PMC Links for GEO Profiles (Select 35575579) - PMC

Seesandra V. Rajagopala, Patricia Sikorski, Ashwani Kumar, Roberto Mosca, James Vlasblom, Roland Arnold, Jonathan Franca-Koh, Suman B. Pakala, Sadhna Phanse, Arnaud Ceol, Roman Häuser, Gabriella Siszler, Stefan Wuchty, Andrew Emili, Mohan Babu, Patrick Aloy, Rembert Pieper, Peter Uetz

Nat Biotechnol. Author manuscript; available in PMC 2014 Sep 1.

Published in final edited form as: Nat Biotechnol. 2014 Mar; 32(3): 285–290. Published online 2014 Feb 23. doi: 10.1038/nbt.2831

PMCID:: PMC4123855

Abstract Article PDF–1.1M

Select item 39869234.

Collaborative Dynamic DNA Scanning by Nucleotide Excision Repair Proteins Investigated by Single-Molecule Imaging of Quantum-Dot-Labeled Proteins

Neil M. Kad, Hong Wang, Guy G. Kennedy, David M. Warshaw, Bennett Van Houten

Mol Cell. Author manuscript; available in PMC 2014 Apr 15.

Published in final edited form as: Mol Cell. 2010 Mar 12; 37(5): 702–713. doi: 10.1016/j.molcel.2010.02.003

PMCID:: PMC3986923

Abstract Article PDF–563K

Select item 29974665.

The unstructured C-terminal extension of UvrD interacts with UvrB, but is dispensable for nucleotide excision repair

Laura Manelyte, Colin P. Guy, Rachel M. Smith, Mark S. Dillingham, Peter McGlynn, Nigel J. Savery

DNA Repair (Amst) 2009 Nov 2; 8(11): 1300–1310. doi: 10.1016/j.dnarep.2009.08.005

PMCID:: PMC2997466

Abstract Article

Select item 29716946.

Exploring Damage Recognition Models in Prokaryotic Nucleotide Excision Repair with a Benzo[a]pyrene-Derived Lesion in UvrB

Lei Jia, Konstantin Kropachev, Shuang Ding, Bennett Van Houten, Nicholas E. Geacintov, Suse Broyde

Biochemistry. Author manuscript; available in PMC 2010 Nov 3.

Published in final edited form as: Biochemistry. 2009 Sep 29; 48(38): 8948–8957. doi: 10.1021/bi9010072

PMCID:: PMC2971694

Abstract Article PDF–1.6M

Select item 29462297.

Recognition and Incision of Cr(III) Ligand-Conjugated DNA Adducts by the Nucleotide Excision Repair Proteins UvrABC: Importance of the Cr(III)–Purine Moiety in the Enzymatic Reaction

Hirohumi Arakawa, Moon-shong Tang

Chem Res Toxicol. Author manuscript; available in PMC 2010 Sep 27.

Published in final edited form as: Chem Res Toxicol. 2008 Jun; 21(6): 1284–1289. Published online 2008 May 2. doi: 10.1021/tx800046y

PMCID:: PMC2946229

Abstract Article PDF–514K

Select item 28676718.

Controlled degradation by ClpXP protease tunes the levels of the excision repair protein UvrA to the extent of DNA damage

Mihaela Pruteanu, Tania A. Baker

Mol Microbiol. Author manuscript; available in PMC 2010 May 11.

Published in final edited form as: Mol Microbiol. 2009 Feb; 71(4): 912–924. Published online 2008 Dec 18. doi: 10.1111/j.1365-2958.2008.06574.x

PMCID:: PMC2867671

Abstract Article PDF–1.1M

Select item 27299169.

Alkylated DNA damage flipping bridges base and nucleotide excision repair

Julie L. Tubbs, Vitaly Latypov, Sreenivas Kanugula, Amna Butt, Manana Melikishvili, Rolf Kraehenbuehl, Oliver Fleck, Andrew Marriott, Amanda J. Watson, Barbara Verbeek, Gail McGown, Mary Thorncroft, Mauro F. Santibanez-Koref, Christopher Millington, Andrew S. Arvai, Matthew D. Kroeger, Lisa A. Peterson, David M. Williams, Michael G. Fried, Geoffrey P. Margison, Anthony E. Pegg, John A. Tainer

Nature. Author manuscript; available in PMC 2009 Dec 11.

Published in final edited form as: Nature. 2009 Jun 11; 459(7248): 808–813. doi: 10.1038/nature08076

PMCID:: PMC2729916

Abstract Article PDF–1.9M

Select item 270014810.

DNA wrapping is required for DNA damage recognition in the Escherichia coli DNA nucleotide excision repair pathway

Hailin Wang, Meiling Lu, Moon-shong Tang, Bennett Van Houten, J. B. Alexander Ross, Michael Weinfeld, X. Chris Le

Proc Natl Acad Sci U S A. 2009 Aug 4; 106(31): 12849–12854. Published online 2009 Jun 22. doi: 10.1073/pnas.0902281106

PMCID:: PMC2700148

Abstract Article PDF–675K

Select item 268999511.

