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Items: 1 to 20 of 61

1.
Structural probing and mutagenic analysis of the stem-loop required for Escherichia coli dnaX ribosomal frameshifting: programmed efficiency of 50%
Bente Larsen, Raymond F Gesteland, John F Atkins
J Mol Biol. 1997 Aug 8; 271(1): 47–60. Published online 2002 May 25. doi: 10.1006/jmbi.1997.1162
PMCID:
PMC7126992
AbstractArticlePDF–836K
2.
The intracellular sites of early replication and budding of SARS-coronavirus
Silke Stertz, Mike Reichelt, Martin Spiegel, Thomas Kuri, Luis Martínez-Sobrido, Adolfo García-Sastre, Friedemann Weber, Georg Kochs
Virology. 2007 May 10; 361(2): 304–315. Published online 2007 Jan 8. doi: 10.1016/j.virol.2006.11.027
PMCID:
PMC7103305
AbstractArticlePDF–2.6M
3.
Phenotypes of dnaXE145A Mutant Cells Indicate that the Escherichia coli Clamp Loader Has a Role in the Restart of Stalled Replication Forks
Ingvild Flåtten, Emily Helgesen, Ida Benedikte Pedersen, Torsten Waldminghaus, Christiane Rothe, Riikka Taipale, Line Johnsen, Kirsten Skarstad
J Bacteriol. 2017 Dec 15; 199(24): e00412-17. Prepublished online 2017 Sep 25. Published online 2017 Nov 14. doi: 10.1128/JB.00412-17
PMCID:
PMC5686609
AbstractArticlePDF–2.1M
4.
A Single Subunit Directs the Assembly of the Escherichia coli DNA Sliding Clamp Loader
Ah Young Park, Slobodan Jergic, Argyris Politis, Brandon T. Ruotolo, Daniel Hirshberg, Linda L. Jessop, Jennifer L. Beck, Daniel Barsky, Mike O’Donnell, Nicholas E. Dixon, Carol V. Robinson
Structure. Author manuscript; available in PMC 2016 May 17.
Published in final edited form as: Structure. 2010 Mar 10; 18(3): 285–292. doi: 10.1016/j.str.2010.01.009
PMCID:
PMC4869865
AbstractArticlePDF–782K
5.
The DNA polymerase III holoenzyme contains γ and is not a trimeric polymerase
Paul R. Dohrmann, Raul Correa, Ryan L. Frisch, Susan M. Rosenberg, Charles S. McHenry
Nucleic Acids Res. 2016 Feb 18; 44(3): 1285–1297. Published online 2016 Jan 18. doi: 10.1093/nar/gkv1510
PMCID:
PMC4756838
AbstractArticlePDF–4.1M
6.
Solution study of the Escherichia coli DNA polymerase III clamp loader reveals the location of the dynamic ψχ heterodimer
Farzaneh Tondnevis, Richard E. Gillilan, Linda B. Bloom, Robert McKenna
Struct Dyn. 2015 Sep; 2(5): 054701. Published online 2015 Aug 18. doi: 10.1063/1.4927407
PMCID:
PMC4711647
AbstractArticlePDF–981K
7.
cryo-EM structures of the E. coli replicative DNA polymerase reveal its dynamic interactions with the DNA sliding clamp, exonuclease and τ
Rafael Fernandez-Leiro, Julian Conrad, Sjors HW Scheres, Meindert H Lamers
eLife. 2015; 4: e11134. Published online 2015 Oct 24. doi: 10.7554/eLife.11134
PMCID:
PMC4703070
AbstractArticlePDF–5.1M
8.
Kinetic analysis of PCNA clamp binding and release in the clamp loading reaction catalyzed by Saccharomyces cerevisiae replication factor C
Melissa R. Marzahn, Jaclyn N. Hayner, Jennifer A. Meyer, Linda B. Bloom
Biochim Biophys Acta. Author manuscript; available in PMC 2016 Jan 1.
Published in final edited form as: Biochim Biophys Acta. 2015 Jan; 1854(1): 31–38. Published online 2014 Oct 23. doi: 10.1016/j.bbapap.2014.09.019
PMCID:
PMC4262748
AbstractArticlePDF–988K
9.
The binary protein-protein interaction landscape of Escherichia coli
Seesandra V. Rajagopala, Patricia Sikorski, Ashwani Kumar, Roberto Mosca, James Vlasblom, Roland Arnold, Jonathan Franca-Koh, Suman B. Pakala, Sadhna Phanse, Arnaud Ceol, Roman Häuser, Gabriella Siszler, Stefan Wuchty, Andrew Emili, Mohan Babu, Patrick Aloy, Rembert Pieper, Peter Uetz
Nat Biotechnol. Author manuscript; available in PMC 2014 Sep 1.
Published in final edited form as: Nat Biotechnol. 2014 Mar; 32(3): 285–290. Published online 2014 Feb 23. doi: 10.1038/nbt.2831
PMCID:
PMC4123855
AbstractArticlePDF–1.1M
10.
Studying protein complexes by the yeast two-hybrid system
Seesandra V. Rajagopala, Patricia Sikorski, J. Harry Caufield, Andrey Tovchigrechko, Peter Uetz
Methods. Author manuscript; available in PMC 2013 Dec 1.
