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Select item 105658761.

Pulse-SILAC and Interactomics Reveal Distinct DDB1-CUL4–Associated Factors, Cellular Functions, and Protein Substrates

Jennifer Raisch, Marie-Line Dubois, Marika Groleau, Dominique Lévesque, Thomas Burger, Carla-Marie Jurkovic, Romain Brailly, Gwendoline Marbach, Alyson McKenna, Catherine Barrette, Pierre-Étienne Jacques, François-Michel Boisvert

Mol Cell Proteomics. 2023 Oct; 22(10): 100644. Published online 2023 Sep 7. doi: 10.1016/j.mcpro.2023.100644

PMCID:: PMC10565876

Abstract Article PDF–3.7M

Select item 81650302.

Dual Proteome-scale Networks Reveal Cell-specific Remodeling of the Human Interactome

Edward L. Huttlin, Raphael J. Bruckner, Jose Navarrete-Perea, Joe R. Cannon, Kurt Baltier, Fana Gebreab, Melanie P. Gygi, Alexandra Thornock, Gabriela Zarraga, Stanley Tam, John Szpyt, Brandon M. Gassaway, Alexandra Panov, Hannah Parzen, Sipei Fu, Arvene Golbazi, Eila Maenpaa, Keegan Stricker, Sanjukta Guha Thakurta, Tian Zhang, Ramin Rad, Joshua Pan, David P. Nusinow, Joao A. Paulo, Devin K. Schweppe, Laura Pontano Vaites, J. Wade Harper, Steven P. Gygi

Cell. Author manuscript; available in PMC 2022 May 27.

Published in final edited form as: Cell. 2021 May 27; 184(11): 3022–3040.e28. Published online 2021 May 6. doi: 10.1016/j.cell.2021.04.011

PMCID:: PMC8165030

Abstract Article PDF–2.2M

Select item 54648303.

Identification of DBCCR1 as a suppressor in the development of lung cancer that is associated with increased DNA methyltransferase 1

Guoren Zhou, Jinjun Ye, Ying Fang, Zhi Zhang, Jingyuan Zhang, Lei Sun, Jifeng Feng

Oncotarget. 2017 May 16; 8(20): 32821–32832. Published online 2017 Mar 2. doi: 10.18632/oncotarget.15826

PMCID:: PMC5464830

Abstract Article PDF–4.3M

Select item 48159824.

HIPK2 restricts SIRT1 activity upon severe DNA damage by a phosphorylation-controlled mechanism

E Conrad, T Polonio-Vallon, M Meister, S Matt, N Bitomsky, C Herbel, M Liebl, V Greiner, B Kriznik, S Schumacher, E Krieghoff-Henning, T G Hofmann

Cell Death Differ. 2016 Jan; 23(1): 110–122. Published online 2015 Jun 26. doi: 10.1038/cdd.2015.75

PMCID:: PMC4815982

Abstract Article PDF–2.0M

Select item 46172115.

The BioPlex Network: A Systematic Exploration of the Human Interactome

Edward L. Huttlin, Lily Ting, Raphael J. Bruckner, Fana Gebreab, Melanie P. Gygi, John Szpyt, Stanley Tam, Gabriela Zarraga, Greg Colby, Kurt Baltier, Rui Dong, Virginia Guarani, Laura Pontano Vaites, Alban Ordureau, Ramin Rad, Brian K. Erickson, Martin Wühr, Joel Chick, Bo Zhai, Deepak Kolippakkam, Julian Mintseris, Robert A. Obar, Tim Harris, Spyros Artavanis-Tsakonas, Mathew E. Sowa, Pietro DeCamilli, Joao A. Paulo, J. Wade Harper, Steven P. Gygi

Cell. Author manuscript; available in PMC 2016 Jul 16.

Published in final edited form as: Cell. 2015 Jul 16; 162(2): 425–440. doi: 10.1016/j.cell.2015.06.043

PMCID:: PMC4617211

Abstract Article PDF–2.2M

Select item 43511876.

DBC1 Functions as a Tumor Suppressor by Regulating p53 Stability

Bo Qin, Katherine Minter-Dykhouse, Jia Yu, Jun Zhang, Tongzheng Liu, Haoxing Zhang, Seung Baek Lee, Jung Jin Kim, Liewei Wang, Zhenkun Lou

Cell Rep. Author manuscript; available in PMC 2016 Mar 3.

Published in final edited form as: Cell Rep. 2015 Mar 3; 10(8): 1324–1334. Published online 2015 Feb 26. doi: 10.1016/j.celrep.2015.01.066

PMCID:: PMC4351187

Abstract Article PDF–2.3M

Select item 36309927.

DBC1 (Deleted in Breast Cancer 1) modulates the stability and function of the nuclear receptor Rev-erbα

Claudia C. S. Chini, Carlos Escande, Veronica Nin, Eduardo N. Chini

Biochem J. 2013 May 1; 451(Pt 3): 453–461. Prepublished online 2013 Feb 12. Published online 2013 Apr 12. doi: 10.1042/BJ20121085

PMCID:: PMC3630992

Abstract Article PDF–935K

Select item 36242498.

