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Items: 1 to 20 of 30

1.
A comprehensive Drosophila resource to identify key functional interactions between SARS-CoV-2 factors and host proteins
Annabel Guichard, Shenzhao Lu, Oguz Kanca, Daniel Bressan, Yan Huang, Mengqi Ma, Sara Sanz Juste, Jonathan C. Andrews, Kristy L. Jay, Marketta Sneider, Ruth Schwartz, Mei-Chu Huang, Danqing Bei, Hongling Pan, Liwen Ma, Wen-Wen Lin, Ankush Auradkar, Pranjali Bhagwat, Soo Park, Kenneth H. Wan, Takashi Ohsako, Toshiyuki Takano-Shimizu, Susan E. Celniker, Michael F. Wangler, Shinya Yamamoto, Hugo J. Bellen, Ethan Bier
Cell Rep. Author manuscript; available in PMC 2024 Mar 25.
Published in final edited form as: Cell Rep. 2023 Aug 29; 42(8): 112842. Published online 2023 Jul 20. doi: 10.1016/j.celrep.2023.112842
PMCID:
PMC10962759
AbstractArticlePDF–3.0M
2.
Functional studies of genetic variants associated with human diseases in Notch signaling-related genes using Drosophila
Sheng-An Yang, Jose L. Salazar, David Li-Kroeger, Shinya Yamamoto
Methods Mol Biol. Author manuscript; available in PMC 2022 Aug 23.
Published in final edited form as: Methods Mol Biol. 2022; 2472: 235–276. doi: 10.1007/978-1-0716-2201-8_19
PMCID:
PMC9396741
AbstractArticlePDF–1.3M
3.
Inter-Species Rescue of Mutant Phenotype—The Standard for Genetic Analysis of Human Genetic Disorders in Drosophila melanogaster Model
Alexandru Al. Ecovoiu, Attila Cristian Ratiu, Miruna Mihaela Micheu, Mariana Carmen Chifiriuc
Int J Mol Sci. 2022 Mar; 23(5): 2613. Published online 2022 Feb 27. doi: 10.3390/ijms23052613
PMCID:
PMC8909942
AbstractArticlePDF–1.3M
4.
TM2D genes regulate Notch signaling and neuronal function in Drosophila
Jose L. Salazar, Sheng-An Yang, Yong Qi Lin, David Li-Kroeger, Paul C. Marcogliese, Samantha L. Deal, G. Gregory Neely, Shinya Yamamoto
PLoS Genet. 2021 Dec; 17(12): e1009962. Published online 2021 Dec 14. doi: 10.1371/journal.pgen.1009962
PMCID:
PMC8714088
AbstractArticlePDF–2.6M
5.
Genome-wide phenotypic RNAi screen in the Drosophila wing: phenotypic description of functional classes
Ana López-Varea, Patricia Vega-Cuesta, Ana Ruiz-Gómez, Cristina M Ostalé, Cristina Molnar, Covadonga F Hevia, Mercedes Martín, Maria F Organista, Jesus de Celis, Joaquín Culí, Nuria Esteban, Jose F de Celis
G3 (Bethesda) 2021 Dec; 11(12): jkab349. Published online 2021 Oct 2. doi: 10.1093/g3journal/jkab349
PMCID:
PMC8664486
AbstractArticlePDF–3.1M
6.
Post-Developmental Roles of Notch Signaling in the Nervous System
Jose L. Salazar, Sheng-An Yang, Shinya Yamamoto
Biomolecules. 2020 Jul; 10(7): 985. Published online 2020 Jul 1. doi: 10.3390/biom10070985
PMCID:
PMC7408554
AbstractArticlePDF–1.4M
7.
An expanded toolkit for gene tagging based on MiMIC and scarless CRISPR tagging in Drosophila
David Li-Kroeger, Oguz Kanca, Pei-Tseng Lee, Sierra Cowan, Michael T Lee, Manish Jaiswal, Jose Luis Salazar, Yuchun He, Zhongyuan Zuo, Hugo J Bellen
eLife. 2018; 7: e38709. Published online 2018 Aug 9. doi: 10.7554/eLife.38709
PMCID:
PMC6095692
AbstractArticlePDF–5.2M
8.
