PMC Links for GEO Profiles (Select 35600561) - PMC

Select item 94279901.

Dynamic mechanisms of CRISPR interference by Escherichia coli CRISPR-Cas3

Kazuto Yoshimi, Kohei Takeshita, Noriyuki Kodera, Satomi Shibumura, Yuko Yamauchi, Mine Omatsu, Kenichi Umeda, Yayoi Kunihiro, Masaki Yamamoto, Tomoji Mashimo

Nat Commun. 2022; 13: 4917. Published online 2022 Aug 30. doi: 10.1038/s41467-022-32618-0

PMCID:: PMC9427990

Abstract Article PDF–3.7M

Select item 80015332.

A Tryptophan ‘Gate’ in the CRISPR-Cas3 Nuclease Controls ssDNA Entry into the Nuclease Site, That When Removed Results in Nuclease Hyperactivity

Liu He, Zoe Jelić Matošević, Damjan Mitić, Dora Markulin, Tom Killelea, Marija Matković, Branimir Bertoša, Ivana Ivančić-Baće, Edward L. Bolt

Int J Mol Sci. 2021 Mar; 22(6): 2848. Published online 2021 Mar 11. doi: 10.3390/ijms22062848

PMCID:: PMC8001533

Abstract Article PDF–3.6M

Select item 70197583.

Glycine Cleavage System and cAMP Receptor Protein Co-Regulate CRISPR/cas3 Expression to Resist Bacteriophage

Denghui Yang, Zhaofei Wang, Jingjiao Ma, Qiang Fu, Lifei Wu, Hengan Wang, Shaohui Wang, Yaxian Yan, Jianhe Sun

Viruses. 2020 Jan; 12(1): 90. Published online 2020 Jan 13. doi: 10.3390/v12010090

PMCID:: PMC7019758

Abstract Article PDF–12M

Select item 65943924.

Secret Weapon

Ryland F. Young, III

Science. Author manuscript; available in PMC 2019 Jun 26.

Published in final edited form as: Science. 2008 Aug 15; 321(5891): 922–923. doi: 10.1126/science.1162910

PMCID:: PMC6594392

Article PDF–250K

Select item 58982355.

Small CRISPR RNAs Guide Antiviral Defense in Prokaryotes

Stan J. J. Brouns, Matthijs M. Jore, Magnus Lundgren, Edze R. Westra, Rik J. H. Slijkhuis, Ambrosius P. L. Snijders, Mark J. Dickman, Kira S. Makarova, Eugene V. Koonin, John van der Oost

Science. Author manuscript; available in PMC 2018 Apr 13.

Published in final edited form as: Science. 2008 Aug 15; 321(5891): 960–964. doi: 10.1126/science.1159689

PMCID:: PMC5898235

Abstract Article PDF–503K

Select item 47823916.

Cas3 is a limiting factor for CRISPR-Cas immunity in Escherichia coli cells lacking H-NS

Kristina Majsec, Edward L. Bolt, Ivana Ivančić-Baće

BMC Microbiol. 2016; 16: 28. Published online 2016 Mar 8. doi: 10.1186/s12866-016-0643-5

PMCID:: PMC4782391

Abstract Article PDF–693K

Select item 46369417.

Surveillance and processing of foreign DNA by the Escherichia coli CRISPR-Cas system

Sy Redding, Samuel H. Sternberg, Myles Marshall, Bryan Gibb, Prashant Bhat, Chantal K. Guegler, Blake Wiedenheft, Jennifer A. Doudna, Eric C. Greene

Cell. Author manuscript; available in PMC 2016 Nov 5.

Published in final edited form as: Cell. 2015 Nov 5; 163(4): 854–865. doi: 10.1016/j.cell.2015.10.003

PMCID:: PMC4636941

Abstract Article PDF–2.6M

Select item 37373358.

Cas3 stimulates runaway replication of a ColE1 plasmid in Escherichia coli and antagonises RNaseHI

Ivana Ivančić-Baće, Marin Radovčić, Luka Bočkor, Jamieson L. Howard, Edward L. Bolt

RNA Biol. 2013 May 1; 10(5): 770–778. Published online 2013 Feb 13. doi: 10.4161/rna.23876

PMCID:: PMC3737335

Abstract Article PDF–1.0M

Select item 33726899.

CRISPR immunity relies on the consecutive binding and degradation of negatively supercoiled invader DNA by Cascade and Cas3

Edze R. Westra, Paul B. G. van Erp, Tim Künne, Shi Pey Wong, Raymond H. J. Staals, Christel L. C. Seegers, Sander Bollen, Matthijs M. Jore, Ekaterina Semenova, Konstantin Severinov, Willem M. de Vos, Remus T. Dame, Renko de Vries, Stan J. J. Brouns, John van der Oost

Mol Cell. Author manuscript; available in PMC 2013 Jun 8.

Published in final edited form as: Mol Cell. 2012 Jun 8; 46(5): 595–605. Published online 2012 Apr 19. doi: 10.1016/j.molcel.2012.03.018

PMCID:: PMC3372689

Abstract Article PDF–4.0M

Select item 168148110.

Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110

Koji Hayashi, Naoki Morooka, Yoshihiro Yamamoto, Katsutoshi Fujita, Katsumi Isono, Sunju Choi, Eiichi Ohtsubo, Tomoya Baba, Barry L Wanner, Hirotada Mori, Takashi Horiuchi

Mol Syst Biol. 2006; 2: 2006.0007. Published online 2006 Feb 21. doi: 10.1038/msb4100049

PMCID:: PMC1681481

Abstract Article PDF–141K

Select item 132520011.

Escherichia coli K-12: a cooperatively developed annotation snapshot—2005

Monica Riley, Takashi Abe, Martha B. Arnaud, Mary K.B. Berlyn, Frederick R. Blattner, Roy R. Chaudhuri, Jeremy D. Glasner, Takashi Horiuchi, Ingrid M. Keseler, Takehide Kosuge, Hirotada Mori, Nicole T. Perna, Guy Plunkett, III, Kenneth E. Rudd, Margrethe H. Serres, Gavin H. Thomas, Nicholas R. Thomson, David Wishart, Barry L. Wanner

Nucleic Acids Res. 2006; 34(1): 1–9. Published online 2006 Jan 5. doi: 10.1093/nar/gkj405

PMCID:: PMC1325200

Abstract Article PDF–204K

Select item 30852812.

Intrinsic and extrinsic approaches for detecting genes in a bacterial genome.

M Borodovsky, K E Rudd, E V Koonin

Nucleic Acids Res. 1994 Nov 11; 22(22): 4756–4767. doi: 10.1093/nar/22.22.4756

PMCID:: PMC308528

Summary Page Browse PDF–2.5M

Select item 5689613.

A functional update of the Escherichia coli K-12 genome

Margrethe H Serres, Shuba Gopal, Laila A Nahum, Ping Liang, Terry Gaasterland, Monica Riley

Genome Biol. 2001; 2(9): research0035.1–research0035.7. Published online 2001 Aug 20. doi: 10.1186/gb-2001-2-9-research0035

PMCID:: PMC56896

Abstract Article PDF–87K

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