A High-Confidence Interaction Map Identifies SIRT1 as a Mediator of Acetylation of USP22 and the SAGA Coactivator Complex

Sean M. Armour, Eric J. Bennett, Craig R. Braun, Xiao-Yong Zhang, Steven B. McMahon, Steven P. Gygi, J. Wade Harper, David A. Sinclair

Mol Cell Biol. 2013 Apr; 33(8): 1487–1502. doi: 10.1128/MCB.00971-12

PMCID:: PMC3624249

Abstract Article PDF–3.4M

Select item 35487799.

The SIRT1 Modulators AROS and DBC1 Regulate HSF1 Activity and the Heat Shock Response

Rachel Raynes, Kathleen M. Pombier, Kevin Nguyen, Jessica Brunquell, Jamie E. Mendez, Sandy D. Westerheide

PLoS One. 2013; 8(1): e54364. Published online 2013 Jan 18. doi: 10.1371/journal.pone.0054364

PMCID:: PMC3548779

Abstract Article PDF–1.2M

Select item 337803510.

DBIRD integrates alternative mRNA splicing with RNA polymerase II transcript elongation

Pierre Close, Philip East, A. Barbara Dirac-Svejstrup, Holger Hartmann, Mark Heron, Sarah Maslen, Alain Chariot, Johannes Söding, Mark Skehel, Jesper Q. Svejstrup

Nature. Author manuscript; available in PMC 2012 Oct 19.

Published in final edited form as: Nature. 2012 Mar 25; 484(7394): 386–389. Published online 2012 Mar 25. doi: 10.1038/nature10925

PMCID:: PMC3378035

Abstract Article PDF–1.2M

Select item 333745311.

Regulation of SIRT1 activity by genotoxic stress

Jian Yuan, Kuntian Luo, Tongzheng Liu, Zhenkun Lou

Genes Dev. 2012 Apr 15; 26(8): 791–796. doi: 10.1101/gad.188482.112

PMCID:: PMC3337453

Abstract Article PDF–1.0M

Select item 326170812.

Toward an understanding of the protein interaction network of the human liver

Jian Wang, Keke Huo, Lixin Ma, Liujun Tang, Dong Li, Xiaobi Huang, Yanzhi Yuan, Chunhua Li, Wei Wang, Wei Guan, Hui Chen, Chaozhi Jin, Junchen Wei, Wanqiao Zhang, Yongsheng Yang, Qiongming Liu, Ying Zhou, Cuili Zhang, Zhihao Wu, Wangxiang Xu, Ying Zhang, Tao Liu, Donghui Yu, Yaping Zhang, Liang Chen, Dewu Zhu, Xing Zhong, Lixin Kang, Xiang Gan, Xiaolan Yu, Qi Ma, Jing Yan, Li Zhou, Zhongyang Liu, Yunping Zhu, Tao Zhou, Fuchu He, Xiaoming Yang

Mol Syst Biol. 2011; 7: 536. Published online 2011 Oct 11. doi: 10.1038/msb.2011.67

Correction in:: Mol Syst Biol. 2017 Dec; 13(12): 965.

PMCID:: PMC3261708

Abstract Article PDF–2.0M

Select item 317805913.

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas

Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042

PMCID:: PMC3178059

Abstract Article PDF–1.0M

Select item 300338414.

HDAC3 Is Negatively Regulated by the Nuclear Protein DBC1

Claudia C. S. Chini, Carlos Escande, Veronica Nin, Eduardo N. Chini

J Biol Chem. 2010 Dec 24; 285(52): 40830–40837. Published online 2010 Oct 28. doi: 10.1074/jbc.M110.153270

PMCID:: PMC3003384

Abstract Article PDF–1.0M

Select item 289646415.

Personalized Smoking Cessation: Interactions between Nicotine Dose, Dependence and Quit-Success Genotype Score

Jed E Rose, Frédérique M Behm, Tomas Drgon, Catherine Johnson, George R Uhl

Mol Med. 2010 Jul-Aug; 16(7-8): 247–253. Published online 2010 Mar 17. doi: 10.2119/molmed.2009.00159

Correction in:: Mol Med. 2012; 18(1): 729.

PMCID:: PMC2896464

Abstract Article PDF–2.4M

Select item 286628716.

Negative regulation of the deacetylase SIRT1 by DBC1

Wenhui Zhao, Jan-Philipp Kruse, Yi Tang, Sung Yun Jung, Jun Qin, Wei Gu

Nature. Author manuscript; available in PMC 2010 May 10.

Published in final edited form as: Nature. 2008 Jan 31; 451(7178): 587–590. doi: 10.1038/nature06515

PMCID:: PMC2866287

Abstract Article PDF–1.4M

Select item 285371717.

