PMC Links for GEO Profiles (Select 35577317) - PMC

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Items: 17

Select item 87520941.

Directed evolution of the rRNA methylating enzyme Cfr reveals molecular basis of antibiotic resistance

Kaitlyn Tsai, Vanja Stojković, Lianet Noda-Garcia, Iris D Young, Alexander G Myasnikov, Jordan Kleinman, Ali Palla, Stephen N Floor, Adam Frost, James S Fraser, Dan S Tawfik, Danica Galonić Fujimori

eLife. 2022; 11: e70017. Published online 2022 Jan 11. doi: 10.7554/eLife.70017

PMCID:: PMC8752094

Abstract Article PDF–6.8M

Select item 56299622.

Crystallographic capture of a radical S-adenosylmethionine enzyme in the act of modifying tRNA

Erica L. Schwalm, Tyler L. Grove, Squire J. Booker, Amie K. Boal

Science. Author manuscript; available in PMC 2017 Oct 6.

Published in final edited form as: Science. 2016 Apr 15; 352(6283): 309–312. doi: 10.1126/science.aad5367

PMCID:: PMC5629962

Abstract Article PDF–937K

Select item 53673873.

An indigenous posttranscriptional modification in the ribosomal peptidyl transferase center confers resistance to an array of protein synthesis inhibitors

Seok-Ming Toh, Alexander S. Mankin

J Mol Biol. Author manuscript; available in PMC 2017 Mar 27.

Published in final edited form as: J Mol Biol. 2008 Jul 18; 380(4): 593–597. Published online 2008 May 17. doi: 10.1016/j.jmb.2008.05.027

PMCID:: PMC5367387

Abstract Article PDF–441K

Select item 41238554.

The binary protein-protein interaction landscape of Escherichia coli

Seesandra V. Rajagopala, Patricia Sikorski, Ashwani Kumar, Roberto Mosca, James Vlasblom, Roland Arnold, Jonathan Franca-Koh, Suman B. Pakala, Sadhna Phanse, Arnaud Ceol, Roman Häuser, Gabriella Siszler, Stefan Wuchty, Andrew Emili, Mohan Babu, Patrick Aloy, Rembert Pieper, Peter Uetz

Nat Biotechnol. Author manuscript; available in PMC 2014 Sep 1.

Published in final edited form as: Nat Biotechnol. 2014 Mar; 32(3): 285–290. Published online 2014 Feb 23. doi: 10.1038/nbt.2831

PMCID:: PMC4123855

Abstract Article PDF–1.1M

Select item 35964245.

Cfr and RlmN Contain a Single [4Fe-4S] Cluster, which Directs Two Distinct Reactivities for S-Adenosylmethionine: Methyl Transfer by S_N2 Displacement and Radical Generation

Tyler L. Grove, Matthew I. Radle, Carsten Krebs, Squire J. Booker

J Am Chem Soc. Author manuscript; available in PMC 2013 Mar 13.

Published in final edited form as: J Am Chem Soc. 2011 Dec 14; 133(49): 19586–19589. Published online 2011 Nov 18. doi: 10.1021/ja207327v

PMCID:: PMC3596424

Abstract Article PDF–1.7M

Select item 35062506.

Structural Basis for Methyl Transfer by a Radical SAM Enzyme

Amie K. Boal, Tyler L. Grove, Monica I. McLaughlin, Neela H. Yennawar, Squire J. Booker, Amy C. Rosenzweig

Science. Author manuscript; available in PMC 2012 Nov 26.

Published in final edited form as: Science. 2011 May 27; 332(6033): 1089–1092. Published online 2011 Apr 28. doi: 10.1126/science.1205358

PMCID:: PMC3506250

Abstract Article PDF–2.5M

Select item 34467037.

The Escherichia coli RlmN methyltransferase is a dual-specificity enzyme that modifies both rRNA and tRNA and controls translational accuracy

Alfonso Benítez-Páez, Magda Villarroya, M.-Eugenia Armengod

RNA. 2012 Oct; 18(10): 1783–1795. doi: 10.1261/rna.033266.112

PMCID:: PMC3446703

Abstract Article PDF–1.3M

Select item 28599018.

RlmN and Cfr are Radical SAM Enzymes Involved in Methylation of Ribosomal RNA

Feng Yan, Jacqueline M. LaMarre, Rene Röhrich, Jochen Wiesner, Hassan Jomaa, Alexander S. Mankin, Danica Galonić Fujimori

J Am Chem Soc. Author manuscript; available in PMC 2011 Mar 24.

Published in final edited form as: J Am Chem Soc. 2010 Mar 24; 132(11): 3953–3964. doi: 10.1021/ja910850y

PMCID:: PMC2859901

Abstract Article PDF–2.8M

Select item 26487139.

Identification of 8-methyladenosine as the modification catalyzed by the radical SAM methyltransferase Cfr that confers antibiotic resistance in bacteria

Anders Michael Bernth Giessing, Søren Skov Jensen, Anette Rasmussen, Lykke Haastrup Hansen, Andrzej Gondela, Katherine Long, Birte Vester, Finn Kirpekar

RNA. 2009 Feb; 15(2): 327–336. doi: 10.1261/rna.1371409

PMCID:: PMC2648713

Abstract Article PDF–668K

Select item 229217710.

Protein abundance profiling of the Escherichia coli cytosol

Yasushi Ishihama, Thorsten Schmidt, Juri Rappsilber, Matthias Mann, F Ulrich Hartl, Michael J Kerner, Dmitrij Frishman

BMC Genomics. 2008; 9: 102. Published online 2008 Feb 27. doi: 10.1186/1471-2164-9-102

PMCID:: PMC2292177

Abstract Article PDF–1.0M

Select item 215103211.

The methyltransferase YfgB/RlmN is responsible for modification of adenosine 2503 in 23S rRNA

Seok-Ming Toh, Liqun Xiong, Taeok Bae, Alexander S. Mankin

RNA. 2008 Jan; 14(1): 98–106. doi: 10.1261/rna.814408

PMCID:: PMC2151032

Abstract Article PDF–714K

Select item 168148112.

Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110

Koji Hayashi, Naoki Morooka, Yoshihiro Yamamoto, Katsutoshi Fujita, Katsumi Isono, Sunju Choi, Eiichi Ohtsubo, Tomoya Baba, Barry L Wanner, Hirotada Mori, Takashi Horiuchi

Mol Syst Biol. 2006; 2: 2006.0007. Published online 2006 Feb 21. doi: 10.1038/msb4100049

PMCID:: PMC1681481

Abstract Article PDF–141K

Select item 132520013.

Escherichia coli K-12: a cooperatively developed annotation snapshot—2005

Monica Riley, Takashi Abe, Martha B. Arnaud, Mary K.B. Berlyn, Frederick R. Blattner, Roy R. Chaudhuri, Jeremy D. Glasner, Takashi Horiuchi, Ingrid M. Keseler, Takehide Kosuge, Hirotada Mori, Nicole T. Perna, Guy Plunkett, III, Kenneth E. Rudd, Margrethe H. Serres, Gavin H. Thomas, Nicholas R. Thomson, David Wishart, Barry L. Wanner

Nucleic Acids Res. 2006; 34(1): 1–9. Published online 2006 Jan 5. doi: 10.1093/nar/gkj405