PMC Links for GEO Profiles (Select 35577407) - PMC

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Items: 19

Select item 86436181.

Evolutionary repair reveals an unexpected role of the tRNA modification m¹G37 in aminoacylation

Ben E Clifton, Muhammad A Fariz, Gen-Ichiro Uechi, Paola Laurino

Nucleic Acids Res. 2021 Dec 2; 49(21): 12467–12485. Published online 2021 Nov 11. doi: 10.1093/nar/gkab1067

PMCID:: PMC8643618

Abstract Article PDF–2.6M

Select item 42246002.

A Divalent Metal Ion-Dependent N¹-Methyl Transfer to G37-tRNA

Reiko Sakaguchi, Georges Lahoud, Thomas Christian, Howard Gamper, Ya-Ming Hou

Chem Biol. Author manuscript; available in PMC 2015 Oct 23.

Published in final edited form as: Chem Biol. 2014 Oct 23; 21(10): 1351–1360. Published online 2014 Sep 11. doi: 10.1016/j.chembiol.2014.07.023

PMCID:: PMC4224600

Abstract Article PDF–1.2M

Select item 41238553.

The binary protein-protein interaction landscape of Escherichia coli

Seesandra V. Rajagopala, Patricia Sikorski, Ashwani Kumar, Roberto Mosca, James Vlasblom, Roland Arnold, Jonathan Franca-Koh, Suman B. Pakala, Sadhna Phanse, Arnaud Ceol, Roman Häuser, Gabriella Siszler, Stefan Wuchty, Andrew Emili, Mohan Babu, Patrick Aloy, Rembert Pieper, Peter Uetz

Nat Biotechnol. Author manuscript; available in PMC 2014 Sep 1.

Published in final edited form as: Nat Biotechnol. 2014 Mar; 32(3): 285–290. Published online 2014 Feb 23. doi: 10.1038/nbt.2831

PMCID:: PMC4123855

Abstract Article PDF–1.1M

Select item 35179324.

Studying protein complexes by the yeast two-hybrid system

Seesandra V. Rajagopala, Patricia Sikorski, J. Harry Caufield, Andrey Tovchigrechko, Peter Uetz

Methods. Author manuscript; available in PMC 2013 Dec 1.

Published in final edited form as: Methods. 2012 Dec; 58(4): 392–399. Published online 2012 Jul 24. doi: 10.1016/j.ymeth.2012.07.015

PMCID:: PMC3517932

Abstract Article PDF–2.4M

Select item 28921035.

Control of Catalytic Cycle by A Pair of Analogous tRNA Modification Enzymes

Thomas Christian, Georges Lahoud, Cuiping Liu, Ya-Ming Hou

J Mol Biol. Author manuscript; available in PMC 2011 Jul 9.

Published in final edited form as: J Mol Biol. 2010 Jul 9; 400(2): 204–217. Published online 2010 May 7. doi: 10.1016/j.jmb.2010.05.003

PMCID:: PMC2892103

Abstract Article PDF–4.4M

Select item 24474556.

Comparative Genomic Assessment of Novel Broad-Spectrum Targets for Antibacterial Drugs

Thomas A. White, Douglas B. Kell

Comp Funct Genomics. 2004 Jun; 5(4): 304–327. doi: 10.1002/cfg.411

PMCID:: PMC2447455

Summary PDF–1.7M

Select item 22921777.

Protein abundance profiling of the Escherichia coli cytosol

Yasushi Ishihama, Thorsten Schmidt, Juri Rappsilber, Matthias Mann, F Ulrich Hartl, Michael J Kerner, Dmitrij Frishman

BMC Genomics. 2008; 9: 102. Published online 2008 Feb 27. doi: 10.1186/1471-2164-9-102

PMCID:: PMC2292177

Abstract Article PDF–1.0M

Select item 20640708.

Distinct Determinants of tRNA Recognition by the TrmD and Trm5 Methyl Transferases

Thomas Christian, Ya-Ming Hou

J Mol Biol. Author manuscript; available in PMC 2008 Oct 26.

Published in final edited form as: J Mol Biol. 2007 Oct 26; 373(3): 623–632. Published online 2007 Aug 21. doi: 10.1016/j.jmb.2007.08.010

PMCID:: PMC2064070

Abstract Article PDF–882K

Select item 16814829.

Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection

Tomoya Baba, Takeshi Ara, Miki Hasegawa, Yuki Takai, Yoshiko Okumura, Miki Baba, Kirill A Datsenko, Masaru Tomita, Barry L Wanner, Hirotada Mori

Mol Syst Biol. 2006; 2: 2006.0008. Published online 2006 Feb 21. doi: 10.1038/msb4100050

PMCID:: PMC1681482

Abstract Article PDF–400K

Select item 168148110.

Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110

Koji Hayashi, Naoki Morooka, Yoshihiro Yamamoto, Katsutoshi Fujita, Katsumi Isono, Sunju Choi, Eiichi Ohtsubo, Tomoya Baba, Barry L Wanner, Hirotada Mori, Takashi Horiuchi

Mol Syst Biol. 2006; 2: 2006.0007. Published online 2006 Feb 21. doi: 10.1038/msb4100049

PMCID:: PMC1681481

Abstract Article PDF–141K

Select item 136957111.

tRNA recognition for modification: solution probing of tRNA complexed with Escherichia coli tRNA (guanosine-1) methyltransferase.

J Gabryszuk, W M Holmes

RNA. 1997 Nov; 3(11): 1327–1336.

PMCID:: PMC1369571

Summary PDF–25M

Select item 132520012.

Escherichia coli K-12: a cooperatively developed annotation snapshot—2005

Monica Riley, Takashi Abe, Martha B. Arnaud, Mary K.B. Berlyn, Frederick R. Blattner, Roy R. Chaudhuri, Jeremy D. Glasner, Takashi Horiuchi, Ingrid M. Keseler, Takehide Kosuge, Hirotada Mori, Nicole T. Perna, Guy Plunkett, III, Kenneth E. Rudd, Margrethe H. Serres, Gavin H. Thomas, Nicholas R. Thomson, David Wishart, Barry L. Wanner

Nucleic Acids Res. 2006; 34(1): 1–9. Published online 2006 Jan 5. doi: 10.1093/nar/gkj405