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Items: 1 to 20 of 27

1.
Evidence for a second regulatory binding site on PspF that is occupied by the C-terminal domain of PspA
Eyleen Sabine Heidrich, Thomas Brüser
PLoS One. 2018; 13(6): e0198564. Published online 2018 Jun 15. doi: 10.1371/journal.pone.0198564
PMCID:
PMC6003685
AbstractArticlePDF–19M
2.
A Key Hydrophobic Patch Identified in an AAA+ Protein Essential for Its In Trans Inhibitory Regulation
Nan Zhang, Timothy Simpson, Edward Lawton, Povilas Uzdavinys, Nicolas Joly, Patricia Burrows, Martin Buck
J Mol Biol. 2013 Aug 9; 425(15): 2656–2669. doi: 10.1016/j.jmb.2013.04.024
PMCID:
PMC3791423
AbstractArticle
3.
A common feature from different subunits of a homomeric AAA+ protein contacts three spatially distinct transcription elements
Nan Zhang, Nicolas Joly, Martin Buck
Nucleic Acids Res. 2012 Oct; 40(18): 9139–9152. Published online 2012 Jul 5. doi: 10.1093/nar/gks661
PMCID:
PMC3467059
AbstractArticlePDF–9.7M
4.
ATPase Site Architecture Is Required for Self-Assembly and Remodeling Activity of a Hexameric AAA+ Transcriptional Activator
Nicolas Joly, Nan Zhang, Martin Buck
Mol Cell. 2012 Aug 10; 47(3-8): 484–490. doi: 10.1016/j.molcel.2012.06.012
PMCID:
PMC3419264
AbstractArticle
5.
A Lower-Order Oligomer Form of Phage Shock Protein A (PspA) Stably Associates with the Hexameric AAA+ Transcription Activator Protein PspF for Negative Regulation
Nicolas Joly, Patricia C. Burrows, Christoph Engl, Goran Jovanovic, Martin Buck
J Mol Biol. 2009 Dec 11; 394(4): 764–775. doi: 10.1016/j.jmb.2009.09.055
PMCID:
PMC3128695
AbstractArticle
6.
The Evolution of the Phage Shock Protein Response System: Interplay between Protein Function, Genomic Organization, and System Function
M. Huvet, T. Toni, X. Sheng, T. Thorne, G. Jovanovic, C. Engl, M. Buck, J.W. Pinney, M.P.H. Stumpf
Mol Biol Evol. 2011 Mar; 28(3): 1141–1155. Published online 2010 Nov 8. doi: 10.1093/molbev/msq301
PMCID:
PMC3041696
AbstractArticlePDF–1.1M
7.
The role of the conserved phenylalanine in the σ54-interacting GAFTGA motif of bacterial enhancer binding proteins
Nan Zhang, Nicolas Joly, Patricia C. Burrows, Milija Jovanovic, Siva R. Wigneshweraraj, Martin Buck
Nucleic Acids Res. 2009 Oct; 37(18): 5981–5992. Published online 2009 Aug 19. doi: 10.1093/nar/gkp658
PMCID:
PMC2764435
AbstractArticlePDF–7.0M
8.
Structural Insights Into the Activity of Transcriptional Enhancer-Binding Proteins: The structure of an activator protein in complex with an RNA polymerase subunit suggests how ATP hydrolysis is coupled to conformational changes that activate transcription in bacteria
Mathieu Rappas, Jorg Schumacher, Fabienne Beuron, Hajime Niwa, Patricia Bordes, Sivaramesh Wigneshweraraj, Catherine A Keetch, Carol V Robinson, Martin Buck, Xiaodong Zhang
Science. Author manuscript; available in PMC 2009 Oct 5.
Published in final edited form as: Science. 2005 Mar 25; 307(5717): 1972–1975. doi: 10.1126/science.1105932
PMCID:
PMC2756573
AbstractArticlePDF–1.6M
9.
Functional roles of the pre-sensor I insertion sequence in an AAA+ bacterial enhancer binding protein
Patricia C Burrows, Jörg Schumacher, Samuel Amartey, Tamaswati Ghosh, Timothy A Burgis, Xiaodong Zhang, B Tracy Nixon, Martin Buck
Mol Microbiol. 2009 Aug; 73(4): 519–533. Published online 2009 Jun 23. doi: 10.1111/j.1365-2958.2009.06744.x
PMCID:
PMC2745333
AbstractArticlePDF–957K
10.
Comparative analysis of activator-Eσ54 complexes formed with nucleotide-metal fluoride analogues
Patricia C. Burrows, Nicolas Joly, B. Tracy Nixon, Martin Buck
Nucleic Acids Res. 2009 Aug; 37(15): 5138–5150. Published online 2009 Jun 24. doi: 10.1093/nar/gkp541
PMCID:
PMC2731916
AbstractArticlePDF–5.6M
11.
