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Select item 102946411.

Mutations in AcrR and RNA Polymerase Confer High-Level Resistance to Psoralen-UVA Irradiation

Travis K. Worley, Emma A. Weber, Jedidiah D. Acott, Rahul S. Shimpi, Jessica M. Cole, Charmain T. Courcelle, Justin Courcelle

J Bacteriol. 2023 Jun; 205(6): e00126-23. Published online 2023 May 30. doi: 10.1128/jb.00126-23

PMCID:: PMC10294641

Abstract Article PDF–2.7M

Select item 81008692.

RNA polymerase alpha subunit recognizes the DNA shape of the Upstream Promoter element

Samuel Lara-Gonzalez, Ana Carolina Dantas Machado, Satyanarayan Rao, Andrew A. Napoli, Jens Birktoft, Rosa Di Felice, Remo Rohs, Catherine L. Lawson

Biochemistry. Author manuscript; available in PMC 2021 Dec 8.

Published in final edited form as: Biochemistry. 2020 Dec 8; 59(48): 4523–4532. Published online 2020 Nov 18. doi: 10.1021/acs.biochem.0c00571

PMCID:: PMC8100869

Abstract Article PDF–1.5M

Select item 67378933.

Maintaining Integrity Under Stress: Envelope Stress Response Regulation of Pathogenesis in Gram-Negative Bacteria

Claire L. Hews, Timothy Cho, Gary Rowley, Tracy L. Raivio

Front Cell Infect Microbiol. 2019; 9: 313. Published online 2019 Sep 4. doi: 10.3389/fcimb.2019.00313

PMCID:: PMC6737893

Abstract Article PDF–1.5M

Select item 66488964.

Structures and mechanism of transcription initiation by bacterial ECF factors

Chengli Fang, Lingting Li, Liqiang Shen, Jing Shi, Sheng Wang, Yu Feng, Yu Zhang

Nucleic Acids Res. 2019 Jul 26; 47(13): 7094–7104. Published online 2019 May 27. doi: 10.1093/nar/gkz470

PMCID:: PMC6648896

Abstract Article PDF–4.0M

Select item 59499865.

Cryo-EM structure of Escherichia coli σ⁷⁰ RNA polymerase and promoter DNA complex revealed a role of σ non-conserved region during the open complex formation

Anoop Narayanan, Frank S. Vago, Kunpeng Li, M. Zuhaib Qayyum, Dinesh Yernool, Wen Jiang, Katsuhiko S. Murakami

J Biol Chem. 2018 May 11; 293(19): 7367–7375. Published online 2018 Mar 26. doi: 10.1074/jbc.RA118.002161

PMCID:: PMC5949986

Abstract Article PDF–2.8M

Select item 57376416.

Phenotypic consequences of RNA polymerase dysregulation in Escherichia coli

Paramita Sarkar, Amy Switzer, Christine Peters, Joe Pogliano, Sivaramesh Wigneshweraraj

Nucleic Acids Res. 2017 Nov 2; 45(19): 11131–11143. Published online 2017 Aug 23. doi: 10.1093/nar/gkx733

PMCID:: PMC5737641

Abstract Article PDF–4.0M

Select item 54932967.

The whole set of the constitutive promoters recognized by four minor sigma subunits of Escherichia coli RNA polymerase

Tomohiro Shimada, Kan Tanaka, Akira Ishihama

PLoS One. 2017; 12(6): e0179181. Published online 2017 Jun 30. doi: 10.1371/journal.pone.0179181

PMCID:: PMC5493296

Abstract Article PDF–4.7M

Select item 50870718.

Backtracked and paused transcription initiation intermediate of Escherichia coli RNA polymerase

Eitan Lerner, SangYoon Chung, Benjamin L. Allen, Shuang Wang, Jookyung Lee, Shijia W. Lu, Logan W. Grimaud, Antonino Ingargiola, Xavier Michalet, Yazan Alhadid, Sergei Borukhov, Terence R. Strick, Dylan J. Taatjes, Shimon Weiss

Proc Natl Acad Sci U S A. 2016 Oct 25; 113(43): E6562–E6571. Published online 2016 Oct 11. doi: 10.1073/pnas.1605038113

PMCID:: PMC5087071

Abstract Article PDF–1.4M

Select item 50146139.

Characterization of molecular interactions between E. coli RNA polymerase and topoisomerase I by molecular simulations

Purushottam Babu Tiwari, Prem P. Chapagain, Srikanth Banda, Yesim Darici, Aykut Üren, Yuk-Ching Tse-Dinh

FEBS Lett. Author manuscript; available in PMC 2017 Sep 1.

