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Select item 56299211.

Structural Analysis of Substrate Binding by the Molecular Chaperone DnaK

Xiaotian Zhu, Xun Zhao, William F. Burkholder, Alexander Gragerov, Craig M. Ogata, Max E. Gottesman, Wayne A. Hendrickson

Science. Author manuscript; available in PMC 2017 Oct 6.

Published in final edited form as: Science. 1996 Jun 14; 272(5268): 1606–1614. doi: 10.1126/science.272.5268.1606

PMCID:: PMC5629921

Abstract Article PDF–899K

Select item 48072812.

Glutathionylation of the Bacterial Hsp70 Chaperone DnaK Provides a Link between Oxidative Stress and the Heat Shock Response

Hong Zhang, Jie Yang, Si Wu, Weibin Gong, Chang Chen, Sarah Perrett

J Biol Chem. 2016 Mar 25; 291(13): 6967–6981. Published online 2016 Jan 28. doi: 10.1074/jbc.M115.673608

PMCID:: PMC4807281

Abstract Article PDF–3.8M

Select item 44003243.

Modulation of the Chaperone DnaK Allosterism by the Nucleotide Exchange Factor GrpE

Roberto Melero, Fernando Moro, María Ángeles Pérez-Calvo, Judit Perales-Calvo, Lucía Quintana-Gallardo, Oscar Llorca, Arturo Muga, José María Valpuesta

J Biol Chem. 2015 Apr 17; 290(16): 10083–10092. Published online 2015 Mar 4. doi: 10.1074/jbc.M114.623371

PMCID:: PMC4400324

Abstract Article PDF–1.6M

Select item 42975174.

Interplay between E. coli DnaK, ClpB and GrpE during protein disaggregation

Shannon M. Doyle, Shankar Shastry, Andrea N. Kravats, Yu-Hsuan Shih, Marika Miot, Joel R. Hoskins, George Stan, Sue Wickner

J Mol Biol. Author manuscript; available in PMC 2016 Jan 30.

Published in final edited form as: J Mol Biol. 2015 Jan 30; 427(2): 312–327. Published online 2014 Oct 29. doi: 10.1016/j.jmb.2014.10.013

PMCID:: PMC4297517

Abstract Article PDF–1.6M

Select item 41238555.

The binary protein-protein interaction landscape of Escherichia coli

Seesandra V. Rajagopala, Patricia Sikorski, Ashwani Kumar, Roberto Mosca, James Vlasblom, Roland Arnold, Jonathan Franca-Koh, Suman B. Pakala, Sadhna Phanse, Arnaud Ceol, Roman Häuser, Gabriella Siszler, Stefan Wuchty, Andrew Emili, Mohan Babu, Patrick Aloy, Rembert Pieper, Peter Uetz

Nat Biotechnol. Author manuscript; available in PMC 2014 Sep 1.

Published in final edited form as: Nat Biotechnol. 2014 Mar; 32(3): 285–290. Published online 2014 Feb 23. doi: 10.1038/nbt.2831

PMCID:: PMC4123855

Abstract Article PDF–1.1M

Select item 34305356.

Prokaryotic Chaperones Support Yeast Prions and Thermotolerance and Define Disaggregation Machinery Interactions

Michael Reidy, Marika Miot, Daniel C. Masison

Genetics. 2012 Sep; 192(1): 185–193. doi: 10.1534/genetics.112.142307

PMCID:: PMC3430535

Abstract Article PDF–6.5M

Select item 26726147.

Global Functional Atlas of Escherichia coli Encompassing Previously Uncharacterized Proteins

Pingzhao Hu, Sarath Chandra Janga, Mohan Babu, J. Javier Díaz-Mejía, Gareth Butland, Wenhong Yang, Oxana Pogoutse, Xinghua Guo, Sadhna Phanse, Peter Wong, Shamanta Chandran, Constantine Christopoulos, Anaies Nazarians-Armavil, Negin Karimi Nasseri, Gabriel Musso, Mehrab Ali, Nazila Nazemof, Veronika Eroukova, Ashkan Golshani, Alberto Paccanaro, Jack F Greenblatt, Gabriel Moreno-Hagelsieb, Andrew Emili

PLoS Biol. 2009 Apr; 7(4): e1000096. Published online 2009 Apr 28. doi: 10.1371/journal.pbio.1000096

PMCID:: PMC2672614

Abstract Article

Select item 25648248.

A Water Mediated Electrostatic Interaction Gives Thermal Stability to the “Tail” Region of the GrpE Protein from E. coli

Andrew F. Mehl, Borries Demeler, Afaq Zraikat

Protein J. Author manuscript; available in PMC 2008 Oct 8.

