, Slobodan Jergic, Argyris Politis, Brandon T. Ruotolo, Daniel Hirshberg, Linda L. Jessop, Jennifer L. Beck, Daniel Barsky, Mike O’Donnell, Nicholas E. Dixon, Carol V. Robinson

Structure. Author manuscript; available in PMC 2016 May 17.

Published in final edited form as: Structure. 2010 Mar 10; 18(3): 285–292. doi: 10.1016/j.str.2010.01.009

PMCID:: PMC4869865

Abstract Article PDF–782K

Select item 47116476.

Solution study of the Escherichia coli DNA polymerase III clamp loader reveals the location of the dynamic ψχ heterodimer

Farzaneh Tondnevis, Richard E. Gillilan, Linda B. Bloom, Robert McKenna

Struct Dyn. 2015 Sep; 2(5): 054701. Published online 2015 Aug 18. doi: 10.1063/1.4927407

PMCID:: PMC4711647

Abstract Article PDF–981K

Select item 41995117.

ssb Gene Duplication Restores the Viability of ΔholC and ΔholD Escherichia coli Mutants

Stéphane Duigou, Maud Silvain, Enrique Viguera, Bénédicte Michel

PLoS Genet. 2014 Oct; 10(10): e1004719. Published online 2014 Oct 16. doi: 10.1371/journal.pgen.1004719

PMCID:: PMC4199511

Abstract Article PDF–1.9M

Select item 41238558.

The binary protein-protein interaction landscape of Escherichia coli

Seesandra V. Rajagopala, Patricia Sikorski, Ashwani Kumar, Roberto Mosca, James Vlasblom, Roland Arnold, Jonathan Franca-Koh, Suman B. Pakala, Sadhna Phanse, Arnaud Ceol, Roman Häuser, Gabriella Siszler, Stefan Wuchty, Andrew Emili, Mohan Babu, Patrick Aloy, Rembert Pieper, Peter Uetz

Nat Biotechnol. Author manuscript; available in PMC 2014 Sep 1.

Published in final edited form as: Nat Biotechnol. 2014 Mar; 32(3): 285–290. Published online 2014 Feb 23. doi: 10.1038/nbt.2831

PMCID:: PMC4123855

Abstract Article PDF–1.1M

Select item 35179329.

Studying protein complexes by the yeast two-hybrid system

Seesandra V. Rajagopala, Patricia Sikorski, J. Harry Caufield, Andrey Tovchigrechko, Peter Uetz

Methods. Author manuscript; available in PMC 2013 Dec 1.

Published in final edited form as: Methods. 2012 Dec; 58(4): 392–399. Published online 2012 Jul 24. doi: 10.1016/j.ymeth.2012.07.015

PMCID:: PMC3517932

Abstract Article PDF–2.4M

Select item 319939310.

Structure of the SSB–DNA polymerase III interface and its role in DNA replication

Aimee H Marceau, Soon Bahng, Shawn C Massoni, Nicholas P George, Steven J Sandler, Kenneth J Marians, James L Keck

EMBO J. 2011 Oct 19; 30(20): 4236–4247. Published online 2011 Aug 19. doi: 10.1038/emboj.2011.305

PMCID:: PMC3199393

Abstract Article PDF–1.4M

Select item 304561911.

Site-directed mutagenesis of the χ subunit of DNA polymerase III and single-stranded DNA-binding protein of E. coli reveals key residues for their interaction

Natalie Naue, Roman Fedorov, Andreas Pich, Dietmar J. Manstein, Ute Curth

Nucleic Acids Res. 2011 Mar; 39(4): 1398–1407. Published online 2010 Oct 22. doi: 10.1093/nar/gkq988

PMCID:: PMC3045619

Abstract Article PDF–4.3M

Select item 286136612.

Binding Specificity of E. coli SSB protein for the χ subunit of DNA pol III Holoenzyme and PriA helicase.

Alexander G. Kozlov, Maria J. Jezewska, Wlodzimierz Bujalowski, Timothy M. Lohman

Biochemistry. Author manuscript; available in PMC 2011 May 4.

Published in final edited form as: Biochemistry. 2010 May 4; 49(17): 3555–3566. doi: 10.1021/bi100069s

PMCID:: PMC2861366

Abstract Article PDF–3.3M

Select item 284928113.

