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Select item 108427211.

Self-reversal facilitates the resolution of HMCES DNA-protein crosslinks in cells

Jorge Rua-Fernandez, Courtney A. Lovejoy, Kavi P.M. Mehta, Katherine A. Paulin, Yasmine T. Toudji, Celeste Giansanti, Brandt F. Eichman, David Cortez

Cell Rep. Author manuscript; available in PMC 2024 Feb 5.

Published in final edited form as: Cell Rep. 2023 Nov 28; 42(11): 113427. Published online 2023 Nov 11. doi: 10.1016/j.celrep.2023.113427

PMCID:: PMC10842721

Abstract Article PDF–1.4M

Select item 105658762.

Pulse-SILAC and Interactomics Reveal Distinct DDB1-CUL4–Associated Factors, Cellular Functions, and Protein Substrates

Jennifer Raisch, Marie-Line Dubois, Marika Groleau, Dominique Lévesque, Thomas Burger, Carla-Marie Jurkovic, Romain Brailly, Gwendoline Marbach, Alyson McKenna, Catherine Barrette, Pierre-Étienne Jacques, François-Michel Boisvert

Mol Cell Proteomics. 2023 Oct; 22(10): 100644. Published online 2023 Sep 7. doi: 10.1016/j.mcpro.2023.100644

PMCID:: PMC10565876

Abstract Article PDF–3.7M

Select item 105059083.

A non‐proteolytic release mechanism for HMCES‐DNA‐protein crosslinks

Maximilian Donsbach, Sophie Dürauer, Florian Grünert, Kha T Nguyen, Richa Nigam, Denitsa Yaneva, Pedro Weickert, Rachel Bezalel‐Buch, Daniel R Semlow, Julian Stingele

EMBO J. 2023 Sep; 42(18): e113360. Published online 2023 Jul 31. doi: 10.15252/embj.2022113360

PMCID:: PMC10505908

Abstract Article PDF–1.5M

Select item 102021834.

SERBP1 Promotes Stress Granule Clearance by Regulating 26S Proteasome Activity and G3BP1 Ubiquitination and Protects Male Germ Cells from Thermostimuli Damage

Fengli Wang, Lingjuan Wang, Shiming Gan, Shenglei Feng, Sijin Ouyang, Xiaoli Wang, Shuiqiao Yuan

Research (Wash D C) 2023; 6: 0091. Published online 2023 Apr 12. doi: 10.34133/research.0091

PMCID:: PMC10202183

Abstract Article PDF–18M

Select item 98817295.

The FANCJ Helicase Unfolds DNA-Protein Cross-Links to Promote Their Repair

Denitsa Yaneva, Justin L. Sparks, Maximilian Donsbach, Shubo Zhao, Pedro Weickert, Rachel Bezalel-Buch, Julian Stingele, Johannes C. Walter

Mol Cell. Author manuscript; available in PMC 2024 Jan 5.

Published in final edited form as: Mol Cell. 2023 Jan 5; 83(1): 43–56.e10. doi: 10.1016/j.molcel.2022.12.005

PMCID:: PMC9881729

Abstract Article PDF–1.2M

Select item 92792856.

Scalable multiplex co-fractionation/mass spectrometry platform for accelerated protein interactome discovery

Pierre C. Havugimana, Raghuveera Kumar Goel, Sadhna Phanse, Ahmed Youssef, Dzmitry Padhorny, Sergei Kotelnikov, Dima Kozakov, Andrew Emili

Nat Commun. 2022; 13: 4043. Published online 2022 Jul 13. doi: 10.1038/s41467-022-31809-z

PMCID:: PMC9279285

Abstract Article PDF–2.5M

Select item 90674077.

HMCES protects immunoglobulin genes specifically from deletions during somatic hypermutation

Lizhen Wu, Vipul Shukla, Anurupa Devi Yadavalli, Ravi K. Dinesh, Dijin Xu, Anjana Rao, David G. Schatz

Genes Dev. 2022 Apr 1; 36(7-8): 433–450. doi: 10.1101/gad.349438.122

PMCID:: PMC9067407

Abstract Article PDF–11M

Select item 87554198.

