PMC Links for GEO Profiles (Select 35581231) - PMC

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Links from GEO Profiles

Items: 19

Select item 80531021.

A ProQ/FinO family protein involved in plasmid copy number control favours fitness of bacteria carrying mcr-1-bearing IncI2 plasmids

Jun Yang, Hai-Hong Wang, Yaoyao Lu, Ling-Xian Yi, Yinyue Deng, Luchao Lv, Vincent Burrus, Jian-Hua Liu

Nucleic Acids Res. 2021 Apr 19; 49(7): 3981–3996. Published online 2021 Mar 15. doi: 10.1093/nar/gkab149

PMCID:: PMC8053102

Abstract Article PDF–3.9M

Select item 73671732.

Determinants of RNA recognition by the FinO domain of the Escherichia coli ProQ protein

Ewa M Stein, Joanna Kwiatkowska, Maciej M Basczok, Chandra M Gravel, Katherine E Berry, Mikołaj Olejniczak

Nucleic Acids Res. 2020 Jul 27; 48(13): 7502–7519. Published online 2020 Jun 15. doi: 10.1093/nar/gkaa497

PMCID:: PMC7367173

Abstract Article PDF–9.3M

Select item 71926073.

Genetic identification of the functional surface for RNA binding by Escherichia coli ProQ

Smriti Pandey, Chandra M Gravel, Oliver M Stockert, Clara D Wang, Courtney L Hegner, Hannah LeBlanc, Katherine E Berry

Nucleic Acids Res. 2020 May 7; 48(8): 4507–4520. Published online 2020 Mar 14. doi: 10.1093/nar/gkaa144

PMCID:: PMC7192607

Abstract Article PDF–3.2M

Select item 53931794.

Structure of the Escherichia coli ProQ RNA-binding protein

Grecia M. Gonzalez, Steven W. Hardwick, Sarah L. Maslen, J. Mark Skehel, Erik Holmqvist, Jörg Vogel, Alex Bateman, Ben F. Luisi, R. William Broadhurst

RNA. 2017 May; 23(5): 696–711. doi: 10.1261/rna.060343.116

PMCID:: PMC5393179

Abstract Article PDF–2.4M

Select item 41238555.

The binary protein-protein interaction landscape of Escherichia coli

Seesandra V. Rajagopala, Patricia Sikorski, Ashwani Kumar, Roberto Mosca, James Vlasblom, Roland Arnold, Jonathan Franca-Koh, Suman B. Pakala, Sadhna Phanse, Arnaud Ceol, Roman Häuser, Gabriella Siszler, Stefan Wuchty, Andrew Emili, Mohan Babu, Patrick Aloy, Rembert Pieper, Peter Uetz

Nat Biotechnol. Author manuscript; available in PMC 2014 Sep 1.

Published in final edited form as: Nat Biotechnol. 2014 Mar; 32(3): 285–290. Published online 2014 Feb 23. doi: 10.1038/nbt.2831

PMCID:: PMC4123855

Abstract Article PDF–1.1M

Select item 39577216.

Salinity-Dependent Impacts of ProQ, Prc, and Spr Deficiencies on Escherichia coli Cell Structure

Craig H. Kerr, Doreen E. Culham, David Marom, Janet M. Wood

J Bacteriol. 2014 Mar; 196(6): 1286–1296. doi: 10.1128/JB.00827-13

PMCID:: PMC3957721

Abstract Article PDF–2.0M

Select item 38083557.

Analysis and Expansion of the Role of the Escherichia coli Protein ProQ

Daniel T. Sheidy, Ryszard A. Zielke

PLoS One. 2013; 8(10): e79656. Published online 2013 Oct 25. doi: 10.1371/journal.pone.0079656

PMCID:: PMC3808355

Abstract Article PDF–836K

Select item 35366268.

Phyletic Profiling with Cliques of Orthologs Is Enhanced by Signatures of Paralogy Relationships

Nives Škunca, Matko Bošnjak, Anita Kriško, Panče Panov, Sašo Džeroski, Tomislav Šmuc, Fran Supek

PLoS Comput Biol. 2013 Jan; 9(1): e1002852. Published online 2013 Jan 3. doi: 10.1371/journal.pcbi.1002852

PMCID:: PMC3536626

Abstract Article PDF–1.8M

Select item 24488149.

Quantifying changes in the thiol redox proteome upon oxidative stress in vivo

Lars I. Leichert, Florian Gehrke, Harini V. Gudiseva, Tom Blackwell, Marianne Ilbert, Angela K. Walker, John R. Strahler, Philip C. Andrews, Ursula Jakob

Proc Natl Acad Sci U S A. 2008 Jun 17; 105(24): 8197–8202. Published online 2008 Feb 14. doi: 10.1073/pnas.0707723105

PMCID:: PMC2448814

Abstract Article PDF–628K

Select item 229217710.

Protein abundance profiling of the Escherichia coli cytosol

Yasushi Ishihama, Thorsten Schmidt, Juri Rappsilber, Matthias Mann, F Ulrich Hartl, Michael J Kerner, Dmitrij Frishman

BMC Genomics. 2008; 9: 102. Published online 2008 Feb 27. doi: 10.1186/1471-2164-9-102

PMCID:: PMC2292177

Abstract Article PDF–1.0M

Select item 168148111.

Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110

Koji Hayashi, Naoki Morooka, Yoshihiro Yamamoto, Katsutoshi Fujita, Katsumi Isono, Sunju Choi, Eiichi Ohtsubo, Tomoya Baba, Barry L Wanner, Hirotada Mori, Takashi Horiuchi

Mol Syst Biol. 2006; 2: 2006.0007. Published online 2006 Feb 21. doi: 10.1038/msb4100049

PMCID:: PMC1681481

Abstract Article PDF–141K

Select item 132520012.

Escherichia coli K-12: a cooperatively developed annotation snapshot—2005

Monica Riley, Takashi Abe, Martha B. Arnaud, Mary K.B. Berlyn, Frederick R. Blattner, Roy R. Chaudhuri, Jeremy D. Glasner, Takashi Horiuchi, Ingrid M. Keseler, Takehide Kosuge, Hirotada Mori, Nicole T. Perna, Guy Plunkett, III, Kenneth E. Rudd, Margrethe H. Serres, Gavin H. Thomas, Nicholas R. Thomson, David Wishart, Barry L. Wanner

Nucleic Acids Res. 2006; 34(1): 1–9. Published online 2006 Jan 5. doi: 10.1093/nar/gkj405

PMCID:: PMC1325200

Abstract Article PDF–204K

Select item 41944513.

Identification and functional analysis of ‘hypothetical’ genes expressed in Haemophilus influenzae

Eugene Kolker, Kira S. Makarova, Svetlana Shabalina, Alex F. Picone, Samuel Purvine, Ted Holzman, Tim Cherny, David Armbruster, Robert S. Munson, Jr, Grigory Kolesov, Dmitrij Frishman, Michael Y. Galperin

Nucleic Acids Res. 2004; 32(8): 2353–2361. Published online 2004 Apr 30. doi: 10.1093/nar/gkh555