PMC Links for GEO Profiles (Select 35590883) - PMC

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Items: 18

Select item 41238551.

The binary protein-protein interaction landscape of Escherichia coli

Seesandra V. Rajagopala, Patricia Sikorski, Ashwani Kumar, Roberto Mosca, James Vlasblom, Roland Arnold, Jonathan Franca-Koh, Suman B. Pakala, Sadhna Phanse, Arnaud Ceol, Roman Häuser, Gabriella Siszler, Stefan Wuchty, Andrew Emili, Mohan Babu, Patrick Aloy, Rembert Pieper, Peter Uetz

Nat Biotechnol. Author manuscript; available in PMC 2014 Sep 1.

Published in final edited form as: Nat Biotechnol. 2014 Mar; 32(3): 285–290. Published online 2014 Feb 23. doi: 10.1038/nbt.2831

PMCID:: PMC4123855

Abstract Article PDF–1.1M

Select item 32853552.

YajL, Prokaryotic Homolog of Parkinsonism-associated Protein DJ-1, Functions as a Covalent Chaperone for Thiol Proteome

Hai-Tuong Le, Valérie Gautier, Fatoum Kthiri, Abderrahim Malki, Nadia Messaoudi, Mouadh Mihoub, Ahmed Landoulsi, Young Jun An, Sun-Shin Cha, Gilbert Richarme

J Biol Chem. 2012 Feb 17; 287(8): 5861–5870. Published online 2011 Dec 7. doi: 10.1074/jbc.M111.299198

PMCID:: PMC3285355

Abstract Article PDF–1.2M

Select item 27249683.

Were there any “misassignments” among iron–sulfur clusters N4, N5 and N6b in NADH-quinone oxidoreductase (complex I)?

Tomoko Ohnishi, Eiko Nakamaru-Ogiso

Biochim Biophys Acta. Author manuscript; available in PMC 2009 Aug 11.

Published in final edited form as: Biochim Biophys Acta. 2008; 1777(7-8): 703–710. Published online 2008 Apr 30. doi: 10.1016/j.bbabio.2008.04.032

PMCID:: PMC2724968

Abstract Article PDF–1.1M

Select item 25338004.

Iron-Sulfur Cluster N5 Is Coordinated by an HXXXCXXCXXXXXC Motif in the NuoG Subunit of Escherichia coli NADH:Quinone Oxidoreductase (Complex I)

Eiko Nakamaru-Ogiso, Akemi Matsuno-Yagi, Shinya Yoshikawa, Takao Yagi, Tomoko Ohnishi

J Biol Chem. 2008 Sep 19; 283(38): 25979–25987. doi: 10.1074/jbc.M804015200

PMCID:: PMC2533800

Abstract Article PDF–694K

Select item 22688145.

Real-time electron transfer in respiratory complex I

Marina L. Verkhovskaya, Nikolai Belevich, Liliya Euro, Mårten Wikström, Michael I. Verkhovsky

Proc Natl Acad Sci U S A. 2008 Mar 11; 105(10): 3763–3767. Published online 2008 Mar 3. doi: 10.1073/pnas.0711249105

PMCID:: PMC2268814

Abstract Article PDF–533K

Select item 19250376.

Reevaluating the relationship between EPR spectra and enzyme structure for the iron–sulfur clusters in NADH:quinone oxidoreductase

Gregory Yakovlev, Torsten Reda, Judy Hirst

Proc Natl Acad Sci U S A. 2007 Jul 31; 104(31): 12720–12725. Published online 2007 Jul 19. doi: 10.1073/pnas.0705593104

PMCID:: PMC1925037

Abstract Article PDF–669K

Select item 16814817.

Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110

Koji Hayashi, Naoki Morooka, Yoshihiro Yamamoto, Katsutoshi Fujita, Katsumi Isono, Sunju Choi, Eiichi Ohtsubo, Tomoya Baba, Barry L Wanner, Hirotada Mori, Takashi Horiuchi

Mol Syst Biol. 2006; 2: 2006.0007. Published online 2006 Feb 21. doi: 10.1038/msb4100049

PMCID:: PMC1681481

Abstract Article PDF–141K

Select item 14570528.

Large-scale identification of protein–protein interaction of Escherichia coli K-12

Mohammad Arifuzzaman, Maki Maeda, Aya Itoh, Kensaku Nishikata, Chiharu Takita, Rintaro Saito, Takeshi Ara, Kenji Nakahigashi, Hsuan-Cheng Huang, Aki Hirai, Kohei Tsuzuki, Seira Nakamura, Mohammad Altaf-Ul-Amin, Taku Oshima, Tomoya Baba, Natsuko Yamamoto, Tomoyo Kawamura, Tomoko Ioka-Nakamichi, Masanari Kitagawa, Masaru Tomita, Shigehiko Kanaya, Chieko Wada, Hirotada Mori

Genome Res. 2006 May; 16(5): 686–691. doi: 10.1101/gr.4527806

PMCID:: PMC1457052

Abstract Article PDF–536K

Select item 13343859.

