PMC Links for GEO Profiles (Select 35607889) - PMC

Seesandra V. Rajagopala, Patricia Sikorski, Ashwani Kumar, Roberto Mosca, James Vlasblom, Roland Arnold, Jonathan Franca-Koh, Suman B. Pakala, Sadhna Phanse, Arnaud Ceol, Roman Häuser, Gabriella Siszler, Stefan Wuchty, Andrew Emili, Mohan Babu, Patrick Aloy, Rembert Pieper, Peter Uetz

Nat Biotechnol. Author manuscript; available in PMC 2014 Sep 1.

Published in final edited form as: Nat Biotechnol. 2014 Mar; 32(3): 285–290. Published online 2014 Feb 23. doi: 10.1038/nbt.2831

PMCID:: PMC4123855

Abstract Article PDF–1.1M

Select item 31475364.

Recognition of DNA by the Helix-Turn-Helix Global Regulatory Protein Lrp Is Modulated by the Amino Terminus

Benjamin R. Hart, Pankaj K. Mishra, Robert E. Lintner, Jennifer M. Hinerman, Andrew B. Herr, Robert M. Blumenthal

J Bacteriol. 2011 Aug; 193(15): 3794–3803. doi: 10.1128/JB.00191-11

PMCID:: PMC3147536

Abstract Article PDF–2.4M

Select item 31331635.

Identification of ArgP and Lrp as Transcriptional Regulators of lysP, the Gene Encoding the Specific Lysine Permease of Escherichia coli

Jimena Ruiz, Ina Haneburger, Kirsten Jung

J Bacteriol. 2011 May; 193(10): 2536–2548. doi: 10.1128/JB.00815-10

PMCID:: PMC3133163

Abstract Article PDF–1.5M

Select item 26320106.

The Leucine-Responsive Regulatory Protein, Lrp, Modulates Microcin J25 Intrinsic Resistance in Escherichia coli by Regulating Expression of the YojI Microcin Exporter

Sergio B. Socías, Paula A. Vincent, Raúl A. Salomón

J Bacteriol. 2009 Feb; 191(4): 1343–1348. Published online 2008 Dec 12. doi: 10.1128/JB.01074-08

PMCID:: PMC2632010

Abstract Article PDF–613K

Select item 26319997.

Leucine-Responsive Regulatory Protein (Lrp) Acts as a Virulence Repressor in Salmonella enterica Serovar Typhimurium

Chang-Ho Baek, Shifeng Wang, Kenneth L. Roland, Roy Curtiss, III

J Bacteriol. 2009 Feb; 191(4): 1278–1292. Published online 2008 Dec 12. doi: 10.1128/JB.01142-08

PMCID:: PMC2631999

Abstract Article PDF–1.2M

Select item 26147838.

Genome-scale reconstruction of the Lrp regulatory network in Escherichia coli

Byung-Kwan Cho, Christian L. Barrett, Eric M. Knight, Young Seoub Park, Bernhard Ø. Palsson

Proc Natl Acad Sci U S A. 2008 Dec 9; 105(49): 19462–19467. Published online 2008 Dec 3. doi: 10.1073/pnas.0807227105

PMCID:: PMC2614783

Abstract Article PDF–1.9M

Select item 23747959.

Limited functional conservation of a global regulator among related bacterial genera: Lrp in Escherichia, Proteus and Vibrio

Robert E Lintner, Pankaj K Mishra, Poonam Srivastava, Betsy M Martinez-Vaz, Arkady B Khodursky, Robert M Blumenthal

BMC Microbiol. 2008; 8: 60. Published online 2008 Apr 11. doi: 10.1186/1471-2180-8-60

PMCID:: PMC2374795

Abstract Article PDF–2.7M

Select item 229217710.

Protein abundance profiling of the Escherichia coli cytosol

Yasushi Ishihama, Thorsten Schmidt, Juri Rappsilber, Matthias Mann, F Ulrich Hartl, Michael J Kerner, Dmitrij Frishman

BMC Genomics. 2008; 9: 102. Published online 2008 Feb 27. doi: 10.1186/1471-2164-9-102

PMCID:: PMC2292177

Abstract Article PDF–1.0M

Select item 193350211.

Structure of the Escherichia coli leucine-responsive regulatory protein Lrp reveals a novel octameric assembly

Stephanie de los Rios, John J Perona

J Mol Biol. Author manuscript; available in PMC 2007 Jul 26.

