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Select item 104844491.

TFOFinder: Python program for identifying purine-only double-stranded stretches in the predicted secondary structure(s) of RNA targets

Atara Neugroschl, Irina E. Catrina

PLoS Comput Biol. 2023 Aug; 19(8): e1011418. Published online 2023 Aug 25. doi: 10.1371/journal.pcbi.1011418

PMCID:: PMC10484449

Abstract Article PDF–3.1M

Select item 104457302.

Separation of transcriptional repressor and activator functions in Drosophila HDAC3

Min Tang, Isabel Regadas, Sergey Belikov, Olga Shilkova, Lei Xu, Erik Wernersson, Xuewen Liu, Hongmei Wu, Magda Bienko, Mattias Mannervik

Development. 2023 Aug 1; 150(15): dev201548. Published online 2023 Aug 2. doi: 10.1242/dev.201548

PMCID:: PMC10445730

Abstract Article

Select item 101528013.

Deacetylase-dependent and -independent role of HDAC3 in cardiomyopathy

Jieyu Ren, Qun Zeng, Hongmei Wu, Xuewen Liu, Maria C. Guida, Wen Huang, Yiyuan Zhai, Junjie Li, Karen Ocorr, Rolf Bodmer, Min Tang

J Cell Physiol. Author manuscript; available in PMC 2023 May 2.

Published in final edited form as: J Cell Physiol. 2023 Mar; 238(3): 647–658. Published online 2023 Feb 6. doi: 10.1002/jcp.30957

PMCID:: PMC10152801

Abstract Article PDF–2.5M

Select item 98902384.

Systematic identification and characterization of repressive domains in Drosophila transcription factors

Loni Klaus, Bernardo P de Almeida, Anna Vlasova, Filip Nemčko, Alexander Schleiffer, Katharina Bergauer, Lorena Hofbauer, Martina Rath, Alexander Stark

EMBO J. 2023 Feb; 42(3): e112100. Published online 2022 Dec 22. doi: 10.15252/embj.2022112100

PMCID:: PMC9890238

Abstract Article PDF–1.2M

Select item 97134315.

Transcriptome analysis of FOXO-dependent hypoxia gene expression identifies Hipk as a regulator of low oxygen tolerance in Drosophila

Kate Ding, Elizabeth C Barretto, Michael Johnston, Byoungchun Lee, Marco Gallo, Savraj S Grewal

G3 (Bethesda) 2022 Dec; 12(12): jkac263. Published online 2022 Oct 6. doi: 10.1093/g3journal/jkac263

PMCID:: PMC9713431

Abstract Article PDF–1.0M

Select item 89833906.

Drosophila functional screening of de novo variants in autism uncovers damaging variants and facilitates discovery of rare neurodevelopmental diseases

Paul C. Marcogliese, Samantha L. Deal, Jonathan Andrews, J. Michael Harnish, V. Hemanjani Bhavana, Hillary K. Graves, Sharayu Jangam, Xi Luo, Ning Liu, Danqing Bei, Yu-Hsin Chao, Brooke Hull, Pei-Tseng Lee, Hongling Pan, Pradnya Bhadane, Mei-Chu Huang, Colleen M. Longley, Hsiao-Tuan Chao, Hyung-lok Chung, Nele A. Haelterman, Oguz Kanca, Sathiya N. Manivannan, Linda Z. Rossetti, Ryan J. German, Amanda Gerard, Eva Maria Christina Schwaibold, Sarah Fehr, Renzo Guerrini, Annalisa Vetro, Eleina England, Chaya N. Murali, Tahsin Stefan Barakat, Marieke F. van Dooren, Martina Wilke, Marjon van Slegtenhorst, Gaetan Lesca, Isabelle Sabatier, Nicolas Chatron, Catherine A. Brownstein, Jill A. Madden, Pankaj B. Agrawal, Boris Keren, Thomas Courtin, Laurence Perrin, Melanie Brugger, Timo Roser, Steffen Leiz, Frederic Tran Mau-Them, Julian Delanne, Elena Sukarova-Angelovska, Slavica Trajkova, Erik Rosenhahn, Vincent Strehlow, Konrad Platzer, Roberto Keller, Lisa Pavinato, Alfredo Brusco, Jill A. Rosenfeld, Ronit Marom, Michael F. Wangler, Shinya Yamamoto

Cell Rep. Author manuscript; available in PMC 2022 Apr 6.

