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Items: 19

1.
Decoding genome-wide GadEWX-transcriptional regulatory networks reveals multifaceted cellular responses to acid stress in Escherichia coli
Sang Woo Seo, Donghyuk Kim, Edward J. O'Brien, Richard Szubin, Bernhard O. Palsson
Nat Commun. 2015; 6: 7970. Published online 2015 Aug 10. doi: 10.1038/ncomms8970
PMCID:
PMC4918353
AbstractArticlePDF–653K
2.
RcsB Is Required for Inducible Acid Resistance in Escherichia coli and Acts at gadE-Dependent and -Independent Promoters
Matthew D. Johnson, Neil A. Burton, Bernardo Gutiérrez, Kimberley Painter, Peter A. Lund
J Bacteriol. 2011 Jul; 193(14): 3653–3656. doi: 10.1128/JB.05040-11
PMCID:
PMC3133336
AbstractArticlePDF–524K
3.
Acid stress response in Escherichia coli: mechanism of regulation of gadA transcription by RcsB and GadE
Marie-Pierre Castanié-Cornet, Kaymeuang Cam, Bénédicte Bastiat, Adeline Cros, Patricia Bordes, Claude Gutierrez
Nucleic Acids Res. 2010 Jun; 38(11): 3546–3554. Published online 2010 Feb 26. doi: 10.1093/nar/gkq097
PMCID:
PMC2887963
AbstractArticlePDF–3.4M
4.
Indole is an inter-species biofilm signal mediated by SdiA
Jintae Lee, Arul Jayaraman, Thomas K Wood
BMC Microbiol. 2007; 7: 42. Published online 2007 May 18. doi: 10.1186/1471-2180-7-42
PMCID:
PMC1899176
AbstractArticlePDF–593K
5.
Mechanisms of Transcription Activation Exerted by GadX and GadW at the gadA and gadBC Gene Promoters of the Glutamate-Based Acid Resistance System in Escherichia coli
Angela Tramonti, Michele De Canio, Isabel Delany, Vincenzo Scarlato, Daniela De Biase
J Bacteriol. 2006 Dec; 188(23): 8118–8127. Published online 2006 Sep 15. doi: 10.1128/JB.01044-06
PMCID:
PMC1698215
AbstractArticlePDF–564K
6.
Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110
Koji Hayashi, Naoki Morooka, Yoshihiro Yamamoto, Katsutoshi Fujita, Katsumi Isono, Sunju Choi, Eiichi Ohtsubo, Tomoya Baba, Barry L Wanner, Hirotada Mori, Takashi Horiuchi
Mol Syst Biol. 2006; 2: 2006.0007. Published online 2006 Feb 21. doi: 10.1038/msb4100049
PMCID:
PMC1681481
AbstractArticlePDF–141K
7.
N-Acetyl-d-Glucosamine Induces the Expression of Multidrug Exporter Genes, mdtEF, via Catabolite Activation in Escherichia coli
Hidetada Hirakawa, Yoshihiko Inazumi, Yasuko Senda, Asuka Kobayashi, Takahiro Hirata, Kunihiko Nishino, Akihito Yamaguchi
J Bacteriol. 2006 Aug; 188(16): 5851–5858. doi: 10.1128/JB.00301-06
PMCID:
PMC1540094
AbstractArticlePDF–467K
8.
Large-scale identification of protein–protein interaction of Escherichia coli K-12
Mohammad Arifuzzaman, Maki Maeda, Aya Itoh, Kensaku Nishikata, Chiharu Takita, Rintaro Saito, Takeshi Ara, Kenji Nakahigashi, Hsuan-Cheng Huang, Aki Hirai, Kohei Tsuzuki, Seira Nakamura, Mohammad Altaf-Ul-Amin, Taku Oshima, Tomoya Baba, Natsuko Yamamoto, Tomoyo Kawamura, Tomoko Ioka-Nakamichi, Masanari Kitagawa, Masaru Tomita, Shigehiko Kanaya, Chieko Wada, Hirotada Mori
Genome Res. 2006 May; 16(5): 686–691. doi: 10.1101/gr.4527806
PMCID:
PMC1457052
AbstractArticlePDF–536K
9.
Escherichia coli K-12: a cooperatively developed annotation snapshot—2005
Monica Riley, Takashi Abe, Martha B. Arnaud, Mary K.B. Berlyn, Frederick R. Blattner, Roy R. Chaudhuri, Jeremy D. Glasner, Takashi Horiuchi, Ingrid M. Keseler, Takehide Kosuge, Hirotada Mori, Nicole T. Perna, Guy Plunkett, III, Kenneth E. Rudd, Margrethe H. Serres, Gavin H. Thomas, Nicholas R. Thomson, David Wishart, Barry L. Wanner
Nucleic Acids Res. 2006; 34(1): 1–9. Published online 2006 Jan 5. doi: 10.1093/nar/gkj405
PMCID:
PMC1325200
AbstractArticlePDF–204K
10.