Dual Functions, Clamp Opening and Primer-Template Recognition, Define a Key Clamp Loader Subunit

Maria Magdalena Coman, Mi Jin, Razvan Ceapa, Jeff Finkelstein, Michael O'Donnell, Brian T. Chait, Manju M. Hingorani

J Mol Biol. Author manuscript; available in PMC 2010 Apr 5.

Published in final edited form as: J Mol Biol. 2004 Oct 1; 342(5): 1457–1469. doi: 10.1016/j.jmb.2004.07.097

PMCID:: PMC2849281

Abstract Article PDF–935K

Select item 278154314.

The Clamp Loader Assembles the β Clamp onto Either a 3′ or 5′ Primer Terminus: THE UNDERLYING BASIS FAVORING 3′ LOADING

Mee Sook Park, Mike O'Donnell

J Biol Chem. 2009 Nov 6; 284(45): 31473–31483. Published online 2009 Sep 15. doi: 10.1074/jbc.M109.050310

PMCID:: PMC2781543

Abstract Article PDF–2.7M

Select item 268498815.

The mechanism of ATP-dependent primer-template recognition by a clamp loader complex

Kyle R. Simonetta, Steven L. Kazmirski, Eric R. Goedken, Aaron J. Cantor, Brian A. Kelch, Randall McNally, Steven N. Seyedin, Debora L. Makino, Mike O’Donnell, John Kuriyan

Cell. Author manuscript; available in PMC 2009 Nov 15.

Published in final edited form as: Cell. 2009 May 15; 137(4): 659–671. doi: 10.1016/j.cell.2009.03.044

PMCID:: PMC2684988

Abstract Article PDF–6.8M

Select item 263387016.

Systems based mapping demonstrates that recovery from alkylation damage requires DNA repair, RNA processing, and translation associated networks

John P. Rooney, Ajish D. George, Ashish Patil, Ulrike Begley, Erin Bessette, Maria R. Zappala, Xin Huang, Douglas A. Conklin, Richard P. Cunningham, Thomas J. Begley

Genomics. Author manuscript; available in PMC 2010 Jan 1.

Published in final edited form as: Genomics. 2009 Jan; 93(1): 42–51. Published online 2008 Oct 16. doi: 10.1016/j.ygeno.2008.09.001

PMCID:: PMC2633870

Abstract Article PDF–1.9M

Select item 168148117.

Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110

Koji Hayashi, Naoki Morooka, Yoshihiro Yamamoto, Katsutoshi Fujita, Katsumi Isono, Sunju Choi, Eiichi Ohtsubo, Tomoya Baba, Barry L Wanner, Hirotada Mori, Takashi Horiuchi

Mol Syst Biol. 2006; 2: 2006.0007. Published online 2006 Feb 21. doi: 10.1038/msb4100049

PMCID:: PMC1681481

Abstract Article PDF–141K

Select item 152207418.

Regulon and promoter analysis of the E. coli heat-shock factor, σ³², reveals a multifaceted cellular response to heat stress

Gen Nonaka, Matthew Blankschien, Christophe Herman, Carol A. Gross, Virgil A. Rhodius

Genes Dev. 2006 Jul 1; 20(13): 1776–1789. doi: 10.1101/gad.1428206

PMCID:: PMC1522074

Abstract Article PDF–548K

Select item 144809919.

Stress and Survival of Aging Escherichia coli rpoS Colonies

Claude Saint-Ruf, François Taddei, Ivan Matic

Genetics. 2004 Sep; 168(1): 541–546. doi: 10.1534/genetics.104.028704

PMCID:: PMC1448099

Abstract Article PDF–137K

Select item 132520020.

Escherichia coli K-12: a cooperatively developed annotation snapshot—2005

Monica Riley, Takashi Abe, Martha B. Arnaud, Mary K.B. Berlyn, Frederick R. Blattner, Roy R. Chaudhuri, Jeremy D. Glasner, Takashi Horiuchi, Ingrid M. Keseler, Takehide Kosuge, Hirotada Mori, Nicole T. Perna, Guy Plunkett, III, Kenneth E. Rudd, Margrethe H. Serres, Gavin H. Thomas, Nicholas R. Thomson, David Wishart, Barry L. Wanner

Nucleic Acids Res. 2006; 34(1): 1–9. Published online 2006 Jan 5. doi: 10.1093/nar/gkj405