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Items: 1 to 20 of 34

1.
TFOFinder: Python program for identifying purine-only double-stranded stretches in the predicted secondary structure(s) of RNA targets
Atara Neugroschl, Irina E. Catrina
PLoS Comput Biol. 2023 Aug; 19(8): e1011418. Published online 2023 Aug 25. doi: 10.1371/journal.pcbi.1011418
PMCID:
PMC10484449
AbstractArticlePDF–3.1M
2.
Updates on ion and water transport by the Malpighian tubule
Julian A T Dow, Sue Ann Krause, Pawel Herzyk
Curr Opin Insect Sci. 2021 Oct; 47: 31–37. doi: 10.1016/j.cois.2021.02.018
PMCID:
PMC9586879
AbstractArticle
3.
Photoperiod-Dependent Expression of MicroRNA in Drosophila
Mirko Pegoraro, Bettina Fishman, Valeria Zonato, Georgios Zouganelis, Amanda Francis, Charalambos P. Kyriacou, Eran Tauber
Int J Mol Sci. 2022 May; 23(9): 4935. Published online 2022 Apr 29. doi: 10.3390/ijms23094935
PMCID:
PMC9100521
AbstractArticlePDF–1.5M
4.
Comprehensive Identification and Alternative Splicing of Microexons in Drosophila
Ting-Lin Pang, Zhan Ding, Shao-Bo Liang, Liang Li, Bei Zhang, Yu Zhang, Yu-Jie Fan, Yong-Zhen Xu
Front Genet. 2021; 12: 642602. Published online 2021 Mar 30. doi: 10.3389/fgene.2021.642602
PMCID:
PMC8042270
AbstractArticlePDF–3.6M
5.
Extracellular heparan sulfate proteoglycans and glycan-binding lectins orchestrate trans-synaptic signaling
Emma Rushton, Danielle L. Kopke, Kendal Broadie
J Cell Sci. 2020 Aug 1; 133(15): jcs244186. Published online 2020 Aug 11. doi: 10.1242/jcs.244186
PMCID:
PMC7438005
AbstractArticle
6.
CRISPR-based modular assembly of a UAS-cDNA/ORF plasmid library for more than 5500 Drosophila genes conserved in humans
Ping Wei, Wen Xue, Yun Zhao, Guang Ning, Jiwu Wang
Genome Res. 2020 Jan; 30(1): 95–106. doi: 10.1101/gr.250811.119
PMCID:
PMC6961578
AbstractArticlePDF–3.6M
7.
The same domain of Su(Hw) is required for enhancer blocking and direct promoter repression
Larisa Melnikova, Pavel Elizar’ev, Maksim Erokhin, Varvara Molodina, Darya Chetverina, Margarita Kostyuchenko, Pavel Georgiev, Anton Golovnin
Sci Rep. 2019; 9: 5314. Published online 2019 Mar 29. doi: 10.1038/s41598-019-41761-6
PMCID:
PMC6441048
AbstractArticlePDF–2.7M
8.
Cellular diversity in the Drosophila midbrain revealed by single-cell transcriptomics
Vincent Croset, Christoph D Treiber, Scott Waddell
eLife. 2018; 7: e34550. Published online 2018 Apr 19. doi: 10.7554/eLife.34550
PMCID:
PMC5927767
AbstractArticlePDF–6.7M
9.
Landscape and evolution of tissue-specific alternative polyadenylation across Drosophila species
Piero Sanfilippo, Jiayu Wen, Eric C. Lai
Genome Biol. 2017; 18: 229. Published online 2017 Nov 30. doi: 10.1186/s13059-017-1358-0
PMCID:
PMC5707805
AbstractArticlePDF–3.2M
10.
Transcription elongation rate has a tissue-specific impact on alternative cleavage and polyadenylation in Drosophila melanogaster
Xiaochuan Liu, Jaime Freitas, Dinghai Zheng, Marta S. Oliveira, Mainul Hoque, Torcato Martins, Telmo Henriques, Bin Tian, Alexandra Moreira
RNA. 2017 Dec; 23(12): 1807–1816. doi: 10.1261/rna.062661.117
PMCID:
PMC5689002
AbstractArticlePDF–4.0M
11.
A genetic interaction map of cell cycle regulators
Maximilian Billmann, Thomas Horn, Bernd Fischer, Thomas Sandmann, Wolfgang Huber, Michael Boutros
Mol Biol Cell. 2016 Apr 15; 27(8): 1397–1407. doi: 10.1091/mbc.E15-07-0467
PMCID:
PMC4831891
AbstractArticlePDF–4.0M
12.