Genome-wide association study confirms SNPs in SNCA and the MAPT region as common risk factors for Parkinson disease

Todd L. Edwards, William K. Scott, Cherylyn Almonte, Amber Burt, Eric H. Powell, Gary W. Beecham, Liyong Wang, Stephan Züchner, Ioanna Konidari, Gaofeng Wang, Carlos Singer, Fatta Nahab, Burton Scott, Jeffrey M. Stajich, Margaret Pericak-Vance, Jonathan Haines, Jeffery M. Vance, Eden R. Martin

Ann Hum Genet. Author manuscript; available in PMC 2011 Mar 1.

Published in final edited form as: Ann Hum Genet. 2010 Mar; 74(2): 97–109. Published online 2010 Jan 8. doi: 10.1111/j.1469-1809.2009.00560.x

PMCID:: PMC2853717

Abstract Article PDF–345K

Select item 273408118.

DNA sequence and analysis of human chromosome 9

S. J. Humphray, K. Oliver, A. R. Hunt, R. W. Plumb, J. E. Loveland, K. L. Howe, T. D. Andrews, S. Searle, S. E. Hunt, C. E. Scott, M. C. Jones, R. Ainscough, J. P. Almeida, K. D. Ambrose, R. I. S. Ashwell, A. K. Babbage, S. Babbage, C. L. Bagguley, J. Bailey, R. Banerjee, D. J. Barker, K. F. Barlow, K. Bates, H. Beasley, O. Beasley, C. P. Bird, S. Bray-Allen, A. J. Brown, J. Y. Brown, D. Burford, W. Burrill, J. Burton, C. Carder, N. P. Carter, J. C. Chapman, Y. Chen, G. Clarke, S. Y. Clark, C. M. Clee, S. Clegg, R. E. Collier, N. Corby, M. Crosier, A. T. Cummings, J. Davies, P. Dhami, M. Dunn, I. Dutta, L. W. Dyer, M. E. Earthrowl, L. Faulkner, C. J. Fleming, A. Frankish, J. A. Frankland, L. French, D. G. Fricker, P. Garner, J. Garnett, J. Ghori, J. G. R. Gilbert, C. Glison, D. V. Grafham, S. Gribble, C. Griffiths, S. Griffiths-Jones, R. Grocock, J. Guy, R. E. Hall, S. Hammond, J. L. Harley, E. S. I. Harrison, E. A. Hart, P. D. Heath, C. D. Henderson, B. L. Hopkins, P. J. Howard, P. J. Howden, E. Huckle, C. Johnson, D. Johnson, A. A. Joy, M. Kay, S. Keenan, J. K. Kershaw, A. M. Kimberley, A. King, A. Knights, G. K. Laird, C. Langford, S. Lawlor, D. A. Leongamornlert, M. Leversha, C. Lloyd, D. M. Lloyd, J. Lovell, S. Martin, M. Mashreghi-Mohammadi, L. Matthews, S. McLaren, K. E. McLay, A. McMurray, S. Milne, T. Nickerson, J. Nisbett, G. Nordsiek, A. V. Pearce, A. I. Peck, K. M. Porter, R. Pandian, S. Pelan, B. Phillimore, S. Povey, Y. Ramsey, V. Rand, M. Scharfe, H. K. Sehra, R. Shownkeen, S. K. Sims, C. D. Skuce, M. Smith, C. A. Steward, D. Swarbreck, N. Sycamore, J. Tester, A. Thorpe, A. Tracey, A. Tromans, D. W. Thomas, M. Wall, J. M. Wallis, A. P. West, S. L. Whitehead, D. L. Willey, S. A. Williams, L. Wilming, P. W. Wray, L. Young, J. L. Ashurst, A. Coulson, H. Blöcker, R. Durbin, J. E. Sulston, T. Hubbard, M. J. Jackson, D. R. Bentley, S. Beck, J. Rogers, I. Dunham

Nature. Author manuscript; available in PMC 2009 Aug 28.

Published in final edited form as: Nature. 2004 May 27; 429(6990): 369–374. doi: 10.1038/nature02465

PMCID:: PMC2734081

Abstract Article PDF–1006K

Select item 266772319.

Inhibition of SUV39H1 Methyltransferase Activity by DBC1

Zhenyu Li, Lihong Chen, Neha Kabra, Chuangui Wang, Jia Fang, Jiandong Chen

J Biol Chem. 2009 Apr 17; 284(16): 10361–10366. doi: 10.1074/jbc.M900956200

PMCID:: PMC2667723

Abstract Article PDF–447K

Select item 52892820.

The Status, Quality, and Expansion of the NIH Full-Length cDNA Project: The Mammalian Gene Collection (MGC)

Genome Res. 2004 Oct; 14(10b): 2121–2127. doi: 10.1101/gr.2596504

Correction in:: Genome Res. 2006 Jun; 16(6): 804.

PMCID:: PMC528928

Abstract Article PDF–140K

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