Published in final edited form as: J Mol Biol. 2007 Mar 9; 366(5): 1589–1602. Published online 2006 Dec 19. doi: 10.1016/j.jmb.2006.12.032

PMCID:: PMC1933502

Abstract Article PDF–1.9M

Select item 185722512.

Metabolic engineering of Escherichia coli for the production of l-valine based on transcriptome analysis and in silico gene knockout simulation

Jin Hwan Park, Kwang Ho Lee, Tae Yong Kim, Sang Yup Lee

Proc Natl Acad Sci U S A. 2007 May 8; 104(19): 7797–7802. Published online 2007 Apr 26. doi: 10.1073/pnas.0702609104

PMCID:: PMC1857225

Abstract Article PDF–793K

Select item 178409513.

Integration of regulatory signals through involvement of multiple global regulators: control of the Escherichia coli gltBDF operon by Lrp, IHF, Crp, and ArgR

Ligi Paul, Pankaj K Mishra, Robert M Blumenthal, Rowena G Matthews

BMC Microbiol. 2007; 7: 2. Published online 2007 Jan 18. doi: 10.1186/1471-2180-7-2

PMCID:: PMC1784095

Abstract Article PDF–2.1M

Select item 168148114.

Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110

Koji Hayashi, Naoki Morooka, Yoshihiro Yamamoto, Katsutoshi Fujita, Katsumi Isono, Sunju Choi, Eiichi Ohtsubo, Tomoya Baba, Barry L Wanner, Hirotada Mori, Takashi Horiuchi

Mol Syst Biol. 2006; 2: 2006.0007. Published online 2006 Feb 21. doi: 10.1038/msb4100049

PMCID:: PMC1681481

Abstract Article PDF–141K

Select item 154004115.

DNA Supercoiling and the Lrp Protein Determine the Directionality of fim Switch DNA Inversion in Escherichia coli K-12

Arlene Kelly, Colin Conway, Tadhg Ó Cróinín, Stephen G. J. Smith, Charles J. Dorman

J Bacteriol. 2006 Aug; 188(15): 5356–5363. doi: 10.1128/JB.00344-06

PMCID:: PMC1540041

Abstract Article PDF–342K

Select item 145705216.

Large-scale identification of protein–protein interaction of Escherichia coli K-12

Mohammad Arifuzzaman, Maki Maeda, Aya Itoh, Kensaku Nishikata, Chiharu Takita, Rintaro Saito, Takeshi Ara, Kenji Nakahigashi, Hsuan-Cheng Huang, Aki Hirai, Kohei Tsuzuki, Seira Nakamura, Mohammad Altaf-Ul-Amin, Taku Oshima, Tomoya Baba, Natsuko Yamamoto, Tomoyo Kawamura, Tomoko Ioka-Nakamichi, Masanari Kitagawa, Masaru Tomita, Shigehiko Kanaya, Chieko Wada, Hirotada Mori

Genome Res. 2006 May; 16(5): 686–691. doi: 10.1101/gr.4527806

PMCID:: PMC1457052

Abstract Article PDF–536K

Select item 140150717.

Structural insight into gene transcriptional regulation and effector binding by the Lrp/AsnC family

Paul Thaw, Svetlana E. Sedelnikova, Tatyana Muranova, Sebastian Wiese, Sylvia Ayora, Juan C. Alonso, Arie B. Brinkman, Jasper Akerboom, John van der Oost, John B. Rafferty

Nucleic Acids Res. 2006; 34(5): 1439–1449. Published online 2006 Mar 9. doi: 10.1093/nar/gkl009

Correction in:: Nucleic Acids Res. 2006; 34(6): 1944.

PMCID:: PMC1401507

Abstract Article PDF–1.3M

Select item 132520018.

Escherichia coli K-12: a cooperatively developed annotation snapshot—2005

Monica Riley, Takashi Abe, Martha B. Arnaud, Mary K.B. Berlyn, Frederick R. Blattner, Roy R. Chaudhuri, Jeremy D. Glasner, Takashi Horiuchi, Ingrid M. Keseler, Takehide Kosuge, Hirotada Mori, Nicole T. Perna, Guy Plunkett, III, Kenneth E. Rudd, Margrethe H. Serres, Gavin H. Thomas, Nicholas R. Thomson, David Wishart, Barry L. Wanner

Nucleic Acids Res. 2006; 34(1): 1–9. Published online 2006 Jan 5. doi: 10.1093/nar/gkj405