Host E3 ligase HUWE1 attenuates the proapoptotic activity of the MERS-CoV accessory protein ORF3 by promoting its ubiquitin-dependent degradation

Yuzheng Zhou, Rong Zheng, Sixu Liu, Cyrollah Disoma, Ashuai Du, Shiqin Li, Zongpeng Chen, Zijun Dong, Yongxing Zhang, Sijia Li, Pinjia Liu, Aroona Razzaq, Xuan Chen, Yujie Liao, Siyi Tao, Yuxin Liu, Lunan Xu, Qianjun Zhang, Jian Peng, Xu Deng, Shanni Li, Taijiao Jiang, Zanxian Xia

J Biol Chem. 2022 Feb; 298(2): 101584. Published online 2022 Jan 13. doi: 10.1016/j.jbc.2022.101584

PMCID:: PMC8755419

Abstract Article PDF–3.5M

Select item 87489589.

EZH2 depletion potentiates MYC degradation inhibiting neuroblastoma and small cell carcinoma tumor formation

Liyuan Wang, Chan Chen, Zemin Song, Honghong Wang, Minghui Ye, Donghai Wang, Wenqian Kang, Hudan Liu, Guoliang Qing

Nat Commun. 2022; 13: 12. Published online 2022 Jan 10. doi: 10.1038/s41467-021-27609-6

PMCID:: PMC8748958

Abstract Article PDF–3.0M

Select item 860245110.

Identification of proximal SUMO-dependent interactors using SUMO-ID

Orhi Barroso-Gomila, Fredrik Trulsson, Veronica Muratore, Iñigo Canosa, Laura Merino-Cacho, Ana Rosa Cortazar, Coralia Pérez, Mikel Azkargorta, Ibon Iloro, Arkaitz Carracedo, Ana M. Aransay, Felix Elortza, Ugo Mayor, Alfred C. O. Vertegaal, Rosa Barrio, James D. Sutherland

Nat Commun. 2021; 12: 6671. Published online 2021 Nov 18. doi: 10.1038/s41467-021-26807-6

PMCID:: PMC8602451

Abstract Article PDF–11M

Select item 852757811.

An antibody-based proximity labeling map reveals mechanisms of SARS-CoV-2 inhibition of antiviral immunity

Yuehui Zhang, Limin Shang, Jing Zhang, Yuchen Liu, Chaozhi Jin, Yanan Zhao, Xiaobo Lei, Wenjing Wang, Xia Xiao, Xiuyuan Zhang, Yujiao Liu, Linlin Liu, Meng-Wei Zhuang, Qingkun Mi, Chunyan Tian, Jianwei Wang, Fuchu He, Pei-Hui Wang, Jian Wang

Cell Chem Biol. 2022 Jan 20; 29(1): 5–18.e6. Published online 2021 Oct 20. doi: 10.1016/j.chembiol.2021.10.008

PMCID:: PMC8527578

Abstract Article PDF–4.5M

Select item 851385312.

The proximal proteome of 17 SARS-CoV-2 proteins links to disrupted antiviral signaling and host translation

Jordan M. Meyers, Muthukumar Ramanathan, Ronald L. Shanderson, Aimee Beck, Laura Donohue, Ian Ferguson, Margaret G. Guo, Deepti S. Rao, Weili Miao, David Reynolds, Xue Yang, Yang Zhao, Yen-Yu Yang, Catherine Blish, Yinsheng Wang, Paul A. Khavari

PLoS Pathog. 2021 Oct; 17(10): e1009412. Published online 2021 Oct 1. doi: 10.1371/journal.ppat.1009412

PMCID:: PMC8513853

Abstract Article PDF–4.1M

Select item 818479613.

FBXO32 links ubiquitination to epigenetic reprograming of melanoma cells

Nadia Habel, Najla El-Hachem, Frédéric Soysouvanh, Hanene Hadhiri-Bzioueche, Serena Giuliano, Sophie Nguyen, Pavel Horák, Anne-Sophie Gay, Delphine Debayle, Nicolas Nottet, Guillaume Béranger, Brigitte Bressac-de Paillerets, Corine Bertolotto, Robert Ballotti

Cell Death Differ. 2021 Jun; 28(6): 1837–1848. Published online 2021 Jan 18. doi: 10.1038/s41418-020-00710-x

PMCID:: PMC8184796

Abstract Article PDF–2.4M

Select item 816503014.