Genetic strategies to tackle neurological diseases in fruit flies
Mümine Sentürk, Hugo J. Bellen
Curr Opin Neurobiol. Author manuscript; available in PMC 2019 Jun 1.
Published in final edited form as: Curr Opin Neurobiol. 2018 Jun; 50: 24–32. Published online 2017 Nov 9. doi: 10.1016/j.conb.2017.10.017
PMCID:
PMC5940587
AbstractArticlePDF–1.4M
9.
Landscape and evolution of tissue-specific alternative polyadenylation across Drosophila species
Piero Sanfilippo, Jiayu Wen, Eric C. Lai
Genome Biol. 2017; 18: 229. Published online 2017 Nov 30. doi: 10.1186/s13059-017-1358-0
PMCID:
PMC5707805
AbstractArticlePDF–3.2M
10.
Transcription elongation rate has a tissue-specific impact on alternative cleavage and polyadenylation in Drosophila melanogaster
Xiaochuan Liu, Jaime Freitas, Dinghai Zheng, Marta S. Oliveira, Mainul Hoque, Torcato Martins, Telmo Henriques, Bin Tian, Alexandra Moreira
RNA. 2017 Dec; 23(12): 1807–1816. doi: 10.1261/rna.062661.117
PMCID:
PMC5689002
AbstractArticlePDF–4.0M
11.
Rare Functional Variant in TM2D3 is Associated with Late-Onset Alzheimer's Disease
Johanna Jakobsdottir, Sven J. van der Lee, Joshua C. Bis, Vincent Chouraki, David Li-Kroeger, Shinya Yamamoto, Megan L. Grove, Adam Naj, Maria Vronskaya, Jose L. Salazar, Anita L. DeStefano, Jennifer A. Brody, Albert V. Smith, Najaf Amin, Rebecca Sims, Carla A. Ibrahim-Verbaas, Seung-Hoan Choi, Claudia L. Satizabal, Oscar L. Lopez, Alexa Beiser, M. Arfan Ikram, Melissa E. Garcia, Caroline Hayward, Tibor V. Varga, Samuli Ripatti, Paul W. Franks, Göran Hallmans, Olov Rolandsson, Jan-Håkon Jansson, David J. Porteous, Veikko Salomaa, Gudny Eiriksdottir, Kenneth M. Rice, Hugo J. Bellen, Daniel Levy, Andre G. Uitterlinden, Valur Emilsson, Jerome I. Rotter, Thor Aspelund, Cohorts for Heart and Aging Research in Genomic Epidemiology consortium, Alzheimer’s Disease Genetic Consortium, Genetic and Environmental Risk in Alzheimer’s Disease consortium, Christopher J. O’Donnell, Annette L. Fitzpatrick, Lenore J. Launer, Albert Hofman, Li-San Wang, Julie Williams, Gerard D. Schellenberg, Eric Boerwinkle, Bruce M. Psaty, Sudha Seshadri, Joshua M. Shulman, Vilmundur Gudnason, Cornelia M. van Duijn
PLoS Genet. 2016 Oct; 12(10): e1006327. Published online 2016 Oct 20. doi: 10.1371/journal.pgen.1006327
Correction in:
PLoS Genet. 2016 Nov; 12(11): e1006456.
PMCID:
PMC5072721
AbstractArticlePDF–3.3M
12.
Gene Model Annotations for Drosophila melanogaster: The Rule-Benders
Madeline A. Crosby, L. Sian Gramates, Gilberto dos Santos, Beverley B. Matthews, Susan E. St. Pierre, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, David B. Emmert, Susan M. Russo, William M. Gelbart, the FlyBase Consortium
G3 (Bethesda) 2015 Aug; 5(8): 1737–1749. Published online 2015 Jun 24. doi: 10.1534/g3.115.018937
PMCID:
PMC4528330
AbstractArticlePDF–2.2M
13.
Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data
Beverley B. Matthews, Gilberto dos Santos, Madeline A. Crosby, David B. Emmert, Susan E. St. Pierre, L. Sian Gramates, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, Victor Strelets, Susan M. Russo, William M. Gelbart, the FlyBase Consortium
G3 (Bethesda) 2015 Aug; 5(8): 1721–1736. Published online 2015 Jun 24. doi: 10.1534/g3.115.018929
PMCID:
PMC4528329
AbstractArticlePDF–4.9M
14.
The Release 6 reference sequence of the Drosophila melanogaster genome
Roger A. Hoskins, Joseph W. Carlson, Kenneth H. Wan, Soo Park, Ivonne Mendez, Samuel E. Galle, Benjamin W. Booth, Barret D. Pfeiffer, Reed A. George, Robert Svirskas, Martin Krzywinski, Jacqueline Schein, Maria Carmela Accardo, Elisabetta Damia, Giovanni Messina, María Méndez-Lago, Beatriz de Pablos, Olga V. Demakova, Evgeniya N. Andreyeva, Lidiya V. Boldyreva, Marco Marra, A. Bernardo Carvalho, Patrizio Dimitri, Alfredo Villasante, Igor F. Zhimulev, Gerald M. Rubin, Gary H. Karpen, Susan E. Celniker
Genome Res. 2015 Mar; 25(3): 445–458. doi: 10.1101/gr.185579.114
PMCID:
PMC4352887
AbstractArticlePDF–1022K
15.
Phylostratigraphic Bias Creates Spurious Patterns of Genome Evolution
Bryan A. Moyers, Jianzhi Zhang
Mol Biol Evol. 2015 Jan 1; 32(1): 258–267. Published online 2014 Oct 13. doi: 10.1093/molbev/msu286
Correction in:
Mol Biol Evol. 2016 Nov; 33(11): 3031.
PMCID:
PMC4271527
AbstractArticlePDF–618K
16.
Genetic and Functional Studies Implicate Synaptic Overgrowth and Ring Gland cAMP/PKA Signaling Defects in the Drosophila melanogaster Neurofibromatosis-1 Growth Deficiency
James A. Walker, Jean Y. Gouzi, Jennifer B. Long, Sidong Huang, Robert C. Maher, Hongjing Xia, Kheyal Khalil, Arjun Ray, David Van Vactor, René Bernards, André Bernards
PLoS Genet. 2013 Nov; 9(11): e1003958. Published online 2013 Nov 21. doi: 10.1371/journal.pgen.1003958
PMCID:
PMC3836801
AbstractArticlePDF–5.8M
17.
Novel Synthetic Medea selfish genetic elements drive population replacement in Drosophila, and a theoretical exploration of Medea-dependent population suppression
Omar S. Akbari, Chun-Hong Chen, John M. Marshall, Haixia Huang, Igor Antoshechkin, Bruce A. Hay
ACS Synth Biol. Author manuscript; available in PMC 2015 Dec 19.
Published in final edited form as: ACS Synth Biol. 2014 Dec 19; 3(12): 915–928. Published online 2012 Dec 28. doi: 10.1021/sb300079h
PMCID:
PMC3742681
AbstractArticlePDF–1.3M
18.
High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression
Philippe Batut, Alexander Dobin, Charles Plessy, Piero Carninci, Thomas R. Gingeras
Genome Res. 2013 Jan; 23(1): 169–180. doi: 10.1101/gr.139618.112
PMCID:
PMC3530677
AbstractArticlePDF–1.5M
19.
The Many Landscapes of Recombination in Drosophila melanogaster
Josep M. Comeron, Ramesh Ratnappan, Samuel Bailin
PLoS Genet. 2012 Oct; 8(10): e1002905. Published online 2012 Oct 11. doi: 10.1371/journal.pgen.1002905
PMCID:
PMC3469467
AbstractArticlePDF–1.6M
20.
A Molecularly Defined Duplication Set for the X Chromosome of Drosophila melanogaster
Koen J. T. Venken, Ellen Popodi, Stacy L. Holtzman, Karen L. Schulze, Soo Park, Joseph W. Carlson, Roger A. Hoskins, Hugo J. Bellen, Thomas C. Kaufman
Genetics. 2010 Dec; 186(4): 1111–1125. doi: 10.1534/genetics.110.121285
PMCID:
PMC2998297
AbstractArticlePDF–2.6M

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