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Select item 41238551.

The binary protein-protein interaction landscape of Escherichia coli

Seesandra V. Rajagopala, Patricia Sikorski, Ashwani Kumar, Roberto Mosca, James Vlasblom, Roland Arnold, Jonathan Franca-Koh, Suman B. Pakala, Sadhna Phanse, Arnaud Ceol, Roman Häuser, Gabriella Siszler, Stefan Wuchty, Andrew Emili, Mohan Babu, Patrick Aloy, Rembert Pieper, Peter Uetz

Nat Biotechnol. Author manuscript; available in PMC 2014 Sep 1.

Published in final edited form as: Nat Biotechnol. 2014 Mar; 32(3): 285–290. Published online 2014 Feb 23. doi: 10.1038/nbt.2831

PMCID:: PMC4123855

Abstract Article PDF–1.1M

Select item 36647922.

Proofreading exonuclease on a tether: the complex between the E. coli DNA polymerase III subunits α, ε, θ and β reveals a highly flexible arrangement of the proofreading domain

Kiyoshi Ozawa, Nicholas P. Horan, Andrew Robinson, Hiromasa Yagi, Flynn R. Hill, Slobodan Jergic, Zhi-Qiang Xu, Karin V. Loscha, Nan Li, Moeava Tehei, Aaron J. Oakley, Gottfried Otting, Thomas Huber, Nicholas E. Dixon

Nucleic Acids Res. 2013 May; 41(10): 5354–5367. Published online 2013 Apr 10. doi: 10.1093/nar/gkt162

PMCID:: PMC3664792

Abstract Article PDF–6.3M

Select item 25281903.

The proofreading exonuclease subunit ε of Escherichia coli DNA polymerase III is tethered to the polymerase subunit α via a flexible linker

Kiyoshi Ozawa, Slobodan Jergic, Ah Young Park, Nicholas E. Dixon, Gottfried Otting

Nucleic Acids Res. 2008 Sep; 36(15): 5074–5082. Published online 2008 Jul 28. doi: 10.1093/nar/gkn489

PMCID:: PMC2528190

Abstract Article PDF–1.4M

Select item 22921774.

Protein abundance profiling of the Escherichia coli cytosol

Yasushi Ishihama, Thorsten Schmidt, Juri Rappsilber, Matthias Mann, F Ulrich Hartl, Michael J Kerner, Dmitrij Frishman

BMC Genomics. 2008; 9: 102. Published online 2008 Feb 27. doi: 10.1186/1471-2164-9-102

PMCID:: PMC2292177

Abstract Article PDF–1.0M

Select item 22865935.

Application of electrospray ionization mass spectrometry to study the hydrophobic interaction between the ɛ and θ subunits of DNA polymerase III

Rajesh Gupta, Samir M. Hamdan, Nicholas E. Dixon, Margaret M. Sheil, Jennifer L. Beck

Protein Sci. 2004 Nov; 13(11): 2878–2887. doi: 10.1110/ps.04889604

PMCID:: PMC2286593

Abstract Article PDF–155K

Select item 21446246.

NMR solution structure of the theta subunit of DNA polymerase III from Escherichia coli.

M. A. Keniry, H. A. Berthon, J. Y. Yang, C. S. Miles, N. E. Dixon

Protein Sci. 2000 Apr; 9(4): 721–733. doi: 10.1110/ps.9.4.721

PMCID:: PMC2144624

Summary PDF–2.8M

Select item 20728117.

The bacteriophage P1 hot gene, encoding a homolog of the E. coli DNA polymerase III θ subunit, is expressed during both lysogenic and lytic growth stages

Anna K. Chikova, Roel M. Schaaper

Mutat Res. Author manuscript; available in PMC 2007 Nov 9.

Published in final edited form as: Mutat Res. 2007 Nov 1; 624(1-2): 1–8. Published online 2007 Apr 19. doi: 10.1016/j.mrfmmm.2007.01.014

PMCID:: PMC2072811

Abstract Article PDF–640K

Select item 18767208.

Structure of the Escherichia coli DNA Polymerase III ε-HOT Proofreading Complex

Thomas W. Kirby, Scott Harvey, Eugene F. DeRose, Sergey Chalov, Anna K. Chikova, Fred W. Perrino, Roel M. Schaaper, Robert E. London, Lars C. Pedersen

J Biol Chem. Author manuscript; available in PMC 2007 May 24.

Published in final edited form as: J Biol Chem. 2006 Dec 15; 281(50): 38466–38471. Published online 2006 Sep 13. doi: 10.1074/jbc.M606917200

PMCID:: PMC1876720

Abstract Article PDF–744K

Select item 16814819.

Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110

Koji Hayashi, Naoki Morooka, Yoshihiro Yamamoto, Katsutoshi Fujita, Katsumi Isono, Sunju Choi, Eiichi Ohtsubo, Tomoya Baba, Barry L Wanner, Hirotada Mori, Takashi Horiuchi

Mol Syst Biol. 2006; 2: 2006.0007. Published online 2006 Feb 21. doi: 10.1038/msb4100049

PMCID:: PMC1681481

Abstract Article PDF–141K

Select item 154008110.

Mutator and Antimutator Effects of the Bacteriophage P1 hot Gene Product

Anna K. Chikova, Roel M. Schaaper

J Bacteriol. 2006 Aug; 188(16): 5831–5838. doi: 10.1128/JB.00630-06

PMCID:: PMC1540081

Abstract Article PDF–230K

Select item 148295311.

Structure of the θ Subunit of Escherichia coli DNA Polymerase III in Complex with the ɛ Subunit

Max A. Keniry, Ah Young Park, Elisabeth A. Owen, Samir M. Hamdan, Guido Pintacuda, Gottfried Otting, Nicholas E. Dixon

J Bacteriol. 2006 Jun; 188(12): 4464–4473. doi: 10.1128/JB.01992-05

PMCID:: PMC1482953

Abstract Article PDF–583K

Select item 132520012.

Escherichia coli K-12: a cooperatively developed annotation snapshot—2005

Monica Riley, Takashi Abe, Martha B. Arnaud, Mary K.B. Berlyn, Frederick R. Blattner, Roy R. Chaudhuri, Jeremy D. Glasner, Takashi Horiuchi, Ingrid M. Keseler, Takehide Kosuge, Hirotada Mori, Nicole T. Perna, Guy Plunkett, III, Kenneth E. Rudd, Margrethe H. Serres, Gavin H. Thomas, Nicholas R. Thomson, David Wishart, Barry L. Wanner

Nucleic Acids Res. 2006; 34(1): 1–9. Published online 2006 Jan 5. doi: 10.1093/nar/gkj405