Published in final edited form as: Cell Rep. 2022 Mar 15; 38(11): 110517. doi: 10.1016/j.celrep.2022.110517

PMCID:: PMC8983390

Abstract Article PDF–2.9M

Select item 89608067.

Genetic variation of macronutrient tolerance in Drosophila melanogaster

E. Havula, S. Ghazanfar, N. Lamichane, D. Francis, K. Hasygar, Y. Liu, L. A. Alton, J. Johnstone, E. J. Needham, T. Pulpitel, T. Clark, H. N. Niranjan, V. Shang, V. Tong, N. Jiwnani, G. Audia, A. N. Alves, L. Sylow, C. Mirth, G. G. Neely, J. Yang, V. Hietakangas, S. J. Simpson, A. M. Senior

Nat Commun. 2022; 13: 1637. Published online 2022 Mar 28. doi: 10.1038/s41467-022-29183-x

PMCID:: PMC8960806

Abstract Article PDF–3.3M

Select item 89310028.

Maintenance of mitochondrial integrity in midbrain dopaminergic neurons governed by a conserved developmental transcription factor

Federico Miozzo, Eva P. Valencia-Alarcón, Luca Stickley, Michaëla Majcin Dorcikova, Francesco Petrelli, Damla Tas, Nicolas Loncle, Irina Nikonenko, Peter Bou Dib, Emi Nagoshi

Nat Commun. 2022; 13: 1426. Published online 2022 Mar 17. doi: 10.1038/s41467-022-29075-0

PMCID:: PMC8931002

Abstract Article PDF–6.9M

Select item 86698349.

Tumor–host interactions through the lens of Drosophila

David Bilder, Katy Ong, Tsai-Ching Hsi, Kavya Adiga, Jung Kim

Nat Rev Cancer. Author manuscript; available in PMC 2022 May 1.

Published in final edited form as: Nat Rev Cancer. 2021 Nov; 21(11): 687–700. Published online 2021 Aug 13. doi: 10.1038/s41568-021-00387-5

PMCID:: PMC8669834

Abstract Article PDF–385K

Select item 866448610.

Genome-wide phenotypic RNAi screen in the Drosophila wing: phenotypic description of functional classes

Ana López-Varea, Patricia Vega-Cuesta, Ana Ruiz-Gómez, Cristina M Ostalé, Cristina Molnar, Covadonga F Hevia, Mercedes Martín, Maria F Organista, Jesus de Celis, Joaquín Culí, Nuria Esteban, Jose F de Celis

G3 (Bethesda) 2021 Dec; 11(12): jkab349. Published online 2021 Oct 2. doi: 10.1093/g3journal/jkab349

PMCID:: PMC8664486

Abstract Article PDF–3.1M

Select item 804569811.

Natural genetic variation in Drosophila melanogaster reveals genes associated with Coxiella burnetii infection

Rosa M Guzman, Zachary P Howard, Ziying Liu, Ryan D Oliveira, Alisha T Massa, Anders Omsland, Stephen N White, Alan G Goodman

Genetics. 2021 Mar; 217(3): iyab005. Published online 2021 Jan 23. doi: 10.1093/genetics/iyab005

PMCID:: PMC8045698

Abstract Article PDF–695K

Select item 764864812.

A single-cell atlas and lineage analysis of the adult Drosophila ovary

Katja Rust, Lauren E. Byrnes, Kevin Shengyang Yu, Jason S. Park, Julie B. Sneddon, Aaron D. Tward, Todd G. Nystul

Nat Commun. 2020; 11: 5628. Published online 2020 Nov 6. doi: 10.1038/s41467-020-19361-0

Correction in:: Nat Commun. 2021; 12: 5951.

PMCID:: PMC7648648

Abstract Article PDF–6.1M

Select item 698345013.

A cell atlas of the adult Drosophila midgut

Ruei-Jiun Hung, Yanhui Hu, Rory Kirchner, Yifang Liu, Chiwei Xu, Aram Comjean, Sudhir Gopal Tattikota, Fangge Li, Wei Song, Shannan Ho Sui, Norbert Perrimon

Proc Natl Acad Sci U S A. 2020 Jan 21; 117(3): 1514–1523. Published online 2020 Jan 8. doi: 10.1073/pnas.1916820117

PMCID:: PMC6983450

Abstract Article PDF–11M

Select item 694504214.

