PMC Links for GEO Profiles (Select 35585014) - PMC

Seesandra V. Rajagopala, Patricia Sikorski, Ashwani Kumar, Roberto Mosca, James Vlasblom, Roland Arnold, Jonathan Franca-Koh, Suman B. Pakala, Sadhna Phanse, Arnaud Ceol, Roman Häuser, Gabriella Siszler, Stefan Wuchty, Andrew Emili, Mohan Babu, Patrick Aloy, Rembert Pieper, Peter Uetz

Nat Biotechnol. Author manuscript; available in PMC 2014 Sep 1.

Published in final edited form as: Nat Biotechnol. 2014 Mar; 32(3): 285–290. Published online 2014 Feb 23. doi: 10.1038/nbt.2831

PMCID:: PMC4123855

Abstract Article PDF–1.1M

Select item 37336694.

Detection of L-Lactate In Polyethylene Glycol Solutions Confirms Identity of Active Site Ligand in Proline Dehydrogenase Structure

Min Zhang, John J. Tanner

Acta Crystallogr D Biol Crystallogr. Author manuscript; available in PMC 2013 Aug 5.

Published in final edited form as: Acta Crystallogr D Biol Crystallogr. 2004 May; 60(0 5): 985–986. Published online 2004 Apr 21. doi: 10.1107/S0907444904003786

PMCID:: PMC3733669

Abstract Article PDF–416K

Select item 37317505.

Involvement of the β3-α3 loop of the Proline Dehydrogenase Domain in Allosteric Regulation of Membrane Association of Proline Utilization A

Weidong Zhu, Ashley M. Haile, Ranjan K. Singh, John D. Larson, Danielle Smithen, Jie Y. Chan, John J. Tanner, Donald F. Becker

Biochemistry. Author manuscript; available in PMC 2014 Jul 2.

Published in final edited form as: Biochemistry. 2013 Jul 2; 52(26): 4482–4491. Published online 2013 Jun 19. doi: 10.1021/bi400396g

PMCID:: PMC3731750

Abstract Article PDF–1.2M

Select item 37272466.

Structure of the proline dehydrogenase domain of the multifunctional PutA flavoprotein

Yong-Hwan Lee, Shorena Nadaraia, Dan Gu, Donald F. Becker, John J. Tanner

Nat Struct Biol. Author manuscript; available in PMC 2013 Jul 30.

Published in final edited form as: Nat Struct Biol. 2003 Feb; 10(2): 109–114. doi: 10.1038/nsb885

PMCID:: PMC3727246

Abstract Article PDF–1.7M

Select item 37272437.

Structures of the Escherichia coli PutA proline dehydrogenase domain in complex with competitive inhibitors

Min Zhang, Tommi A. White, Jonathan P. Schuermann, Berevan A. Baban, Donald F. Becker, John J. Tanner

Biochemistry. Author manuscript; available in PMC 2013 Jul 30.

Published in final edited form as: Biochemistry. 2004 Oct 5; 43(39): 12539–12548. doi: 10.1021/bi048737e

PMCID:: PMC3727243

Abstract Article PDF–3.3M

Select item 37272378.

Structure of the Proline Utilization A Proline Dehydrogenase Domain Inactivated by N-propargylglycine Provides Insight into Conformational Changes Induced by Substrate Binding and Flavin Reduction

Dhiraj Srivastava, Weidong Zhu, William H. Johnson, Jr., Christian P. Whitman, Donald F. Becker, John J. Tanner

Biochemistry. Author manuscript; available in PMC 2013 Jul 30.

Published in final edited form as: Biochemistry. 2010 Jan 26; 49(3): 560–569. doi: 10.1021/bi901717s

PMCID:: PMC3727237

Abstract Article PDF–1.8M

Select item 32348679.

Small-angle X-ray Scattering Studies of the Oligomeric State and Quaternary Structure of the Trifunctional Proline Utilization A (PutA) Flavoprotein from Escherichia coli

Ranjan K. Singh, John D. Larson, Weidong Zhu, Robert P. Rambo, Greg L. Hura, Donald F. Becker, John J. Tanner

J Biol Chem. 2011 Dec 16; 286(50): 43144–43153. Published online 2011 Oct 19. doi: 10.1074/jbc.M111.292474

PMCID:: PMC3234867

Abstract Article PDF–2.1M

Select item 322327510.

Steady-State Kinetic Mechanism of the Proline:Ubiquinone Oxidoreductase Activity of Proline Utilization A (PutA) from Escherichia coli

Michael A. Moxley, John J. Tanner, Donald F. Becker

Arch Biochem Biophys. Author manuscript; available in PMC 2012 Dec 15.

