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Select item 96389381.

Structural basis of three different transcription activation strategies adopted by a single regulator SoxS

Jing Shi, Lu Wang, Aijia Wen, Fulin Wang, Yuqiong Zhang, Libing Yu, Fangfang Li, Yuanling Jin, Zhenzhen Feng, Jiacong Li, Yujiao Yang, Fei Gao, Yu Zhang, Yu Feng, Shuang Wang, Wei Zhao, Wei Lin

Nucleic Acids Res. 2022 Oct 28; 50(19): 11359–11373. Published online 2022 Oct 16. doi: 10.1093/nar/gkac898

PMCID:: PMC9638938

Abstract Article PDF–5.5M

Select item 41238552.

The binary protein-protein interaction landscape of Escherichia coli

Seesandra V. Rajagopala, Patricia Sikorski, Ashwani Kumar, Roberto Mosca, James Vlasblom, Roland Arnold, Jonathan Franca-Koh, Suman B. Pakala, Sadhna Phanse, Arnaud Ceol, Roman Häuser, Gabriella Siszler, Stefan Wuchty, Andrew Emili, Mohan Babu, Patrick Aloy, Rembert Pieper, Peter Uetz

Nat Biotechnol. Author manuscript; available in PMC 2014 Sep 1.

Published in final edited form as: Nat Biotechnol. 2014 Mar; 32(3): 285–290. Published online 2014 Feb 23. doi: 10.1038/nbt.2831

PMCID:: PMC4123855

Abstract Article PDF–1.1M

Select item 38112613.

Superoxide-Mediated Protection of Escherichia coli from Antimicrobials

Michael Mosel, Liping Li, Karl Drlica, Xilin Zhao

Antimicrob Agents Chemother. 2013 Nov; 57(11): 5755–5759. doi: 10.1128/AAC.00754-13

PMCID:: PMC3811261

Abstract Article PDF–1011K

Select item 32948184.

SoxS Increases the Expression of the Zinc Uptake System ZnuACB in an Escherichia coli Murine Pyelonephritis Model

Douglas M. Warner, Stuart B. Levy

J Bacteriol. 2012 Mar; 194(5): 1177–1185. doi: 10.1128/JB.05451-11

PMCID:: PMC3294818

Abstract Article PDF–938K

Select item 30701535.

Genetic Evidence for a Novel Interaction Between Transcriptional Activator SoxS and Region 4 of the σ⁷⁰ Subunit of RNA Polymerase at Class II SoxS-dependent Promoters in Escherichia coli

M. Ammar Zafar, Neus Sanchez-Alberola, Richard E. Wolf, Jr.

J Mol Biol. Author manuscript; available in PMC 2012 Apr 1.

Published in final edited form as: J Mol Biol. 2011 Apr 1; 407(3): 333–353. Published online 2010 Dec 31. doi: 10.1016/j.jmb.2010.12.037

PMCID:: PMC3070153

Abstract Article PDF–1.3M

Select item 29178076.

Protein-Protein Interactions Between σ⁷⁰ Region 4 of RNA Polymerase and Escherichia coli SoxS, a Transcription Activator that Functions by the Pre-recruitment Mechanism: Evidence for “Off-DNA” and “On-DNA” Interactions

M. Ammar Zafar, Ishita M. Shah, Richard E. Wolf, Jr.

J Mol Biol. Author manuscript; available in PMC 2011 Aug 6.

Published in final edited form as: J Mol Biol. 2010 Aug 6; 401(1): 13–32. Published online 2010 Jun 2. doi: 10.1016/j.jmb.2010.05.052

PMCID:: PMC2917807

Abstract Article PDF–1.2M

Select item 28900907.

Different effects of transcriptional regulators MarA, SoxS and Rob on susceptibility of Escherichia coli to cationic antimicrobial peptides (CAMPs): Rob-dependent CAMP induction of the marRAB operon

Douglas M. Warner, Stuart B. Levy

Microbiology (Reading) 2010 Feb; 156(Pt 2): 570–578. doi: 10.1099/mic.0.033415-0

PMCID:: PMC2890090

Abstract Article PDF–169K

Select item 27280428.

Two functions of the C-terminal domain of Escherichia coli Rob: mediating “sequestration-dispersal” as a novel off-on switch for regulating Rob’s activity as a transcription activator and preventing degradation of Rob by Lon protease

Kevin L. Griffith, M. Megan Fitzpatrick, Edward F. Keen, III, Richard E. Wolf, Jr.

J Mol Biol. Author manuscript; available in PMC 2010 May 8.

Published in final edited form as: J Mol Biol. 2009 May 8; 388(3): 415–430. Published online 2009 Mar 14. doi: 10.1016/j.jmb.2009.03.023

PMCID:: PMC2728042

Abstract Article PDF–1000K

Select item 27256009.

An Excretory Function for the Escherichia coli Outer Membrane Pore TolC: Upregulation of marA and soxS Transcription and Rob Activity Due to Metabolites Accumulated in tolC Mutants

Judah L. Rosner, Robert G. Martin

J Bacteriol. 2009 Aug; 191(16): 5283–5292. Published online 2009 Jun 5. doi: 10.1128/JB.00507-09

PMCID:: PMC2725600

Abstract Article PDF–470K

Select item 269849210.

SoxRS-Mediated Lipopolysaccharide Modification Enhances Resistance against Multiple Drugs in Escherichia coli

Joon-Hee Lee, Kang-Lok Lee, Won-Sik Yeo, Su-Jin Park, Jung-Hye Roe

J Bacteriol. 2009 Jul; 191(13): 4441–4450. Published online 2009 Apr 17. doi: 10.1128/JB.01474-08

PMCID:: PMC2698492

Abstract Article PDF–1.1M

Select item 261491211.