Dual Proteome-scale Networks Reveal Cell-specific Remodeling of the Human Interactome

Edward L. Huttlin, Raphael J. Bruckner, Jose Navarrete-Perea, Joe R. Cannon, Kurt Baltier, Fana Gebreab, Melanie P. Gygi, Alexandra Thornock, Gabriela Zarraga, Stanley Tam, John Szpyt, Brandon M. Gassaway, Alexandra Panov, Hannah Parzen, Sipei Fu, Arvene Golbazi, Eila Maenpaa, Keegan Stricker, Sanjukta Guha Thakurta, Tian Zhang, Ramin Rad, Joshua Pan, David P. Nusinow, Joao A. Paulo, Devin K. Schweppe, Laura Pontano Vaites, J. Wade Harper, Steven P. Gygi

Cell. Author manuscript; available in PMC 2022 May 27.

Published in final edited form as: Cell. 2021 May 27; 184(11): 3022–3040.e28. Published online 2021 May 6. doi: 10.1016/j.cell.2021.04.011

PMCID:: PMC8165030

Abstract Article PDF–2.2M

Select item 804119215.

Loss of the abasic site sensor HMCES is synthetic lethal with the activity of the APOBEC3A cytosine deaminase in cancer cells

Josep Biayna, Isabel Garcia-Cao, Miguel M. Álvarez, Marina Salvadores, Jose Espinosa-Carrasco, Marcel McCullough, Fran Supek, Travis H. Stracker

PLoS Biol. 2021 Mar; 19(3): e3001176. Published online 2021 Mar 31. doi: 10.1371/journal.pbio.3001176

PMCID:: PMC8041192

Abstract Article PDF–3.6M

Select item 786461416.

The ubiquitin ligase RFWD3 is required for translesion DNA synthesis

Irene Gallina, Ivo A. Hendriks, Saskia Hoffmann, Nicolai B. Larsen, Joachim Johansen, Camilla S. Colding-Christensen, Lisa Schubert, Selene Sellés-Baiget, Zita Fábián, Ulrike Kühbacher, Alan O. Gao, Markus Räschle, Simon Rasmussen, Michael L. Nielsen, Niels Mailand, Julien P. Duxin

Mol Cell. 2021 Feb 4; 81(3): 442–458.e9. doi: 10.1016/j.molcel.2020.11.029

PMCID:: PMC7864614

Abstract Article

Select item 767285917.

5-Hydroxymethylation highlights the heterogeneity in keratinization and cell junctions in head and neck cancers

Siyu Liu, Marcell Costa de Medeiros, Evan M. Fernandez, Katie R. Zarins, Raymond G. Cavalcante, Tingting Qin, Gregory T. Wolf, Maria E. Figueroa, Nisha J. D’Silva, Laura S. Rozek, Maureen A. Sartor

Clin Epigenetics. 2020; 12: 175. Published online 2020 Nov 17. doi: 10.1186/s13148-020-00965-8

PMCID:: PMC7672859

Abstract Article PDF–2.9M

Select item 749454618.

Structural biology of DNA abasic site protection by SRAP proteins

Katherine M. Amidon, Brandt F. Eichman

DNA Repair (Amst) Author manuscript; available in PMC 2021 Oct 1.

Published in final edited form as: DNA Repair (Amst). 2020 Oct; 94: 102903. Published online 2020 Jun 29. doi: 10.1016/j.dnarep.2020.102903

PMCID:: PMC7494546

Abstract Article PDF–1.1M

Select item 731314419.

HMCES Maintains Replication Fork Progression and Prevents Double-Strand Breaks in Response to APOBEC Deamination and Abasic Site Formation

Kavi P.M. Mehta, Courtney A. Lovejoy, Runxiang Zhao, Darren R. Heintzman, David Cortez

Cell Rep. Author manuscript; available in PMC 2020 Jun 24.

Published in final edited form as: Cell Rep. 2020 Jun 2; 31(9): 107705. doi: 10.1016/j.celrep.2020.107705

PMCID:: PMC7313144

Abstract Article PDF–1.1M

Select item 727133120.

HMCES safeguards replication from oxidative stress and ensures error‐free repair

Mrinal Srivastava, Dan Su, Huimin Zhang, Zhen Chen, Mengfan Tang, Litong Nie, Junjie Chen

EMBO Rep. 2020 Jun 4; 21(6): e49123. Published online 2020 Apr 19. doi: 10.15252/embr.201949123

PMCID:: PMC7271331

Abstract Article PDF–1.6M

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