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Items: 1 to 20 of 37

1.
Three Members of Polyamine Modulon under Oxidative Stress Conditions: Two Transcription Factors (SoxR and EmrR) and a Glutathione Synthetic Enzyme (GshA)
Akihiko Sakamoto, Yusuke Terui, Taketo Yoshida, Taku Yamamoto, Hideyuki Suzuki, Kaneyoshi Yamamoto, Akira Ishihama, Kazuei Igarashi, Keiko Kashiwagi
PLoS One. 2015; 10(4): e0124883. Published online 2015 Apr 21. doi: 10.1371/journal.pone.0124883
PMCID:
PMC4405209
AbstractArticlePDF–796K
2.
The binary protein-protein interaction landscape of Escherichia coli
Seesandra V. Rajagopala, Patricia Sikorski, Ashwani Kumar, Roberto Mosca, James Vlasblom, Roland Arnold, Jonathan Franca-Koh, Suman B. Pakala, Sadhna Phanse, Arnaud Ceol, Roman Häuser, Gabriella Siszler, Stefan Wuchty, Andrew Emili, Mohan Babu, Patrick Aloy, Rembert Pieper, Peter Uetz
Nat Biotechnol. Author manuscript; available in PMC 2014 Sep 1.
Published in final edited form as: Nat Biotechnol. 2014 Mar; 32(3): 285–290. Published online 2014 Feb 23. doi: 10.1038/nbt.2831
PMCID:
PMC4123855
AbstractArticlePDF–1.1M
3.
Comparative study of SoxR activation by redox-active compounds
Atul K. Singh, Jung-Ho Shin, Kang-Lok Lee, James A. Imlay, Jung-Hye Roe
Mol Microbiol. Author manuscript; available in PMC 2014 Dec 1.
Published in final edited form as: Mol Microbiol. 2013 Dec; 90(5): 10.1111/mmi.12410. Published online 2013 Oct 17. doi: 10.1111/mmi.12410
PMCID:
PMC3872530
AbstractArticlePDF–3.8M
4.
A DNA-Based Nanomechanical Device Used to Characterize the Distortion of DNA by Apo-SoxR Protein
Chunhua Liu, Eunsuk Kim, Bruce Demple, Nadrian C. Seeman
Biochemistry. Author manuscript; available in PMC 2013 Feb 7.
Published in final edited form as: Biochemistry. 2012 Feb 7; 51(5): 937–943. Published online 2012 Jan 26. doi: 10.1021/bi201196s
PMCID:
PMC3277648
AbstractArticlePDF–1.4M
5.
Redox-Active Antibiotics Control Gene Expression and Community Behavior in Divergent Bacteria
Lars E. P. Dietrich, Tracy K. Teal, Alexa Price-Whelan, Dianne K. Newman
Science. Author manuscript; available in PMC 2009 Sep 17.
Published in final edited form as: Science. 2008 Aug 29; 321(5893): 1203–1206. doi: 10.1126/science.1160619
PMCID:
PMC2745639
AbstractArticlePDF–1.7M
6.
DNA-mediated redox signaling for transcriptional activation of SoxR
Paul E. Lee, Bruce Demple, Jacqueline K. Barton
Proc Natl Acad Sci U S A. 2009 Aug 11; 106(32): 13164–13168. Published online 2009 Jul 27. doi: 10.1073/pnas.0906429106
PMCID:
PMC2726364
AbstractArticlePDF–1.1M
7.
SoxRS-Mediated Lipopolysaccharide Modification Enhances Resistance against Multiple Drugs in Escherichia coli
Joon-Hee Lee, Kang-Lok Lee, Won-Sik Yeo, Su-Jin Park, Jung-Hye Roe
J Bacteriol. 2009 Jul; 191(13): 4441–4450. Published online 2009 Apr 17. doi: 10.1128/JB.01474-08
PMCID:
PMC2698492
AbstractArticlePDF–1.1M
8.
Genome-Wide Transcriptional Responses of Escherichia coli K-12 to Continuous Osmotic and Heat Stresses
Thusitha S. Gunasekera, Laszlo N. Csonka, Oleg Paliy
J Bacteriol. 2008 May; 190(10): 3712–3720. Published online 2008 Mar 21. doi: 10.1128/JB.01990-07
PMCID:
PMC2395010
AbstractArticlePDF–360K
9.
DNA binding shifts the redox potential of the transcription factor SoxR
Alon A. Gorodetsky, Lars E. P. Dietrich, Paul E. Lee, Bruce Demple, Dianne K. Newman, Jacqueline K. Barton
Proc Natl Acad Sci U S A. 2008 Mar 11; 105(10): 3684–3689. Published online 2008 Mar 3. doi: 10.1073/pnas.0800093105
PMCID:
PMC2268809
AbstractArticlePDF–577K
10.
