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Select item 58295791.

Two-step interrogation then recognition of DNA binding site by Integration Host Factor: an architectural DNA-bending protein

Yogambigai Velmurugu, Paula Vivas, Mitchell Connolly, Serguei V Kuznetsov, Phoebe A Rice, Anjum Ansari

Nucleic Acids Res. 2018 Feb 28; 46(4): 1741–1755. Published online 2017 Dec 18. doi: 10.1093/nar/gkx1215

PMCID:: PMC5829579

Abstract Article PDF–2.8M

Select item 54545332.

Optimized fragmentation schemes and data analysis strategies for proteome-wide cross-link identification

Fan Liu, Philip Lössl, Richard Scheltema, Rosa Viner, Albert J. R. Heck

Nat Commun. 2017; 8: 15473. Published online 2017 May 19. doi: 10.1038/ncomms15473

PMCID:: PMC5454533

Abstract Article PDF–1.5M

Select item 46773513.

Regulation of Bacterial DNA Packaging in Early Stationary Phase by Competitive DNA Binding of Dps and IHF

Sin Yi Lee, Ci Ji Lim, Peter Dröge, Jie Yan

Sci Rep. 2015; 5: 18146. Published online 2015 Dec 14. doi: 10.1038/srep18146

PMCID:: PMC4677351

Abstract Article PDF–1.5M

Select item 33338574.

Genomic analysis of DNA binding and gene regulation by homologous nucleoid-associated proteins IHF and HU in Escherichia coli K12

Ana I. Prieto, Christina Kahramanoglou, Ruhi M. Ali, Gillian M. Fraser, Aswin S. N. Seshasayee, Nicholas M. Luscombe

Nucleic Acids Res. 2012 Apr; 40(8): 3524–3537. Published online 2011 Dec 16. doi: 10.1093/nar/gkr1236

PMCID:: PMC3333857

Abstract Article PDF–3.2M

Select item 27725005.

Protein and DNA Effectors Control the TraI Conjugative Helicase of Plasmid R1

Marta V. Sut, Sanja Mihajlovic, Silvia Lang, Christian J. Gruber, Ellen L. Zechner

J Bacteriol. 2009 Nov; 191(22): 6888–6899. Published online 2009 Sep 18. doi: 10.1128/JB.00920-09

PMCID:: PMC2772500

Abstract Article PDF–1.1M

Select item 23368986.

Formation of A Wrapped DNA-Protein Interface: Expermental Characterization and Analysis of the Large Contributions of Ions and Water to the Thermodynamics of Binding IHF to H′DNA

Kirk A. Vander Meulen, Ruth M. Saecker, M. Thomas Record, Jr.

J Mol Biol. Author manuscript; available in PMC 2009 Mar 14.

Published in final edited form as: J Mol Biol. 2008 Mar 14; 377(1): 9–27. Published online 2007 Dec 7. doi: 10.1016/j.jmb.2007.11.104

PMCID:: PMC2336898

Abstract Article PDF–4.5M

Select item 22921777.

Protein abundance profiling of the Escherichia coli cytosol

Yasushi Ishihama, Thorsten Schmidt, Juri Rappsilber, Matthias Mann, F Ulrich Hartl, Michael J Kerner, Dmitrij Frishman

BMC Genomics. 2008; 9: 102. Published online 2008 Feb 27. doi: 10.1186/1471-2164-9-102

PMCID:: PMC2292177

Abstract Article PDF–1.0M

Select item 21685998.

TrwC-Mediated Site-Specific Recombination Is Controlled by Host Factors Altering Local DNA Topology

Carolina Elvira César, Matxalen Llosa

J Bacteriol. 2007 Dec; 189(24): 9037–9043. Published online 2007 Oct 5. doi: 10.1128/JB.01152-07

PMCID:: PMC2168599

Abstract Article PDF–408K

Select item 20256679.

Molecular Beacon-Equilibrium Cyclization Detection of DNA-Protein Complexes

Jason Vitko, Iulian Rujan, Lagu Androga, Ishita Mukerji, Philip H. Bolton

Biophys J. 2007 Nov 1; 93(9): 3210–3217. Published online 2007 Jul 13. doi: 10.1529/biophysj.106.097642

PMCID:: PMC2025667

Abstract Article PDF–433K

Select item 191947310.

Effects of nucleoid proteins on DNA repression loop formation in Escherichia coli

Nicole A. Becker, Jason D. Kahn, L. James Maher, III

Nucleic Acids Res. 2007 Jun; 35(12): 3988–4000. Published online 2007 Jun 6. doi: 10.1093/nar/gkm419

PMCID:: PMC1919473

Abstract Article PDF–862K

Select item 189217111.