Genome-wide identification and characterization of tissue-specific RNA editing events in D. melanogaster and their potential role in regulating alternative splicing
Alborz Mazloomian, Irmtraud M Meyer
RNA Biol. 2015 Dec; 12(12): 1391–1401. Published online 2015 Oct 29. doi: 10.1080/15476286.2015.1107703
PMCID:
PMC4829317
AbstractArticlePDF–609K
13.
Phenotype-based clustering of glycosylation-related genes by RNAi-mediated gene silencing
Miki Yamamoto-Hino, Hideki Yoshida, Tomomi Ichimiya, Sho Sakamura, Megumi Maeda, Yoshinobu Kimura, Norihiko Sasaki, Kiyoko F Aoki-Kinoshita, Akiko Kinoshita-Toyoda, Hidenao Toyoda, Ryu Ueda, Shoko Nishihara, Satoshi Goto
Genes Cells. 2015 Jun; 20(6): 521–542. Published online 2015 May 4. doi: 10.1111/gtc.12246
PMCID:
PMC4682476
AbstractArticlePDF–1.1M
14.
Putative synaptic genes defined from a Drosophila whole body developmental transcriptome by a machine learning approach
Flavio Pazos Obregón, Cecilia Papalardo, Sebastián Castro, Gustavo Guerberoff, Rafael Cantera
BMC Genomics. 2015; 16(1): 694. Published online 2015 Sep 15. doi: 10.1186/s12864-015-1888-3
PMCID:
PMC4570697
AbstractArticlePDF–2.0M
15.
Gene Model Annotations for Drosophila melanogaster: The Rule-Benders
Madeline A. Crosby, L. Sian Gramates, Gilberto dos Santos, Beverley B. Matthews, Susan E. St. Pierre, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, David B. Emmert, Susan M. Russo, William M. Gelbart, the FlyBase Consortium
G3 (Bethesda) 2015 Aug; 5(8): 1737–1749. Published online 2015 Jun 24. doi: 10.1534/g3.115.018937
PMCID:
PMC4528330
AbstractArticlePDF–2.2M
16.
Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data
Beverley B. Matthews, Gilberto dos Santos, Madeline A. Crosby, David B. Emmert, Susan E. St. Pierre, L. Sian Gramates, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, Victor Strelets, Susan M. Russo, William M. Gelbart, the FlyBase Consortium
G3 (Bethesda) 2015 Aug; 5(8): 1721–1736. Published online 2015 Jun 24. doi: 10.1534/g3.115.018929
PMCID:
PMC4528329
AbstractArticlePDF–4.9M
17.
Identification of Drosophila Mutants Affecting Defense to an Entomopathogenic Fungus
Hsiao-Ling Lu, Jonathan B. Wang, Markus A. Brown, Christopher Euerle, Raymond J. St. Leger
Sci Rep. 2015; 5: 12350. Published online 2015 Jul 23. doi: 10.1038/srep12350
PMCID:
PMC4511952
AbstractArticlePDF–1.5M
18.
The Genetic Basis for Variation in Olfactory Behavior in Drosophila melanogaster
Gunjan H. Arya, Michael M. Magwire, Wen Huang, Yazmin L. Serrano-Negron, Trudy F.C. Mackay, Robert R.H. Anholt
Chem Senses. 2015 May; 40(4): 233–243. Published online 2015 Feb 15. doi: 10.1093/chemse/bjv001
PMCID:
PMC4398050
AbstractArticlePDF–8.9M
19.
The Release 6 reference sequence of the Drosophila melanogaster genome
Roger A. Hoskins, Joseph W. Carlson, Kenneth H. Wan, Soo Park, Ivonne Mendez, Samuel E. Galle, Benjamin W. Booth, Barret D. Pfeiffer, Reed A. George, Robert Svirskas, Martin Krzywinski, Jacqueline Schein, Maria Carmela Accardo, Elisabetta Damia, Giovanni Messina, María Méndez-Lago, Beatriz de Pablos, Olga V. Demakova, Evgeniya N. Andreyeva, Lidiya V. Boldyreva, Marco Marra, A. Bernardo Carvalho, Patrizio Dimitri, Alfredo Villasante, Igor F. Zhimulev, Gerald M. Rubin, Gary H. Karpen, Susan E. Celniker
Genome Res. 2015 Mar; 25(3): 445–458. doi: 10.1101/gr.185579.114
PMCID:
PMC4352887
AbstractArticlePDF–1022K
20.
Phylostratigraphic Bias Creates Spurious Patterns of Genome Evolution
Bryan A. Moyers, Jianzhi Zhang
Mol Biol Evol. 2015 Jan 1; 32(1): 258–267. Published online 2014 Oct 13. doi: 10.1093/molbev/msu286
Correction in:
Mol Biol Evol. 2016 Nov; 33(11): 3031.
PMCID:
PMC4271527
AbstractArticlePDF–618K

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