Published in final edited form as: FEBS Lett. 2016 Sep; 590(17): 2844–2851. Published online 2016 Aug 4. doi: 10.1002/1873-3468.12321

PMCID:: PMC5014613

Abstract Article PDF–1.5M

Select item 493732810.

Transcription is regulated by NusA:NusG interaction

Martin Strauß, Christal Vitiello, Kristian Schweimer, Max Gottesman, Paul Rösch, Stefan H. Knauer

Nucleic Acids Res. 2016 Jul 8; 44(12): 5971–5982. Published online 2016 May 12. doi: 10.1093/nar/gkw423

PMCID:: PMC4937328

Abstract Article PDF–9.0M

Select item 491129611.

A two-way street: regulatory interplay between RNA polymerase and nascent RNA structure

Jinwei Zhang, Robert Landick

Trends Biochem Sci. Author manuscript; available in PMC 2017 Apr 1.

Published in final edited form as: Trends Biochem Sci. 2016 Apr; 41(4): 293–310. Published online 2016 Jan 25. doi: 10.1016/j.tibs.2015.12.009

PMCID:: PMC4911296

Abstract Article PDF–1.5M

Select item 482407312.

Ribonucleoprotein particles of bacterial small non-coding RNA IsrA (IS61 or McaS) and its interaction with RNA polymerase core may link transcription to mRNA fate

Rob W. van Nues, Daniel Castro-Roa, Yulia Yuzenkova, Nikolay Zenkin

Nucleic Acids Res. 2016 Apr 7; 44(6): 2577–2592. Published online 2015 Nov 24. doi: 10.1093/nar/gkv1302

PMCID:: PMC4824073

Abstract Article PDF–6.4M

Select item 482407013.

Effects of cooperation between translating ribosome and RNA polymerase on termination efficiency of the Rho-independent terminator

Rui Li, Qing Zhang, Junbai Li, Hualin Shi

Nucleic Acids Res. 2016 Apr 7; 44(6): 2554–2563. Published online 2015 Nov 23. doi: 10.1093/nar/gkv1285

PMCID:: PMC4824070

Abstract Article PDF–1.7M

Select item 467407614.

Regulation of Transcript Elongation

Georgiy A. Belogurov, Irina Artsimovitch

Annu Rev Microbiol. Author manuscript; available in PMC 2016 Oct 15.

Published in final edited form as: Annu Rev Microbiol. 2015 Oct 15; 69: 49–69. Published online 2015 Jun 24. doi: 10.1146/annurev-micro-091014-104047

PMCID:: PMC4674076

Abstract Article PDF–1.2M

Select item 428717615.

Unusual interaction of RNA polymerase with the bacteriophage Mu middle promoter P_m in the absence of its activator protein Mor

Yongkai Mo, Martha M Howe

Microbiologyopen. 2014 Aug; 3(4): 470–483. Published online 2014 Jun 10. doi: 10.1002/mbo3.181

PMCID:: PMC4287176

Abstract Article PDF–1.6M

Select item 388718216.

Antisense Oligonucleotide-stimulated Transcriptional Pausing Reveals RNA Exit Channel Specificity of RNA Polymerase and Mechanistic Contributions of NusA and RfaH

Kellie E. Kolb, Pyae P. Hein, Robert Landick

J Biol Chem. 2014 Jan 10; 289(2): 1151–1163. Published online 2013 Nov 25. doi: 10.1074/jbc.M113.521393

PMCID:: PMC3887182

Abstract Article PDF–2.3M

Select item 361098517.

X-ray Crystal Structure of Escherichia coli RNA Polymerase σ⁷⁰ Holoenzyme

Katsuhiko S. Murakami

J Biol Chem. 2013 Mar 29; 288(13): 9126–9134. Published online 2013 Feb 6. doi: 10.1074/jbc.M112.430900

PMCID:: PMC3610985

Abstract Article PDF–2.3M

Select item 344596718.

Repression by Cyclic AMP Receptor Protein at a Distance

David J. Lee, Stephen J. W. Busby

mBio. 2012 Sep-Oct; 3(5): e00289-12. Published online 2012 Sep 11. doi: 10.1128/mBio.00289-12

PMCID:: PMC3445967

Abstract Article PDF–390K

Select item 328535519.

YajL, Prokaryotic Homolog of Parkinsonism-associated Protein DJ-1, Functions as a Covalent Chaperone for Thiol Proteome

Hai-Tuong Le, Valérie Gautier, Fatoum Kthiri, Abderrahim Malki, Nadia Messaoudi, Mouadh Mihoub, Ahmed Landoulsi, Young Jun An, Sun-Shin Cha, Gilbert Richarme

J Biol Chem. 2012 Feb 17; 287(8): 5861–5870. Published online 2011 Dec 7. doi: 10.1074/jbc.M111.299198