DNA Looping Generated by DNA Bending Protein IHF and the Two Domains of Lambda Integrase

Lina Moitoso De Vargas, Sunghoon Kim, Arthur Landy

Science. Author manuscript; available in PMC 2007 Jun 15.

Published in final edited form as: Science. 1989 Jun 23; 244(4911): 1457–1461. doi: 10.1126/science.2544029

PMCID:: PMC1892171

Abstract Article PDF–670K

Select item 186695612.

Architecture of the 99 bp DNA-Six-Protein Regulatory Complex of the λ att Site

Xingmin Sun, Dale F. Mierke, Tapan Biswas, Sang Yeol Lee, Arthur Landy, Marta Radman-Livaja

Mol Cell. Author manuscript; available in PMC 2007 May 10.

Published in final edited form as: Mol Cell. 2006 Nov 17; 24(4): 569–580. doi: 10.1016/j.molcel.2006.10.006

PMCID:: PMC1866956

Abstract Article PDF–1.3M

Select item 178409513.

Integration of regulatory signals through involvement of multiple global regulators: control of the Escherichia coli gltBDF operon by Lrp, IHF, Crp, and ArgR

Ligi Paul, Pankaj K Mishra, Robert M Blumenthal, Rowena G Matthews

BMC Microbiol. 2007; 7: 2. Published online 2007 Jan 18. doi: 10.1186/1471-2180-7-2

PMCID:: PMC1784095

Abstract Article PDF–2.1M

Select item 168148114.

Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110

Koji Hayashi, Naoki Morooka, Yoshihiro Yamamoto, Katsutoshi Fujita, Katsumi Isono, Sunju Choi, Eiichi Ohtsubo, Tomoya Baba, Barry L Wanner, Hirotada Mori, Takashi Horiuchi

Mol Syst Biol. 2006; 2: 2006.0007. Published online 2006 Feb 21. doi: 10.1038/msb4100049

PMCID:: PMC1681481

Abstract Article PDF–141K

Select item 165697115.

Direct observation of DNA bending/unbending kinetics in complex with DNA-bending protein IHF

Serguei V. Kuznetsov, Sawako Sugimura, Paula Vivas, Donald M. Crothers, Anjum Ansari

Proc Natl Acad Sci U S A. 2006 Dec 5; 103(49): 18515–18520. Published online 2006 Nov 21. doi: 10.1073/pnas.0608394103

PMCID:: PMC1656971

Abstract Article PDF–1.1M

Select item 165413416.

Stepwise binding and bending of DNA by Escherichia coli integration host factor

Sawako Sugimura, Donald M. Crothers

Proc Natl Acad Sci U S A. 2006 Dec 5; 103(49): 18510–18514. Published online 2006 Nov 20. doi: 10.1073/pnas.0608337103

PMCID:: PMC1654134

Abstract Article PDF–470K

Select item 163635217.

Association of nucleoid proteins with coding and non-coding segments of the Escherichia coli genome

David C. Grainger, Douglas Hurd, Martin D. Goldberg, Stephen J. W. Busby

Nucleic Acids Res. 2006 Sep; 34(16): 4642–4652. Published online 2006 Sep 8. doi: 10.1093/nar/gkl542

PMCID:: PMC1636352

Abstract Article PDF–920K

Select item 163628818.

The Escherichia coli K-12 NarL and NarP Proteins Insulate the nrf Promoter from the Effects of Integration Host Factor

Douglas F. Browning, David J. Lee, Alan J. Wolfe, Jeffrey A. Cole, Stephen J. W. Busby

J Bacteriol. 2006 Nov; 188(21): 7449–7456. Published online 2006 Aug 25. doi: 10.1128/JB.00975-06

PMCID:: PMC1636288

Abstract Article PDF–491K

Select item 159000019.

Viewing single λ site-specific recombination events from start to finish

Jeffrey P Mumm, Arthur Landy, Jeff Gelles

EMBO J. 2006 Oct 4; 25(19): 4586–4595. Published online 2006 Sep 14. doi: 10.1038/sj.emboj.7601325

PMCID:: PMC1590000

Abstract Article PDF–1.2M

Select item 132520020.

Escherichia coli K-12: a cooperatively developed annotation snapshot—2005

Monica Riley, Takashi Abe, Martha B. Arnaud, Mary K.B. Berlyn, Frederick R. Blattner, Roy R. Chaudhuri, Jeremy D. Glasner, Takashi Horiuchi, Ingrid M. Keseler, Takehide Kosuge, Hirotada Mori, Nicole T. Perna, Guy Plunkett, III, Kenneth E. Rudd, Margrethe H. Serres, Gavin H. Thomas, Nicholas R. Thomson, David Wishart, Barry L. Wanner

Nucleic Acids Res. 2006; 34(1): 1–9. Published online 2006 Jan 5. doi: 10.1093/nar/gkj405