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Items: 18

1.
RsfA (YbeB) Proteins Are Conserved Ribosomal Silencing Factors
Roman Häuser, Markus Pech, Jaroslaw Kijek, Hiroshi Yamamoto, Björn Titz, Florian Naeve, Andrey Tovchigrechko, Kaori Yamamoto, Witold Szaflarski, Nono Takeuchi, Thorsten Stellberger, Markus E. Diefenbacher, Knud H. Nierhaus, Peter Uetz
PLoS Genet. 2012 Jul; 8(7): e1002815. Published online 2012 Jul 19. doi: 10.1371/journal.pgen.1002815
PMCID:
PMC3400551
AbstractArticlePDF–824K
2.
YajL, Prokaryotic Homolog of Parkinsonism-associated Protein DJ-1, Functions as a Covalent Chaperone for Thiol Proteome
Hai-Tuong Le, Valérie Gautier, Fatoum Kthiri, Abderrahim Malki, Nadia Messaoudi, Mouadh Mihoub, Ahmed Landoulsi, Young Jun An, Sun-Shin Cha, Gilbert Richarme
J Biol Chem. 2012 Feb 17; 287(8): 5861–5870. Published online 2011 Dec 7. doi: 10.1074/jbc.M111.299198
PMCID:
PMC3285355
AbstractArticlePDF–1.2M
3.
Structures of the ribosome in intermediate states of ratcheting
Wen Zhang, Jack Dunkle, Jamie H. D. Cate
Science. Author manuscript; available in PMC 2010 Aug 10.
Published in final edited form as: Science. 2009 Aug 21; 325(5943): 1014–1017. doi: 10.1126/science.1175275
PMCID:
PMC2919209
AbstractArticlePDF–2.2M
4.
Early Transcriptional Arrest at Escherichia coli rplN and ompX Promoters
Ekaterina Stepanova, Minshi Wang, Konstantin Severinov, Sergei Borukhov
J Biol Chem. 2009 Dec 18; 284(51): 35702–35713. Published online 2009 Oct 23. doi: 10.1074/jbc.M109.053983
PMCID:
PMC2791001
AbstractArticlePDF–4.0M
5.
Regulation of the protein-conducting channel by a bound ribosome
James Gumbart, Leonardo G. Trabuco, Eduard Schreiner, Elizabeth Villa, Klaus Schulten
Structure. Author manuscript; available in PMC 2010 Nov 11.
Published in final edited form as: Structure. 2009 Nov 11; 17(11): 1453–1464. doi: 10.1016/j.str.2009.09.010
PMCID:
PMC2778611
AbstractArticlePDF–3.1M
6.
Quantifying changes in the thiol redox proteome upon oxidative stress in vivo
Lars I. Leichert, Florian Gehrke, Harini V. Gudiseva, Tom Blackwell, Marianne Ilbert, Angela K. Walker, John R. Strahler, Philip C. Andrews, Ursula Jakob
Proc Natl Acad Sci U S A. 2008 Jun 17; 105(24): 8197–8202. Published online 2008 Feb 14. doi: 10.1073/pnas.0707723105
PMCID:
PMC2448814
AbstractArticlePDF–628K
7.
Protein abundance profiling of the Escherichia coli cytosol
Yasushi Ishihama, Thorsten Schmidt, Juri Rappsilber, Matthias Mann, F Ulrich Hartl, Michael J Kerner, Dmitrij Frishman
BMC Genomics. 2008; 9: 102. Published online 2008 Feb 27. doi: 10.1186/1471-2164-9-102
PMCID:
PMC2292177
AbstractArticlePDF–1.0M
8.
Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection
Tomoya Baba, Takeshi Ara, Miki Hasegawa, Yuki Takai, Yoshiko Okumura, Miki Baba, Kirill A Datsenko, Masaru Tomita, Barry L Wanner, Hirotada Mori
Mol Syst Biol. 2006; 2: 2006.0008. Published online 2006 Feb 21. doi: 10.1038/msb4100050
PMCID:
PMC1681482
AbstractArticlePDF–400K
9.
Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110
Koji Hayashi, Naoki Morooka, Yoshihiro Yamamoto, Katsutoshi Fujita, Katsumi Isono, Sunju Choi, Eiichi Ohtsubo, Tomoya Baba, Barry L Wanner, Hirotada Mori, Takashi Horiuchi
Mol Syst Biol. 2006; 2: 2006.0007. Published online 2006 Feb 21. doi: 10.1038/msb4100049
PMCID:
PMC1681481
AbstractArticlePDF–141K
10.