Activation of the E. coli marA/soxS/rob regulon in response to transcriptional activator concentration

Robert G. Martin, Emily S. Bartlett, Judah L. Rosner, Michael E. Wall

J Mol Biol. Author manuscript; available in PMC 2009 Jan 7.

Published in final edited form as: J Mol Biol. 2008 Jul 4; 380(2): 278–284. Published online 2008 May 13. doi: 10.1016/j.jmb.2008.05.015

PMCID:: PMC2614912

Abstract Article PDF–293K

Select item 259778812.

Repression of small toxic protein synthesis by the Sib and OhsC small RNAs

Elizabeth M. Fozo, Mitsuoki Kawano, Fanette Fontaine, Yusuf Kaya, Kathy S. Mendieta, Kristi L. Jones, Alejandro Ocampo, Kenneth E. Rudd, Gisela Storz

Mol Microbiol. Author manuscript; available in PMC 2008 Dec 9.

Published in final edited form as: Mol Microbiol. 2008 Dec; 70(5): 1076–1093. Published online 2008 Aug 14. doi: 10.1111/j.1365-2958.2008.06394.x

Correction in:: volume 70 on page 1305

PMCID:: PMC2597788

Abstract Article PDF–2.8M

Select item 257495613.

Transcriptional activation by MarA, SoxS and Rob of two tolC promoters using one binding site: a complex promoter configuration for tolC in Escherichia coli

Aixia Zhang, Judah L. Rosner, Robert G. Martin

Mol Microbiol. Author manuscript; available in PMC 2009 Sep 1.

Published in final edited form as: Mol Microbiol. 2008 Sep; 69(6): 1450–1455. Published online 2008 Jul 31. doi: 10.1111/j.1365-2958.2008.06371.x

PMCID:: PMC2574956

Abstract Article PDF–495K

Select item 239501014.

Genome-Wide Transcriptional Responses of Escherichia coli K-12 to Continuous Osmotic and Heat Stresses

Thusitha S. Gunasekera, Laszlo N. Csonka, Oleg Paliy

J Bacteriol. 2008 May; 190(10): 3712–3720. Published online 2008 Mar 21. doi: 10.1128/JB.01990-07

PMCID:: PMC2395010

Abstract Article PDF–360K

Select item 206496015.

Rapid Changes in Gene Expression Dynamics in Response to Superoxide Reveal SoxRS-Dependent and Independent Transcriptional Networks

Jeffrey L. Blanchard, Wei-Yun Wholey, Erin M. Conlon, Pablo J. Pomposiello

PLoS One. 2007; 2(11): e1186. Published online 2007 Nov 14. doi: 10.1371/journal.pone.0001186

Correction in:: PLoS One. 2012; 7(11): 10.1371/annotation/5cba04eb-5172-43a7-ad92-10efcd3858c9.

PMCID:: PMC2064960

Abstract Article PDF–673K

Select item 183852316.

Antibiotic Stress, Genetic Response and Altered Permeability of E. coli

Miguel Viveiros, Myrielle Dupont, Liliana Rodrigues, Isabel Couto, Anne Davin-Regli, Marta Martins, Jean-Marie Pagès, Leonard Amaral

PLoS One. 2007; 2(4): e365. Published online 2007 Apr 11. doi: 10.1371/journal.pone.0000365

PMCID:: PMC1838523

Abstract Article PDF–290K

Select item 178407017.

Bacterial Toxicity of Potassium Tellurite: Unveiling an Ancient Enigma

José M. Pérez, Iván L. Calderón, Felipe A. Arenas, Derie E. Fuentes, Gonzalo A. Pradenas, Eugenia L. Fuentes, Juan M. Sandoval, Miguel E. Castro, Alex O. Elías, Claudio C. Vásquez

PLoS One. 2007; 2(2): e211. Published online 2007 Feb 14. doi: 10.1371/journal.pone.0000211

PMCID:: PMC1784070

Abstract Article PDF–207K

Select item 168148118.

Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110

Koji Hayashi, Naoki Morooka, Yoshihiro Yamamoto, Katsutoshi Fujita, Katsumi Isono, Sunju Choi, Eiichi Ohtsubo, Tomoya Baba, Barry L Wanner, Hirotada Mori, Takashi Horiuchi

Mol Syst Biol. 2006; 2: 2006.0007. Published online 2006 Feb 21. doi: 10.1038/msb4100049

PMCID:: PMC1681481

Abstract Article PDF–141K

Select item 142643919.

Medium Plays a Role in Determining Expression of acrB, marA, and soxS in Escherichia coli

Andrew M. Bailey, Mark A. Webber, Laura J. V. Piddock

Antimicrob Agents Chemother. 2006 Mar; 50(3): 1071–1074. doi: 10.1128/AAC.50.3.1071-1074.2006

PMCID:: PMC1426439

Abstract Article PDF–69K

Select item 132520020.

Escherichia coli K-12: a cooperatively developed annotation snapshot—2005

Monica Riley, Takashi Abe, Martha B. Arnaud, Mary K.B. Berlyn, Frederick R. Blattner, Roy R. Chaudhuri, Jeremy D. Glasner, Takashi Horiuchi, Ingrid M. Keseler, Takehide Kosuge, Hirotada Mori, Nicole T. Perna, Guy Plunkett, III, Kenneth E. Rudd, Margrethe H. Serres, Gavin H. Thomas, Nicholas R. Thomson, David Wishart, Barry L. Wanner

Nucleic Acids Res. 2006; 34(1): 1–9. Published online 2006 Jan 5. doi: 10.1093/nar/gkj405