Published in final edited form as: Protein J. 2007 Jun; 26(4): 239–245. doi: 10.1007/s10930-006-9065-9

PMCID:: PMC2564824

Abstract Article PDF–637K

Select item 25331489.

The Hsp70 chaperone system maintains high concentrations of active proteins and suppresses ATP consumption during heat shock

Bin Hu, Masaru Tomita

Syst Synth Biol. 2007 Mar; 1(1): 47–58. Published online 2007 Jan 26. doi: 10.1007/s11693-006-9004-2

PMCID:: PMC2533148

Abstract Article PDF–516K

Select item 232388510.

Insights into dimerization and four-helix bundle formation found by dissection of the dimer interface of the GrpE protein from Escherichia coli

Andrew F. Mehl, Luke D. Heskett, Sumesh S. Jain, Borries Demeler

Protein Sci. 2003 Jun; 12(6): 1205–1215. doi: 10.1110/ps.0300803

PMCID:: PMC2323885

Abstract Article PDF–540K

Select item 229217711.

Protein abundance profiling of the Escherichia coli cytosol

Yasushi Ishihama, Thorsten Schmidt, Juri Rappsilber, Matthias Mann, F Ulrich Hartl, Michael J Kerner, Dmitrij Frishman

BMC Genomics. 2008; 9: 102. Published online 2008 Feb 27. doi: 10.1186/1471-2164-9-102

PMCID:: PMC2292177

Abstract Article PDF–1.0M

Select item 168148212.

Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection

Tomoya Baba, Takeshi Ara, Miki Hasegawa, Yuki Takai, Yoshiko Okumura, Miki Baba, Kirill A Datsenko, Masaru Tomita, Barry L Wanner, Hirotada Mori

Mol Syst Biol. 2006; 2: 2006.0008. Published online 2006 Feb 21. doi: 10.1038/msb4100050

PMCID:: PMC1681482

Abstract Article PDF–400K

Select item 168148113.

Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110

Koji Hayashi, Naoki Morooka, Yoshihiro Yamamoto, Katsutoshi Fujita, Katsumi Isono, Sunju Choi, Eiichi Ohtsubo, Tomoya Baba, Barry L Wanner, Hirotada Mori, Takashi Horiuchi

Mol Syst Biol. 2006; 2: 2006.0007. Published online 2006 Feb 21. doi: 10.1038/msb4100049

PMCID:: PMC1681481

Abstract Article PDF–141K

Select item 152207414.

Regulon and promoter analysis of the E. coli heat-shock factor, σ³², reveals a multifaceted cellular response to heat stress

Gen Nonaka, Matthew Blankschien, Christophe Herman, Carol A. Gross, Virgil A. Rhodius

Genes Dev. 2006 Jul 1; 20(13): 1776–1789. doi: 10.1101/gad.1428206

PMCID:: PMC1522074

Abstract Article PDF–548K

Select item 145705215.

Large-scale identification of protein–protein interaction of Escherichia coli K-12

Mohammad Arifuzzaman, Maki Maeda, Aya Itoh, Kensaku Nishikata, Chiharu Takita, Rintaro Saito, Takeshi Ara, Kenji Nakahigashi, Hsuan-Cheng Huang, Aki Hirai, Kohei Tsuzuki, Seira Nakamura, Mohammad Altaf-Ul-Amin, Taku Oshima, Tomoya Baba, Natsuko Yamamoto, Tomoyo Kawamura, Tomoko Ioka-Nakamichi, Masanari Kitagawa, Masaru Tomita, Shigehiko Kanaya, Chieko Wada, Hirotada Mori

Genome Res. 2006 May; 16(5): 686–691. doi: 10.1101/gr.4527806

PMCID:: PMC1457052

Abstract Article PDF–536K

Select item 132520016.

Escherichia coli K-12: a cooperatively developed annotation snapshot—2005

Monica Riley, Takashi Abe, Martha B. Arnaud, Mary K.B. Berlyn, Frederick R. Blattner, Roy R. Chaudhuri, Jeremy D. Glasner, Takashi Horiuchi, Ingrid M. Keseler, Takehide Kosuge, Hirotada Mori, Nicole T. Perna, Guy Plunkett, III, Kenneth E. Rudd, Margrethe H. Serres, Gavin H. Thomas, Nicholas R. Thomson, David Wishart, Barry L. Wanner

Nucleic Acids Res. 2006; 34(1): 1–9. Published online 2006 Jan 5. doi: 10.1093/nar/gkj405