Published in final edited form as: Methods. 2012 Dec; 58(4): 392–399. Published online 2012 Jul 24. doi: 10.1016/j.ymeth.2012.07.015
PMCID:
PMC3517932
AbstractArticlePDF–2.4M
11.
Structure of the SSB–DNA polymerase III interface and its role in DNA replication
Aimee H Marceau, Soon Bahng, Shawn C Massoni, Nicholas P George, Steven J Sandler, Kenneth J Marians, James L Keck
EMBO J. 2011 Oct 19; 30(20): 4236–4247. Published online 2011 Aug 19. doi: 10.1038/emboj.2011.305
PMCID:
PMC3199393
AbstractArticlePDF–1.4M
12.
Polymerase Chaperoning and Multiple ATPase Sites Enable the E. coli DNA Polymerase III Holoenzyme to Rapidly Form Initiation Complexes
Christopher D. Downey, Elliott Crooke, Charles S. McHenry
J Mol Biol. Author manuscript; available in PMC 2012 Sep 23.
Published in final edited form as: J Mol Biol. 2011 Sep 23; 412(3): 340–353. Published online 2011 Jul 28. doi: 10.1016/j.jmb.2011.07.051
PMCID:
PMC3197712
AbstractArticlePDF–3.6M
13.
Selective inhibition of DNA replicase assembly by a non-natural nucleotide: Exploiting the structural diversity of ATP-binding sites
Kevin Eng, Sarah K Scouten-Ponticelli, Mark Sutton, Anthony Berdis
ACS Chem Biol. Author manuscript; available in PMC 2011 Sep 8.
Published in final edited form as: ACS Chem Biol. 2010 Feb 19; 5(2): 183–194. doi: 10.1021/cb900218c
PMCID:
PMC3169429
AbstractArticlePDF–4.0M
14.
Only One ATP-binding DnaX Subunit Is Required for Initiation Complex Formation by the Escherichia coli DNA Polymerase III Holoenzyme
Anna Wieczorek, Christopher D. Downey, H. Garry Dallmann, Charles S. McHenry
J Biol Chem. 2010 Sep 17; 285(38): 29049–29053. Published online 2010 Jul 30. doi: 10.1074/jbc.C110.165076
PMCID:
PMC2937935
AbstractArticlePDF–459K
15.
Dual Functions, Clamp Opening and Primer-Template Recognition, Define a Key Clamp Loader Subunit
Maria Magdalena Coman, Mi Jin, Razvan Ceapa, Jeff Finkelstein, Michael O'Donnell, Brian T. Chait, Manju M. Hingorani
J Mol Biol. Author manuscript; available in PMC 2010 Apr 5.
Published in final edited form as: J Mol Biol. 2004 Oct 1; 342(5): 1457–1469. doi: 10.1016/j.jmb.2004.07.097
PMCID:
PMC2849281
AbstractArticlePDF–935K
16.
A Slow ATP-induced Conformational Change Limits the Rate of DNA Binding but Not the Rate of β Clamp Binding by the Escherichia coli γ Complex Clamp Loader
Jennifer A. Thompson, Christopher O. Paschall, Mike O'Donnell, Linda B. Bloom
J Biol Chem. 2009 Nov 13; 284(46): 32147–32157. Published online 2009 Sep 15. doi: 10.1074/jbc.M109.045997
PMCID:
PMC2797285
AbstractArticlePDF–2.2M
17.
The Clamp Loader Assembles the β Clamp onto Either a 3′ or 5′ Primer Terminus: THE UNDERLYING BASIS FAVORING 3′ LOADING
Mee Sook Park, Mike O'Donnell
J Biol Chem. 2009 Nov 6; 284(45): 31473–31483. Published online 2009 Sep 15. doi: 10.1074/jbc.M109.050310
PMCID:
PMC2781543
AbstractArticlePDF–2.7M
18.
Mechanism of polymerase collision release from sliding clamps on the lagging strand
Roxana E Georgescu, Isabel Kurth, Nina Y Yao, Jelena Stewart, Olga Yurieva, Mike O'Donnell
EMBO J. 2009 Oct 7; 28(19): 2981–2991. Published online 2009 Aug 20. doi: 10.1038/emboj.2009.233
PMCID:
PMC2760110
AbstractArticlePDF–1.6M
19.
Temporal Correlation of DNA Binding, ATP Hydrolysis, and Clamp Release in the Clamp Loading Reaction Catalyzed by the Escherichia coli γ complex
Stephen G. Anderson, Jennifer A. Thompson, Christopher O. Paschall, Mike O’Donnell, Linda B. Bloom
Biochemistry. Author manuscript; available in PMC 2010 Sep 15.
Published in final edited form as: Biochemistry. 2009 Sep 15; 48(36): 8516–8527. doi: 10.1021/bi900912a
PMCID:
PMC2759312
AbstractArticlePDF–2.8M
20.
Transposition into replicating DNA occurs through interaction with the processivity factor
Adam R. Parks, Zaoping Li, Qiaojuan Shi, Roisin M. Owens, Moonsoo M. Jin, Joseph E. Peters
Cell. Author manuscript; available in PMC 2010 Aug 21.
Published in final edited form as: Cell. 2009 Aug 21; 138(4): 685–695. doi: 10.1016/j.cell.2009.06.011
PMCID:
PMC2752310
AbstractArticlePDF–1.3M

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