TCDB: the Transporter Classification Database for membrane transport protein analyses and information

Milton H. Saier, Jr, Can V. Tran, Ravi D. Barabote

Nucleic Acids Res. 2006 Jan 1; 34(Database issue): D181–D186. Published online 2005 Dec 28. doi: 10.1093/nar/gkj001

PMCID:: PMC1334385

Abstract Article PDF–550K

Select item 132520010.

Escherichia coli K-12: a cooperatively developed annotation snapshot—2005

Monica Riley, Takashi Abe, Martha B. Arnaud, Mary K.B. Berlyn, Frederick R. Blattner, Roy R. Chaudhuri, Jeremy D. Glasner, Takashi Horiuchi, Ingrid M. Keseler, Takehide Kosuge, Hirotada Mori, Nicole T. Perna, Guy Plunkett, III, Kenneth E. Rudd, Margrethe H. Serres, Gavin H. Thomas, Nicholas R. Thomson, David Wishart, Barry L. Wanner

Nucleic Acids Res. 2006; 34(1): 1–9. Published online 2006 Jan 5. doi: 10.1093/nar/gkj405

PMCID:: PMC1325200

Abstract Article PDF–204K

Select item 20662211.

Escherichia coli mutants lacking NADH dehydrogenase I have a competitive disadvantage in stationary phase.

M M Zambrano, R Kolter

J Bacteriol. 1993 Sep; 175(17): 5642–5647. doi: 10.1128/jb.175.17.5642-5647.1993

PMCID:: PMC206622

Summary Page Browse PDF–1.0M

Select item 20533212.

Mutations in NADH:ubiquinone oxidoreductase of Escherichia coli affect growth on mixed amino acids.

B M Prüss, J M Nelms, C Park, A J Wolfe

J Bacteriol. 1994 Apr; 176(8): 2143–2150. doi: 10.1128/jb.176.8.2143-2150.1994

PMCID:: PMC205332

Summary Page Browse PDF–1.6M

Select item 20462113.

Energetic efficiency of Escherichia coli: effects of mutations in components of the aerobic respiratory chain.

M W Calhoun, K L Oden, R B Gennis, M J de Mattos, O M Neijssel

J Bacteriol. 1993 May; 175(10): 3020–3025. doi: 10.1128/jb.175.10.3020-3025.1993

PMCID:: PMC204621

Summary Page Browse PDF–1.1M

Select item 20462014.

Demonstration of separate genetic loci encoding distinct membrane-bound respiratory NADH dehydrogenases in Escherichia coli.

M W Calhoun, R B Gennis

J Bacteriol. 1993 May; 175(10): 3013–3019. doi: 10.1128/jb.175.10.3013-3019.1993

PMCID:: PMC204620

Summary Page Browse PDF–1.4M

Select item 17849515.

H+/e- stoichiometry for NADH dehydrogenase I and dimethyl sulfoxide reductase in anaerobically grown Escherichia coli cells.

A V Bogachev, R A Murtazina, V P Skulachev

J Bacteriol. 1996 Nov; 178(21): 6233–6237. doi: 10.1128/jb.178.21.6233-6237.1996

PMCID:: PMC178495

Summary PDF–239K

Select item 17688916.

Transcriptional control of the nuo operon which encodes the energy-conserving NADH dehydrogenase of Salmonella typhimurium.

C D Archer, T Elliott

J Bacteriol. 1995 May; 177(9): 2335–2342. doi: 10.1128/jb.177.9.2335-2342.1995

PMCID:: PMC176889

Summary PDF–336K

Select item 10700517.

Genetic Analysis of the nuo Locus, Which Encodes the Proton-Translocating NADH Dehydrogenase in Escherichia coli

Holly J. Falk-Krzesinski, Alan J. Wolfe

J Bacteriol. 1998 Mar; 180(5): 1174–1184. doi: 10.1128/jb.180.5.1174-1184.1998

PMCID:: PMC107005

Abstract Article PDF–1.0M

Select item 3547918.

Adenosine diphosphate sugar pyrophosphatase prevents glycogen biosynthesis in Escherichia coli

Beatriz Moreno-Bruna, Edurne Baroja-Fernández, Francisco José Muñoz, Ainara Bastarrica-Berasategui, Aitor Zandueta-Criado, Milagros Rodríguez-López, Iñigo Lasa, Takashi Akazawa, Javier Pozueta-Romero

Proc Natl Acad Sci U S A. 2001 Jul 3; 98(14): 8128–8132. Published online 2001 Jun 19. doi: 10.1073/pnas.131214098