PMC Links for GEO Profiles (Select 3574642) - PMC

Jie Zhang, Gongcheng Hu, Yuli Lu, Huawei Ren, Yin Huang, Yulin Wen, Binrui Ji, Diyang Wang, Haidong Wang, Huisheng Liu, Ning Ma, Lingling Zhang, Guangjin Pan, Yibo Qu, Hua Wang, Wei Zhang, Zhichao Miao, Hongjie Yao

Nat Commun. 2024; 15: 5524. Published online 2024 Jul 1. doi: 10.1038/s41467-024-49684-1

PMCID:: PMC11217373

Abstract Article PDF–5.1M

Select item 111941104.

Single-molecule imaging reveals a direct role of CTCF’s zinc fingers in SA interaction and cluster-dependent RNA recruitment

Jonas Huber, Nicoleta-Loredana Tanasie, Sarah Zernia, Johannes Stigler

Nucleic Acids Res. 2024 Jun 24; 52(11): 6490–6506. Published online 2024 May 14. doi: 10.1093/nar/gkae391

PMCID:: PMC11194110

Abstract Article PDF–2.1M

Select item 111052085.

The emerging roles for the chromatin structure regulators CTCF and cohesin in neurodevelopment and behavior

Liron Davis, Itay Onn, Evan Elliott

Cell Mol Life Sci. 2018 Apr; 75(7): 1205–1214. Published online 2017 Nov 6. doi: 10.1007/s00018-017-2706-7

PMCID:: PMC11105208

Abstract Article PDF–874K

Select item 109836696.

The N-terminal dimerization domains of human and Drosophila CTCF have similar functionality

Sofia Kamalyan, Olga Kyrchanova, Natalia Klimenko, Valentin Babosha, Yulia Vasileva, Elena Belova, Dariya Fursenko, Oksana Maksimenko, Pavel Georgiev

Epigenetics Chromatin. 2024; 17: 9. Published online 2024 Apr 1. doi: 10.1186/s13072-024-00534-w

PMCID:: PMC10983669

Abstract Article PDF–6.9M

Select item 109275667.

Host-encoded CTCF regulates human cytomegalovirus latency via chromatin looping

Ian J. Groves, Stephen M. Matthews, Christine M. O’Connor

Proc Natl Acad Sci U S A. 2024 Mar 5; 121(10): e2315860121. Published online 2024 Feb 26. doi: 10.1073/pnas.2315860121

PMCID:: PMC10927566

Abstract Article PDF–1.4M

Select item 109108718.

RPL35A drives ovarian cancer progression by promoting the binding of YY1 to CTCF promoter

Huijuan Wu, Liangbin Xia, Lu Sun, Dan Li, Xiangyu Liu, Hualin Song, Jindong Sheng, Ke Wang, Qinmei Feng

J Cell Mol Med. 2024 Mar; 28(6): e18115. Published online 2024 Mar 4. doi: 10.1111/jcmm.18115

PMCID:: PMC10910871

Abstract Article PDF–25M

Select item 107966189.

Differential DNA methylation and CTCF binding between the ESR1 promoter a of MCF-7 and MDA-MB-231 breast cancer cells

Edén Víctor Montes-de-Oca-Fuentes, Karina Jácome-López, Anaís Zarco-Mendoza, Georgina Guerrero, José Luis Ventura-Gallegos, Sergio Juárez-Méndez, Alberto Jose Cabrera-Quintero, Félix Recillas-Targa, Alejandro Zentella-Dehesa

Mol Biol Rep. 2024; 51(1): 148. Published online 2024 Jan 18. doi: 10.1007/s11033-023-09171-0

PMCID:: PMC10796618

Abstract Article PDF–1.2M

Select item 1076117910.

A SNAI2/CTCF Interaction is Required for NOTCH1 Expression in Rhabdomyosarcoma

Prethish Sreenivas, Long Wang, Meng Wang, Anil Challa, Paulomi Modi, Nicole Rae Hensch, Berkley Gryder, Hsien-Chao Chou, Xiang R. Zhao, Benjamin Sunkel, Rodrigo Moreno-Campos, Javed Khan, Benjamin Z. Stanton, Myron S. Ignatius

Mol Cell Biol. 2023; 43(11): 547–565. Published online 2023 Nov 17. doi: 10.1080/10985549.2023.2256640

PMCID:: PMC10761179

Abstract Article PDF–2.7M

Select item 1075029811.

Elevated enhancer-oncogene contacts and higher oncogene expression levels by recurrent CTCF inactivating mutations in acute T cell leukemia

Willem K. Smits, Carlo Vermeulen, Rico Hagelaar, Shunsuke Kimura, Eric M. Vroegindeweij, Jessica G.C.A.M. Buijs-Gladdines, Ellen van de Geer, Marjon J.A.M. Verstegen, Erik Splinter, Simon V. van Reijmersdal, Arjan Buijs, Niels Galjart, Winfried van Eyndhoven, Max van Min, Roland Kuiper, Patrick Kemmeren, Charles G. Mullighan, Wouter de Laat, Jules P.P. Meijerink

Cell Rep. Author manuscript; available in PMC 2023 Dec 26.

Published in final edited form as: Cell Rep. 2023 Apr 25; 42(4): 112373. Published online 2023 Apr 14. doi: 10.1016/j.celrep.2023.112373

PMCID:: PMC10750298

Abstract Article PDF–3.0M

Select item 1056587612.