Rapid Changes in Gene Expression Dynamics in Response to Superoxide Reveal SoxRS-Dependent and Independent Transcriptional Networks
Jeffrey L. Blanchard, Wei-Yun Wholey, Erin M. Conlon, Pablo J. Pomposiello
PLoS One. 2007; 2(11): e1186. Published online 2007 Nov 14. doi: 10.1371/journal.pone.0001186
Correction in:
PLoS One. 2012; 7(11): 10.1371/annotation/5cba04eb-5172-43a7-ad92-10efcd3858c9.
PMCID:
PMC2064960
AbstractArticlePDF–673K
11.
Nitric Oxide in Chemostat-Cultured Escherichia coli Is Sensed by Fnr and Other Global Regulators: Unaltered Methionine Biosynthesis Indicates Lack of S Nitrosation
Steven T. Pullan, Mark D. Gidley, Richard A. Jones, Jason Barrett, Tania M. Stevanin, Robert C. Read, Jeffrey Green, Robert K. Poole
J Bacteriol. 2007 Mar; 189(5): 1845–1855. Published online 2006 Dec 22. doi: 10.1128/JB.01354-06
PMCID:
PMC1855760
AbstractArticlePDF–173K
12.
Induction of a Global Stress Response during the First Step of Escherichia coli Plate Growth
Caroline Cuny, Maïalène Lesbats, Sam Dukan
Appl Environ Microbiol. 2007 Feb; 73(3): 885–889. Published online 2006 Dec 1. doi: 10.1128/AEM.01874-06
PMCID:
PMC1800750
AbstractArticlePDF–197K
13.
Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110
Koji Hayashi, Naoki Morooka, Yoshihiro Yamamoto, Katsutoshi Fujita, Katsumi Isono, Sunju Choi, Eiichi Ohtsubo, Tomoya Baba, Barry L Wanner, Hirotada Mori, Takashi Horiuchi
Mol Syst Biol. 2006; 2: 2006.0007. Published online 2006 Feb 21. doi: 10.1038/msb4100049
PMCID:
PMC1681481
AbstractArticlePDF–141K
14.
Stress and Survival of Aging Escherichia coli rpoS Colonies
Claude Saint-Ruf, François Taddei, Ivan Matic
Genetics. 2004 Sep; 168(1): 541–546. doi: 10.1534/genetics.104.028704
PMCID:
PMC1448099
AbstractArticlePDF–137K
15.
Escherichia coli K-12: a cooperatively developed annotation snapshot—2005
Monica Riley, Takashi Abe, Martha B. Arnaud, Mary K.B. Berlyn, Frederick R. Blattner, Roy R. Chaudhuri, Jeremy D. Glasner, Takashi Horiuchi, Ingrid M. Keseler, Takehide Kosuge, Hirotada Mori, Nicole T. Perna, Guy Plunkett, III, Kenneth E. Rudd, Margrethe H. Serres, Gavin H. Thomas, Nicholas R. Thomson, David Wishart, Barry L. Wanner
Nucleic Acids Res. 2006; 34(1): 1–9. Published online 2006 Jan 5. doi: 10.1093/nar/gkj405
PMCID:
PMC1325200
AbstractArticlePDF–204K
16.
Constitutive soxR Mutations Contribute to Multiple-Antibiotic Resistance in Clinical Escherichia coli Isolates
Anastasia Koutsolioutsou, Samuel Peña-Llopis, Bruce Demple
Antimicrob Agents Chemother. 2005 Jul; 49(7): 2746–2752. doi: 10.1128/AAC.49.7.2746-2752.2005
PMCID:
PMC1168631
AbstractArticlePDF–198K
17.
An iron-sulfur center essential for transcriptional activation by the redox-sensing SoxR protein.
E Hidalgo, B Demple
EMBO J. 1994 Jan 1; 13(1): 138–146. doi: 10.1002/j.1460-2075.1994.tb06243.x
PMCID:
PMC394787
SummaryPage BrowsePDF–2.2M
18.
Molecular characterization of the soxRS genes of Escherichia coli: two genes control a superoxide stress regulon.
C F Amábile-Cuevas, B Demple
Nucleic Acids Res. 1991 Aug 25; 19(16): 4479–4484. doi: 10.1093/nar/19.16.4479
PMCID:
PMC328637
SummaryPage BrowsePDF–1.3M
19.
Analysis of the Escherichia coli genome. IV. DNA sequence of the region from 89.2 to 92.8 minutes.
F R Blattner, V Burland, G Plunkett, 3rd, H J Sofia, D L Daniels
Nucleic Acids Res. 1993 Nov 25; 21(23): 5408–5417. doi: 10.1093/nar/21.23.5408
PMCID:
PMC310579
SummaryPage BrowsePDF–1.8M
20.
Isolation of gene fusions (soi::lacZ) inducible by oxidative stress in Escherichia coli.
T Kogoma, S B Farr, K M Joyce, D O Natvig
Proc Natl Acad Sci U S A. 1988 Jul; 85(13): 4799–4803. doi: 10.1073/pnas.85.13.4799
PMCID:
PMC280523
SummaryPage BrowsePDF–977K

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