Regulation and action of the bacterial enhancer-binding protein AAA+ domains
Baoyu Chen, Tatyana A. Sysoeva, Saikat Chowdhury, B. Tracy Nixon
Biochem Soc Trans. Author manuscript; available in PMC 2009 Jun 8.
Published in final edited form as: Biochem Soc Trans. 2008 Feb; 36(Pt 1): 89–93. doi: 10.1042/BST0360089
PMCID:
PMC2692754
AbstractArticlePDF–1.1M
12.
Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110
Koji Hayashi, Naoki Morooka, Yoshihiro Yamamoto, Katsutoshi Fujita, Katsumi Isono, Sunju Choi, Eiichi Ohtsubo, Tomoya Baba, Barry L Wanner, Hirotada Mori, Takashi Horiuchi
Mol Syst Biol. 2006; 2: 2006.0007. Published online 2006 Feb 21. doi: 10.1038/msb4100049
PMCID:
PMC1681481
AbstractArticlePDF–141K
13.
6S RNA Regulation of pspF Transcription Leads to Altered Cell Survival at High pH
Amy E. Trotochaud, Karen M. Wassarman
J Bacteriol. 2006 Jun; 188(11): 3936–3943. doi: 10.1128/JB.00079-06
PMCID:
PMC1482906
AbstractArticlePDF–246K
14.
Escherichia coli K-12: a cooperatively developed annotation snapshot—2005
Monica Riley, Takashi Abe, Martha B. Arnaud, Mary K.B. Berlyn, Frederick R. Blattner, Roy R. Chaudhuri, Jeremy D. Glasner, Takashi Horiuchi, Ingrid M. Keseler, Takehide Kosuge, Hirotada Mori, Nicole T. Perna, Guy Plunkett, III, Kenneth E. Rudd, Margrethe H. Serres, Gavin H. Thomas, Nicholas R. Thomson, David Wishart, Barry L. Wanner
Nucleic Acids Res. 2006; 34(1): 1–9. Published online 2006 Jan 5. doi: 10.1093/nar/gkj405
PMCID:
PMC1325200
AbstractArticlePDF–204K
15.
Sigma54-dependent transcription activator phage shock protein F of Escherichia coli: a fragmentation approach to identify sequences that contribute to self-association.
Patricia Bordes, Siva R Wigneshweraraj, Xiaodong Zhang, Martin Buck
Biochem J. 2004 Mar 15; 378(Pt 3): 735–744. doi: 10.1042/BJ20031464
PMCID:
PMC1224020
SummaryPDF–290K
16.
Molecular Determinants for PspA-Mediated Repression of the AAA Transcriptional Activator PspF
Sarah Elderkin, Patricia Bordes, Susan Jones, Mathieu Rappas, Martin Buck
J Bacteriol. 2005 May; 187(9): 3238–3248. doi: 10.1128/JB.187.9.3238-3248.2005
PMCID:
PMC1082823
AbstractArticlePDF–592K
17.
Distantly related sequences in the alpha- and beta-subunits of ATP synthase, myosin, kinases and other ATP-requiring enzymes and a common nucleotide binding fold.
J E Walker, M Saraste, M J Runswick, N J Gay
EMBO J. 1982; 1(8): 945–951. doi: 10.1002/j.1460-2075.1982.tb01276.x
PMCID:
PMC553140
SummaryPage BrowsePDF–1.3M
18.
Nucleotide-dependent interactions between a fork junction–RNA polymerase complex and an AAA+ transcriptional activator protein
W. V. Cannon, J. Schumacher, M. Buck
Nucleic Acids Res. 2004; 32(15): 4596–4608. Published online 2004 Aug 27. doi: 10.1093/nar/gkh755
PMCID:
PMC516047
AbstractArticlePDF–872K
19.
Binding of transcriptional activators to sigma 54 in the presence of the transition state analog ADP–aluminum fluoride: insights into activator mechanochemical action
Matthew Chaney, Ricardo Grande, Siva R. Wigneshweraraj, Wendy Cannon, Paul Casaz, Maria-Trinidad Gallegos, Jorg Schumacher, Susan Jones, Sarah Elderkin, Angel Ernesto Dago, Enrique Morett, Martin Buck
Genes Dev. 2001 Sep 1; 15(17): 2282–2294. doi: 10.1101/gad.205501
PMCID:
PMC312774
AbstractArticlePDF–903K
20.
Intrinsic and extrinsic approaches for detecting genes in a bacterial genome.
M Borodovsky, K E Rudd, E V Koonin
Nucleic Acids Res. 1994 Nov 11; 22(22): 4756–4767. doi: 10.1093/nar/22.22.4756
PMCID:
PMC308528
SummaryPage BrowsePDF–2.5M

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