Pulse-SILAC and Interactomics Reveal Distinct DDB1-CUL4–Associated Factors, Cellular Functions, and Protein Substrates

Jennifer Raisch, Marie-Line Dubois, Marika Groleau, Dominique Lévesque, Thomas Burger, Carla-Marie Jurkovic, Romain Brailly, Gwendoline Marbach, Alyson McKenna, Catherine Barrette, Pierre-Étienne Jacques, François-Michel Boisvert

Mol Cell Proteomics. 2023 Oct; 22(10): 100644. Published online 2023 Sep 7. doi: 10.1016/j.mcpro.2023.100644

PMCID:: PMC10565876

Abstract Article PDF–3.7M

Select item 1056242313.

Regulation of CTCF loop formation during pancreatic cell differentiation

Xiaowen Lyu, M. Jordan Rowley, Michael J. Kulik, Stephen Dalton, Victor G. Corces

Nat Commun. 2023; 14: 6314. Published online 2023 Oct 9. doi: 10.1038/s41467-023-41964-6

PMCID:: PMC10562423

Abstract Article PDF–8.1M

Select item 1048468314.

Structures of CTCF–DNA complexes including all 11 zinc fingers

Jie Yang, John R Horton, Bin Liu, Victor G Corces, Robert M Blumenthal, Xing Zhang, Xiaodong Cheng

Nucleic Acids Res. 2023 Sep 8; 51(16): 8447–8462. Published online 2023 Jul 13. doi: 10.1093/nar/gkad594

PMCID:: PMC10484683

Abstract Article PDF–3.1M

Select item 1043218815.

Combined CRISPRi and proteomics screening reveal a cohesin-CTCF-bound allele contributing to increased expression of RUVBL1 and prostate cancer progression

Yijun Tian, Dandan Dong, Zixian Wang, Lang Wu, Jong Y. Park, the PRACTICAL consortium, Gong-Hong Wei, Liang Wang

Am J Hum Genet. 2023 Aug 3; 110(8): 1289–1303. Published online 2023 Aug 3. doi: 10.1016/j.ajhg.2023.07.003

PMCID:: PMC10432188

Abstract Article PDF–4.1M

Select item 1026549316.

DNA architectural protein CTCF facilitates subset-specific chromatin interactions to limit the formation of memory CD8⁺ T cells

Sara Quon, Bingfei Yu, Brendan E. Russ, Kirill Tsyganov, Hongtuyet Nguyen, Clara Toma, Maximilian Heeg, James D. Hocker, J. Justin Milner, Shane Crotty, Matthew E. Pipkin, Stephen J. Turner, Ananda W. Goldrath

Immunity. Author manuscript; available in PMC 2024 May 9.

Published in final edited form as: Immunity. 2023 May 9; 56(5): 959–978.e10. Published online 2023 Apr 10. doi: 10.1016/j.immuni.2023.03.017

PMCID:: PMC10265493

Abstract Article PDF–3.1M

Select item 1023742217.

TRIM67 drives tumorigenesis in oligodendrogliomas through Rho GTPase-dependent membrane blebbing

Engin Demirdizen, Ruslan Al-Ali, Ashwin Narayanan, Xueyuan Sun, Julianna Patricia Varga, Bianca Steffl, Manuela Brom, Damir Krunic, Claudia Schmidt, Gabriele Schmidt, Felix Bestvater, Julian Taranda, Şevin Turcan

Neuro Oncol. 2023 Jun; 25(6): 1031–1043. Published online 2022 Nov 22. doi: 10.1093/neuonc/noac233

PMCID:: PMC10237422

Abstract Article PDF–23M

Select item 1016456418.

The ubiquitin-specific protease USP36 SUMOylates EXOSC10 and promotes the nucleolar RNA exosome function in rRNA processing

Yingxiao Chen, Yanping Li, Roselyn S Dai, Jonathan C Savage, Ujwal Shinde, John Klimek, Larry L David, Emma A Young, Markus Hafner, Rosalie C Sears, Xiao-Xin Sun, Mu-Shui Dai

Nucleic Acids Res. 2023 May 8; 51(8): 3934–3949. Published online 2023 Mar 13. doi: 10.1093/nar/gkad140

PMCID:: PMC10164564

Abstract Article PDF–3.8M

Select item 1016055019.

CTCF variant begets to short stature by down-regulation of IGF1

Hong Chen, Weiyu Li, Suping Zhang, Yunteng Sun, Yiping Shen, Ruimin Chen

J Mol Endocrinol. 2023 May 1; 70(4): e220193. Prepublished online 2023 Feb 27. Published online 2023 Apr 6. doi: 10.1530/JME-22-0193

PMCID:: PMC10160550

Abstract Article PDF–2.1M

Select item 1015442320.

BAP18 facilitates CTCF-mediated chromatin accessible to regulate enhancer activity in breast cancer

Ge Sun, Yuntao Wei, Baosheng Zhou, Manlin Wang, Ruina Luan, Yu Bai, Hao Li, Shan Wang, Dantong Zheng, Chunyu Wang, Shengli Wang, Kai Zeng, Shuchang Liu, Lin Lin, Mingcong He, Qiang Zhang, Yue Zhao

Cell Death Differ. 2023 May; 30(5): 1260–1278. Published online 2023 Feb 24. doi: 10.1038/s41418-023-01135-y

PMCID:: PMC10154423

Abstract Article PDF–3.8M

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