PMC Links for GEO Profiles (Select 35605155) - PMC

Select item 65943921.

Secret Weapon

Ryland F. Young, III

Science. Author manuscript; available in PMC 2019 Jun 26.

Published in final edited form as: Science. 2008 Aug 15; 321(5891): 922–923. doi: 10.1126/science.1162910

PMCID:: PMC6594392

Article PDF–250K

Select item 63865902.

A functional mini-integrase in a two-protein type V-C CRISPR system

Addison V. Wright, Joy Y. Wang, David Burstein, Lucas B. Harrington, David Paez-Espino, Nikos C. Kyrpides, Anthony T. Iavarone, Jillian F. Banfield, Jennifer A. Doudna

Mol Cell. Author manuscript; available in PMC 2020 Feb 21.

Published in final edited form as: Mol Cell. 2019 Feb 21; 73(4): 727–737.e3. Published online 2019 Jan 29. doi: 10.1016/j.molcel.2018.12.015

PMCID:: PMC6386590

Article PDF–1.8M

Select item 58982353.

Small CRISPR RNAs Guide Antiviral Defense in Prokaryotes

Stan J. J. Brouns, Matthijs M. Jore, Magnus Lundgren, Edze R. Westra, Rik J. H. Slijkhuis, Ambrosius P. L. Snijders, Mark J. Dickman, Kira S. Makarova, Eugene V. Koonin, John van der Oost

Science. Author manuscript; available in PMC 2018 Apr 13.

Published in final edited form as: Science. 2008 Aug 15; 321(5891): 960–964. doi: 10.1126/science.1159689

PMCID:: PMC5898235

Article PDF–503K

Select item 57483854.

Structures of the CRISPR genome integration complex

Addison V. Wright, Jun-Jie Liu, Gavin J. Knott, Kevin W. Doxzen, Eva Nogales, Jennifer A. Doudna

Science. Author manuscript; available in PMC 2018 Mar 15.

Published in final edited form as: Science. 2017 Sep 15; 357(6356): 1113–1118. Published online 2017 Jul 20. doi: 10.1126/science.aao0679

PMCID:: PMC5748385

Article PDF–1.7M

Select item 53895265.

DNA binding specificities of Escherichia coli Cas1–Cas2 integrase drive its recruitment at the CRISPR locus

Clara Moch, Michel Fromant, Sylvain Blanquet, Pierre Plateau

Nucleic Acids Res. 2017 Mar 17; 45(5): 2714–2723. Published online 2016 Dec 29. doi: 10.1093/nar/gkw1309

PMCID:: PMC5389526

Article PDF–3.3M

Select item 53895166.

Spacer-length DNA intermediates are associated with Cas1 in cells undergoing primed CRISPR adaptation

Olga Musharova, Evgeny Klimuk, Kirill A. Datsenko, Anastasia Metlitskaya, Maria Logacheva, Ekaterina Semenova, Konstantin Severinov, Ekaterina Savitskaya

Nucleic Acids Res. 2017 Apr 7; 45(6): 3297–3307. Published online 2017 Feb 15. doi: 10.1093/nar/gkx097

PMCID:: PMC5389516

Article PDF–1.3M

Select item 52244867.

Asymmetric positioning of Cas1–2 complex and Integration Host Factor induced DNA bending guide the unidirectional homing of protospacer in CRISPR-Cas type I-E system

K.N.R. Yoganand, R. Sivathanu, Siddharth Nimkar, B. Anand

Nucleic Acids Res. 2017 Jan 9; 45(1): 367–381. Published online 2016 Nov 28. doi: 10.1093/nar/gkw1151

PMCID:: PMC5224486

Article PDF–5.1M

Select item 46369418.

Surveillance and processing of foreign DNA by the Escherichia coli CRISPR-Cas system

Sy Redding, Samuel H. Sternberg, Myles Marshall, Bryan Gibb, Prashant Bhat, Chantal K. Guegler, Blake Wiedenheft, Jennifer A. Doudna, Eric C. Greene

Cell. Author manuscript; available in PMC 2016 Nov 5.

Published in final edited form as: Cell. 2015 Nov 5; 163(4): 854–865. doi: 10.1016/j.cell.2015.10.003

PMCID:: PMC4636941

Article PDF–2.6M

Select item 45740269.

Intrinsic sequence specificity of the Cas1 integrase directs new spacer acquisition

Clare Rollie, Stefanie Schneider, Anna Sophie Brinkmann, Edward L Bolt, Malcolm F White

eLife. 2015; 4: e08716. Published online 2015 Aug 18. doi: 10.7554/eLife.08716

PMCID:: PMC4574026

Article PDF–8.4M

Select item 412385510.