Crystal structure of the membrane-bound bifunctional transglycosylase PBP1b from Escherichia coli

Ming-Ta Sung, Yen-Ting Lai, Chia-Ying Huang, Lien-Yang Chou, Hao-Wei Shih, Wei-Chieh Cheng, Chi-Huey Wong, Che Ma

Proc Natl Acad Sci U S A. 2009 Jun 2; 106(22): 8824–8829. Published online 2009 May 19. doi: 10.1073/pnas.0904030106

PMCID:: PMC2689995

Abstract Article PDF–1.0M

Select item 266661312.

Stimulation of UvrD Helicase by UvrAB

John Atkinson, Colin P. Guy, Chris J. Cadman, Geri F. Moolenaar, Nora Goosen, Peter McGlynn

J Biol Chem. 2009 Apr 3; 284(14): 9612–9623. doi: 10.1074/jbc.M808030200

PMCID:: PMC2666613

Abstract Article PDF–909K

Select item 266524113.

Single-molecule analysis reveals two separate DNA-binding domains in the Escherichia coli UvrA dimer

Koen Wagner, Geri Moolenaar, John van Noort, Nora Goosen

Nucleic Acids Res. 2009 Apr; 37(6): 1962–1972. Published online 2009 Feb 10. doi: 10.1093/nar/gkp071

PMCID:: PMC2665241

Abstract Article PDF–2.8M

Select item 253369214.

Recognition and Incision of Oxidative Intrastrand Cross-link Lesions by UvrABC Nuclease

Chunang Gu, Qibin Zhang, Zhengguan Yang, Yuesong Wang, Yue Zou, Yinsheng Wang

Biochemistry. Author manuscript; available in PMC 2008 Sep 12.

Published in final edited form as: Biochemistry. 2006 Sep 5; 45(35): 10739–10746. doi: 10.1021/bi060423z

PMCID:: PMC2533692

Abstract Article PDF–3.2M

Select item 168148115.

Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110

Koji Hayashi, Naoki Morooka, Yoshihiro Yamamoto, Katsutoshi Fujita, Katsumi Isono, Sunju Choi, Eiichi Ohtsubo, Tomoya Baba, Barry L Wanner, Hirotada Mori, Takashi Horiuchi

Mol Syst Biol. 2006; 2: 2006.0007. Published online 2006 Feb 21. doi: 10.1038/msb4100049

PMCID:: PMC1681481

Abstract Article PDF–141K

Select item 153896116.

Thermodynamic Characterization of the Interaction of Mutant UvrB Protein with Damaged DNA

Huaxian Ma, Yue Zou

Biochemistry. Author manuscript; available in PMC 2006 Aug 10.

Published in final edited form as: Biochemistry. 2004 Apr 13; 43(14): 4206–4211. doi: 10.1021/bi0359933

PMCID:: PMC1538961

Abstract Article PDF–315K

Select item 145010417.

Effects of DNA Adduct Structure and Sequence Context on Strand Opening of Repair Intermediates and Incision by UvrABC Nuclease

Yue Zou, Steven M. Shell, Charlie Luo, Zhengguan Yang, Christopher D. Utzat, Ashis K. Basu, Nicholas E. Geacintov

Biochemistry. Author manuscript; available in PMC 2006 Apr 28.

Published in final edited form as: Biochemistry. 2003 Nov 4; 42(43): 12654–12661. doi: 10.1021/bi034446e

PMCID:: PMC1450104

Abstract Article PDF–791K

Select item 145010318.

DNA Damage Recognition of Mutated Forms of UvrB Proteins in Nucleotide Excision Repair

Yue Zou, Huaxian Ma, Steven M. Shell, Zhengguan Yang, R. Stephen Lloyd, Irina G. Minko, Youxing Qu, Ying Xu, Nicholas E. Geacintov

Biochemistry. Author manuscript; available in PMC 2006 Apr 28.

Published in final edited form as: Biochemistry. 2004 Apr 13; 43(14): 4196–4205. doi: 10.1021/bi035992a

Correction in:: volume 43 on page 6832

PMCID:: PMC1450103

Abstract Article PDF–928K

Select item 132520019.

Escherichia coli K-12: a cooperatively developed annotation snapshot—2005

Monica Riley, Takashi Abe, Martha B. Arnaud, Mary K.B. Berlyn, Frederick R. Blattner, Roy R. Chaudhuri, Jeremy D. Glasner, Takashi Horiuchi, Ingrid M. Keseler, Takehide Kosuge, Hirotada Mori, Nicole T. Perna, Guy Plunkett, III, Kenneth E. Rudd, Margrethe H. Serres, Gavin H. Thomas, Nicholas R. Thomson, David Wishart, Barry L. Wanner

Nucleic Acids Res. 2006; 34(1): 1–9. Published online 2006 Jan 5. doi: 10.1093/nar/gkj405

PMCID:: PMC1325200

Abstract Article PDF–204K

Select item 129915920.

The DNA repair helicase UvrD is essential for replication fork reversal in replication mutants

Maria Jose Flores, Vladimir Bidnenko, Bénédicte Michel

EMBO Rep. 2004 Oct; 5(10): 983–988. Published online 2004 Sep 17. doi: 10.1038/sj.embor.7400262

PMCID:: PMC1299159

Abstract Article PDF–133K

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