Published in final edited form as: Arch Biochem Biophys. 2011 Dec 15; 516(2): 113–120. Published online 2011 Oct 25. doi: 10.1016/j.abb.2011.10.011

PMCID:: PMC3223275

Abstract Article PDF–1.2M

Select item 266692911.

Direct linking of metabolism and gene expression in the proline utilization A protein from Escherichia coli

Yuzhen Zhou, Weidong Zhu, Padmanetra S. Bellur, Dustin Rewinkel, Donald F. Becker

Amino Acids. Author manuscript; available in PMC 2009 Nov 1.

Published in final edited form as: Amino Acids. 2008 Nov; 35(4): 711–718. Published online 2008 Mar 7. doi: 10.1007/s00726-008-0053-6

PMCID:: PMC2666929

Abstract Article PDF–872K

Select item 266503212.

Structural Basis of Transcriptional Regulation of the Proline Utilization Regulon by Multifunctional PutA

Yuzhen Zhou, John D. Larson, Christopher A. Bottoms, Emilia C. Arturo, Michael T. Henzl, Jermaine L. Jenkins, Jay C. Nix, Donald F. Becker, John J. Tanner

J Mol Biol. Author manuscript; available in PMC 2009 Apr 3.

Published in final edited form as: J Mol Biol. 2008 Aug 1; 381(1): 174–188. Published online 2008 Jun 7. doi: 10.1016/j.jmb.2008.05.084

PMCID:: PMC2665032

Abstract Article PDF–3.8M

Select item 266502213.

A Conserved Active Site Tyrosine Residue of Proline Dehydrogenase Helps Enforce the Preference for Proline over Hydroxyproline as the Substrate

Elizabeth L. Ostrander, John D. Larson, Jonathan P. Schuermann, John J. Tanner

Biochemistry. Author manuscript; available in PMC 2010 Feb 10.

Published in final edited form as: Biochemistry. 2009 Feb 10; 48(5): 951–959. doi: 10.1021/bi802094k

PMCID:: PMC2665022

Abstract Article PDF–3.3M

Select item 252773914.

Redox induced changes in flavin structure and the roles of the flavin N(5) and ribityl 2′-OH in regulating PutA-membrane binding

Weimin Zhang, Min Zhang, Weidong Zhu, Yuzhen Zhou, Srimevan Wanduragala, Dustin Rewinkel, John J. Tanner, Donald F. Becker

Biochemistry. Author manuscript; available in PMC 2008 Sep 2.

Published in final edited form as: Biochemistry. 2007 Jan 16; 46(2): 483–491. doi: 10.1021/bi061935g

PMCID:: PMC2527739

Abstract Article PDF–2.1M

Select item 224241615.

Crystal structures of the DNA-binding domain of Escherichia coli proline utilization A flavoprotein and analysis of the role of Lys9 in DNA recognition

John D. Larson, Jermaine L. Jenkins, Jonathan P. Schuermann, Yuzhen Zhou, Donald F. Becker, John J. Tanner

Protein Sci. 2006 Nov; 15(11): 2630–2641. doi: 10.1110/ps.062425706

PMCID:: PMC2242416

Abstract Article PDF–617K

Select item 168148116.

Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110

Koji Hayashi, Naoki Morooka, Yoshihiro Yamamoto, Katsutoshi Fujita, Katsumi Isono, Sunju Choi, Eiichi Ohtsubo, Tomoya Baba, Barry L Wanner, Hirotada Mori, Takashi Horiuchi

Mol Syst Biol. 2006; 2: 2006.0007. Published online 2006 Feb 21. doi: 10.1038/msb4100049

PMCID:: PMC1681481

Abstract Article PDF–141K

Select item 151315517.

Regulation of PutA-Membrane Associations by FAD Reduction

Weimin Zhang, Yuzhen Zhou, Donald F. Becker

Biochemistry. Author manuscript; available in PMC 2006 Jul 19.

Published in final edited form as: Biochemistry. 2004 Oct 19; 43(41): 13165–13174. doi: 10.1021/bi048596g

PMCID:: PMC1513155

Abstract Article PDF–462K

Select item 145705218.

Large-scale identification of protein–protein interaction of Escherichia coli K-12

Mohammad Arifuzzaman, Maki Maeda, Aya Itoh, Kensaku Nishikata, Chiharu Takita, Rintaro Saito, Takeshi Ara, Kenji Nakahigashi, Hsuan-Cheng Huang, Aki Hirai, Kohei Tsuzuki, Seira Nakamura, Mohammad Altaf-Ul-Amin, Taku Oshima, Tomoya Baba, Natsuko Yamamoto, Tomoyo Kawamura, Tomoko Ioka-Nakamichi, Masanari Kitagawa, Masaru Tomita, Shigehiko Kanaya, Chieko Wada, Hirotada Mori

Genome Res. 2006 May; 16(5): 686–691. doi: 10.1101/gr.4527806