Large-scale identification of protein–protein interaction of Escherichia coli K-12
Mohammad Arifuzzaman, Maki Maeda, Aya Itoh, Kensaku Nishikata, Chiharu Takita, Rintaro Saito, Takeshi Ara, Kenji Nakahigashi, Hsuan-Cheng Huang, Aki Hirai, Kohei Tsuzuki, Seira Nakamura, Mohammad Altaf-Ul-Amin, Taku Oshima, Tomoya Baba, Natsuko Yamamoto, Tomoyo Kawamura, Tomoko Ioka-Nakamichi, Masanari Kitagawa, Masaru Tomita, Shigehiko Kanaya, Chieko Wada, Hirotada Mori
Genome Res. 2006 May; 16(5): 686–691. doi: 10.1101/gr.4527806
PMCID:
PMC1457052
AbstractArticlePDF–536K
11.
Escherichia coli K-12: a cooperatively developed annotation snapshot—2005
Monica Riley, Takashi Abe, Martha B. Arnaud, Mary K.B. Berlyn, Frederick R. Blattner, Roy R. Chaudhuri, Jeremy D. Glasner, Takashi Horiuchi, Ingrid M. Keseler, Takehide Kosuge, Hirotada Mori, Nicole T. Perna, Guy Plunkett, III, Kenneth E. Rudd, Margrethe H. Serres, Gavin H. Thomas, Nicholas R. Thomson, David Wishart, Barry L. Wanner
Nucleic Acids Res. 2006; 34(1): 1–9. Published online 2006 Jan 5. doi: 10.1093/nar/gkj405
PMCID:
PMC1325200
AbstractArticlePDF–204K
12.
Protein-rRNA binding features and their structural and functional implications in ribosomes as determined by cross-linking studies.
H Urlaub, V Kruft, O Bischof, E C Müller, B Wittmann-Liebold
EMBO J. 1995 Sep 15; 14(18): 4578–4588. doi: 10.1002/j.1460-2075.1995.tb00137.x
PMCID:
PMC394550
SummaryPage BrowsePDF–2.5M
13.
Localization of a series of RNA-protein cross-link sites in the 23S and 5S ribosomal RNA from Escherichia coli, induced by treatment of 50S subunits with three different bifunctional reagents.
M Osswald, B Greuer, R Brimacombe
Nucleic Acids Res. 1990 Dec 11; 18(23): 6755–6760. doi: 10.1093/nar/18.23.6755
PMCID:
PMC332727
SummaryPage BrowsePDF–1.3M
14.
The DNA unwinding reaction catalyzed by Rep protein is facilitated by an RHSP-DNA interaction.
J E Yancey, S W Matson
Nucleic Acids Res. 1991 Jul 25; 19(14): 3943–3951. doi: 10.1093/nar/19.14.3943
PMCID:
PMC328487
SummaryPage BrowsePDF–1.9M
15.
The spc ribosomal protein operon of Escherichia coli: sequence and cotranscription of the ribosomal protein genes and a protein export gene.
D P Cerretti, D Dean, G R Davis, D M Bedwell, M Nomura
Nucleic Acids Res. 1983 May 11; 11(9): 2599–2616. doi: 10.1093/nar/11.9.2599
Correction in:
Nucleic Acids Res. 1983 Sep 10; 11(17): 6156.
PMCID:
PMC325911
SummaryPage BrowsePDF–1.4M
16.
Ribosomal Proteins, XII. Number of Proteins in Small and Large Ribosomal Subunits of Escherichia coli as Determined by Two-Dimensional Gel Electrophoresis
E. Kaltschmidt, H. G. Wittmann
Proc Natl Acad Sci U S A. 1970 Nov; 67(3): 1276–1282. doi: 10.1073/pnas.67.3.1276
PMCID:
PMC283348
SummaryPage BrowsePDF–2.3M
17.
Feedback regulation of the spc operon in Escherichia coli: translational coupling and mRNA processing.
L C Mattheakis, M Nomura
J Bacteriol. 1988 Oct; 170(10): 4484–4492. doi: 10.1128/jb.170.10.4484-4492.1988
PMCID:
PMC211480
SummaryPage BrowsePDF–1.9M
18.
Factors Influencing the Identification of Transcription Factor Binding Sites by Cross-Species Comparison
Lee Ann McCue, William Thompson, C. Steven Carmack, Charles E. Lawrence
Genome Res. 2002 Oct; 12(10): 1523–1532. doi: 10.1101/gr.323602
PMCID:
PMC187528
AbstractArticlePDF–192K

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