The binary protein-protein interaction landscape of Escherichia coli

Seesandra V. Rajagopala, Patricia Sikorski, Ashwani Kumar, Roberto Mosca, James Vlasblom, Roland Arnold, Jonathan Franca-Koh, Suman B. Pakala, Sadhna Phanse, Arnaud Ceol, Roman Häuser, Gabriella Siszler, Stefan Wuchty, Andrew Emili, Mohan Babu, Patrick Aloy, Rembert Pieper, Peter Uetz

Nat Biotechnol. Author manuscript; available in PMC 2014 Sep 1.

Published in final edited form as: Nat Biotechnol. 2014 Mar; 32(3): 285–290. Published online 2014 Feb 23. doi: 10.1038/nbt.2831

PMCID:: PMC4123855

Article PDF–1.1M

Select item 407594211.

Cas1–Cas2 complex formation mediates spacer acquisition during CRISPR–Cas adaptive immunity

James K. Nuñez, Philip J. Kranzusch, Jonas Noeske, Addison V. Wright, Christopher W. Davies, Jennifer A. Doudna

Nat Struct Mol Biol. Author manuscript; available in PMC 2014 Dec 1.

Published in final edited form as: Nat Struct Mol Biol. 2014 Jun; 21(6): 528–534. Published online 2014 May 4. doi: 10.1038/nsmb.2820

PMCID:: PMC4075942

Article PDF–1.1M

Select item 307154812.

A dual function of the CRISPR-Cas system in bacterial antivirus immunity and DNA repair

Mohan Babu, Natalia Beloglazova, Robert Flick, Chris Graham, Tatiana Skarina, Boguslaw Nocek, Alla Gagarinova, Oxana Pogoutse, Greg Brown, Andrew Binkowski, Sadhna Phanse, Andrzej Joachimiak, Eugene V. Koonin, Alexei Savchenko, Andrew Emili, Jack Greenblatt, Aled M. Edwards, Alexander F. Yakunin

Mol Microbiol. Author manuscript; available in PMC 2012 Jan 1.

Published in final edited form as: Mol Microbiol. 2011 Jan; 79(2): 484–502. Published online 2010 Dec 7. doi: 10.1111/j.1365-2958.2010.07465.x

PMCID:: PMC3071548

Article PDF–2.6M

Select item 271143213.

Invasive DNA, Chopped and in the CRISPR

Luciano A. Marraffini, Erik J. Sontheimer

Structure. Author manuscript; available in PMC 2009 Jul 16.

Published in final edited form as: Structure. 2009 Jun 10; 17(6): 786–788. doi: 10.1016/j.str.2009.05.002

PMCID:: PMC2711432

Article PDF–232K

Select item 168148114.

Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110

Koji Hayashi, Naoki Morooka, Yoshihiro Yamamoto, Katsutoshi Fujita, Katsumi Isono, Sunju Choi, Eiichi Ohtsubo, Tomoya Baba, Barry L Wanner, Hirotada Mori, Takashi Horiuchi

Mol Syst Biol. 2006; 2: 2006.0007. Published online 2006 Feb 21. doi: 10.1038/msb4100049

PMCID:: PMC1681481

Article PDF–141K

Select item 132520015.

Escherichia coli K-12: a cooperatively developed annotation snapshot—2005

Monica Riley, Takashi Abe, Martha B. Arnaud, Mary K.B. Berlyn, Frederick R. Blattner, Roy R. Chaudhuri, Jeremy D. Glasner, Takashi Horiuchi, Ingrid M. Keseler, Takehide Kosuge, Hirotada Mori, Nicole T. Perna, Guy Plunkett, III, Kenneth E. Rudd, Margrethe H. Serres, Gavin H. Thomas, Nicholas R. Thomson, David Wishart, Barry L. Wanner

Nucleic Acids Res. 2006; 34(1): 1–9. Published online 2006 Jan 5. doi: 10.1093/nar/gkj405

PMCID:: PMC1325200

Article PDF–204K

Select item 5689616.

A functional update of the Escherichia coli K-12 genome

Margrethe H Serres, Shuba Gopal, Laila A Nahum, Ping Liang, Terry Gaasterland, Monica Riley

Genome Biol. 2001; 2(9): research0035.1–research0035.7. Published online 2001 Aug 20. doi: 10.1186/gb-2001-2-9-research0035

PMCID:: PMC56896

Article PDF–87K

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