Characterization of EvgAS-YdeO-GadE Branched Regulatory Circuit Governing Glutamate-Dependent Acid Resistance in Escherichia coli
Zhuo Ma, Nobuhisa Masuda, John W. Foster
J Bacteriol. 2004 Nov; 186(21): 7378–7389. doi: 10.1128/JB.186.21.7378-7389.2004
PMCID:
PMC523220
AbstractArticlePDF–438K
11.
Analysis of the Escherichia coli genome. V. DNA sequence of the region from 76.0 to 81.5 minutes.
H J Sofia, V Burland, D L Daniels, G Plunkett, 3rd, F R Blattner
Nucleic Acids Res. 1994 Jul 11; 22(13): 2576–2586. doi: 10.1093/nar/22.13.2576
PMCID:
PMC308212
SummaryPage BrowsePDF–2.3M
12.
pH-Dependent Modulation of Cyclic AMP Levels and GadW-Dependent Repression of RpoS Affect Synthesis of the GadX Regulator and Escherichia coli Acid Resistance
Zhuo Ma, Hope Richard, John W. Foster
J Bacteriol. 2003 Dec; 185(23): 6852–6859. doi: 10.1128/JB.185.23.6852-6859.2003
PMCID:
PMC262709
AbstractArticlePDF–728K
13.
Physical map location of a set of Escherichia coli genes (hde) whose expression is affected by the nucleoid protein H-NS.
T Yoshida, C Ueguchi, T Mizuno
J Bacteriol. 1993 Dec; 175(23): 7747–7748. doi: 10.1128/jb.175.23.7747-7748.1993
PMCID:
PMC206942
SummaryPage BrowsePDF–227K
14.
Genes of the GadX-GadW Regulon in Escherichia coli
Don L. Tucker, Nancy Tucker, Zhuo Ma, John W. Foster, Regina L. Miranda, Paul S. Cohen, Tyrrell Conway
J Bacteriol. 2003 May; 185(10): 3190–3201. doi: 10.1128/JB.185.10.3190-3201.2003
PMCID:
PMC154079
AbstractArticlePDF–2.7M
15.
Increased Adherence to Caco-2 Cells Caused by Disruption of the yhiE and yhiF Genes in Enterohemorrhagic Escherichia coli O157:H7
Ichiro Tatsuno, Keiji Nagano, Kazuki Taguchi, Li Rong, Hiroshi Mori, Chihiro Sasakawa
Infect Immun. 2003 May; 71(5): 2598–2606. doi: 10.1128/IAI.71.5.2598-2606.2003
PMCID:
PMC153261
AbstractArticlePDF–836K
16.
Escherichia coli Gene Expression Responsive to Levels of the Response Regulator EvgA
Nobuhisa Masuda, George M. Church
J Bacteriol. 2002 Nov; 184(22): 6225–6234. doi: 10.1128/JB.184.22.6225-6234.2002
PMCID:
PMC151933
AbstractArticlePDF–883K
17.
Collaborative Regulation of Escherichia coli Glutamate-Dependent Acid Resistance by Two AraC-Like Regulators, GadX and GadW (YhiW)
Zhuo Ma, Hope Richard, Don L. Tucker, Tyrrell Conway, John W. Foster
J Bacteriol. 2002 Dec; 184(24): 7001–7012. doi: 10.1128/JB.184.24.7001-7012.2002
PMCID:
PMC135476
AbstractArticlePDF–1.3M
18.
Gene Expression Profiling of the pH Response in Escherichia coli
Don L. Tucker, Nancy Tucker, Tyrrell Conway
J Bacteriol. 2002 Dec; 184(23): 6551–6558. doi: 10.1128/JB.184.23.6551-6558.2002
PMCID:
PMC135413
AbstractArticlePDF–447K
19.
Functional Characterization and Regulation of gadX, a Gene Encoding an AraC/XylS-Like Transcriptional Activator of the Escherichia coli Glutamic Acid Decarboxylase System
Angela Tramonti, Paolo Visca, Michele De Canio, Maurizio Falconi, Daniela De Biase
J Bacteriol. 2002 May; 184(10): 2603–2613. doi: 10.1128/JB.184.10.2603-2613.2002
PMCID:
PMC135039
AbstractArticlePDF–1.3M

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