A Genetic Screen for Genes That Impact Peroxisomes in Drosophila Identifies Candidate Genes for Human Disease

Hillary K. Graves, Sharayu Jangam, Kai Li Tan, Antonella Pignata, Elaine S. Seto, Shinya Yamamoto, Michael F. Wangler

G3 (Bethesda) 2020 Jan; 10(1): 69–77. Published online 2019 Nov 25. doi: 10.1534/g3.119.400803

PMCID:: PMC6945042

Abstract Article PDF–2.2M

Select item 694501215.

The Genetics of Male Pheromone Preference Difference Between Drosophila melanogaster and Drosophila simulans

Michael P. Shahandeh, Alison Pischedda, Jason M. Rodriguez, Thomas L. Turner

G3 (Bethesda) 2020 Jan; 10(1): 401–415. Published online 2019 Nov 20. doi: 10.1534/g3.119.400780

PMCID:: PMC6945012

Abstract Article PDF–1.9M

Select item 662268716.

Sexually Dimorphic Shaping of Interneuron Dendrites Involves the Hunchback Transcription Factor

Junpei Goto, Yoshitaka Mikawa, Masayuki Koganezawa, Hiroki Ito, Daisuke Yamamoto

J Neurosci. 2011 Apr 6; 31(14): 5454–5459. doi: 10.1523/JNEUROSCI.4861-10.2011

PMCID:: PMC6622687

Abstract Article PDF–2.9M

Select item 612381017.

Circulating glucose levels inversely correlate with Drosophila larval feeding through insulin signaling and SLC5A11

Rupali Ugrankar, Pano Theodoropoulos, Fatih Akdemir, W. Mike Henne, Jonathan M. Graff

Commun Biol. 2018; 1: 110. Published online 2018 Aug 13. doi: 10.1038/s42003-018-0109-4

PMCID:: PMC6123810

Abstract Article PDF–3.4M

Select item 585532018.

Activation of the Notch Signaling Pathway In Vivo Elicits Changes in CSL Nuclear Dynamics

Maria J. Gomez-Lamarca, Julia Falo-Sanjuan, Robert Stojnic, Sohaib Abdul Rehman, Leila Muresan, Matthew L. Jones, Zoe Pillidge, Gustavo Cerda-Moya, Zhenyu Yuan, Sarah Baloul, Phillippe Valenti, Kerstin Bystricky, Francois Payre, Kevin O'Holleran, Rhett Kovall, Sarah J. Bray

Dev Cell. 2018 Mar 12; 44(5): 611–623.e7. doi: 10.1016/j.devcel.2018.01.020

PMCID:: PMC5855320

Abstract Article

Select item 580949519.

A Fat-Facets-Dscam1-JNK Pathway Enhances Axonal Growth in Development and after Injury

Marta Koch, Maya Nicolas, Marlen Zschaetzsch, Natalie de Geest, Annelies Claeys, Jiekun Yan, Matthew J. Morgan, Maria-Luise Erfurth, Matthew Holt, Dietmar Schmucker, Bassem A. Hassan

Front Cell Neurosci. 2017; 11: 416. Published online 2018 Feb 8. doi: 10.3389/fncel.2017.00416

PMCID:: PMC5809495

Abstract Article PDF–3.3M

Select item 577097520.

Regulation of Adult CNS Axonal Regeneration by the Post-transcriptional Regulator Cpeb1

Wilson Pak-Kin Lou, Alvaro Mateos, Marta Koch, Stefan Klussman, Chao Yang, Na Lu, Sachin Kumar, Stefanie Limpert, Manuel Göpferich, Marlen Zschaetzsch, Christopher Sliwinski, Marc Kenzelmann, Matthias Seedorf, Carlos Maillo, Elena Senis, Dirk Grimm, Radhika Puttagunta, Raul Mendez, Kai Liu, Bassem A. Hassan, Ana Martin-Villalba

Front Mol Neurosci. 2017; 10: 445. Published online 2018 Jan 12. doi: 10.3389/fnmol.2017.00445

PMCID:: PMC5770975

Abstract Article PDF–8.3M

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