PMC Links for GEO Profiles (Select 3778008) - PMC

Select item 102324771.

In vivo CRISPR screens reveal Serpinb9 and Adam2 as regulators of immune therapy response in lung cancer

Dzana Dervovic, Ahmad A. Malik, Edward L. Y. Chen, Masahiro Narimatsu, Nina Adler, Somaieh Afiuni-Zadeh, Dagmar Krenbek, Sebastien Martinez, Ricky Tsai, Jonathan Boucher, Jacob M. Berman, Katie Teng, Arshad Ayyaz, YiQing Lü, Geraldine Mbamalu, Sampath K. Loganathan, Jongbok Lee, Li Zhang, Cynthia Guidos, Jeffrey Wrana, Arschang Valipour, Philippe P. Roux, Jüri Reimand, Hartland W. Jackson, Daniel Schramek

Nat Commun. 2023; 14: 3150. Published online 2023 May 31. doi: 10.1038/s41467-023-38841-7

Correction in:: Nat Commun. 2023; 14: 5404.

PMCID:: PMC10232477

Abstract Article PDF–3.2M

Select item 79271542.

Direct Tumor Killing and Immunotherapy through Anti-SerpinB9 Therapy

Liwei Jiang, Yi-Jun Wang, Jing Zhao, Mayuko Uehara, Qingming Hou, Vivek Kasinath, Takaharu Ichimura, Naima Banouni, Li Dai, Xiaofei Li, Dale L. Greiner, Leonard D. Shultz, Xiaolong Zhang, Zhen-Yu Jim Sun, Ian Curtin, Nicholas E. Vangos, Zoe C. Yeoh, Ezekiel A. Geffken, Hyuk-Soo Seo, Ze-Xian Liu, Gregory J. Heffron, Khalid Shah, Sirano Dhe-Paganon, Reza Abdi

Cell. Author manuscript; available in PMC 2021 Mar 3.

Published in final edited form as: Cell. 2020 Nov 25; 183(5): 1219–1233.e18. doi: 10.1016/j.cell.2020.10.045

PMCID:: PMC7927154

Abstract Article PDF–3.1M

Select item 52909903.

Widespread and dynamic translational control of red blood cell development

Juan R. Alvarez-Dominguez, Xu Zhang, Wenqian Hu

Blood. 2017 Feb 2; 129(5): 619–629. Prepublished online 2016 Nov 29. doi: 10.1182/blood-2016-09-741835

PMCID:: PMC5290990

Abstract Article

Select item 52231594.

Quantitative proteomic profiling of the extracellular matrix of pancreatic islets during the angiogenic switch and insulinoma progression

Alexandra Naba, Karl R. Clauser, D. R. Mani, Steven A. Carr, Richard O. Hynes

Sci Rep. 2017; 7: 40495. Published online 2017 Jan 10. doi: 10.1038/srep40495

PMCID:: PMC5223159

Abstract Article PDF–2.3M

Select item 47514005.

A Novel Serpin Regulatory Mechanism: SerpinB9 IS REVERSIBLY INHIBITED BY VICINAL DISULFIDE BOND FORMATION IN THE REACTIVE CENTER LOOP

Matthew S. J. Mangan, Catherina H. Bird, Dion Kaiserman, Anthony Y. Matthews, Corinne Hitchen, David L. Steer, Philip E. Thompson, Phillip I. Bird

J Biol Chem. 2016 Feb 12; 291(7): 3626–3638. Published online 2015 Dec 15. doi: 10.1074/jbc.M115.699298

PMCID:: PMC4751400

Abstract Article PDF–1.5M

Select item 42637546.

A Natural Genetic Variant of Granzyme B Confers Lethality to a Common Viral Infection

Christopher E. Andoniou, Vivien R. Sutton, Matthew E. Wikstrom, Peter Fleming, Kevin Y. T. Thia, Antony Y. Matthews, Dion Kaiserman, Iona S. Schuster, Jerome D. Coudert, Preethi Eldi, Geeta Chaudhri, Gunasegaran Karupiah, Phillip I. Bird, Joseph A. Trapani, Mariapia A. Degli-Esposti

PLoS Pathog. 2014 Dec; 10(12): e1004526. Published online 2014 Dec 11. doi: 10.1371/journal.ppat.1004526

PMCID:: PMC4263754

Abstract Article PDF–4.6M

Select item 39010707.

Global discovery of erythroid long noncoding RNAs reveals novel regulators of red cell maturation

Juan R. Alvarez-Dominguez, Wenqian Hu, Bingbing Yuan, Jiahai Shi, Staphany S. Park, Austin A. Gromatzky, Alexander van Oudenaarden, Harvey F. Lodish

Blood. 2014 Jan 23; 123(4): 570–581. Prepublished online 2013 Nov 7. doi: 10.1182/blood-2013-10-530683

PMCID:: PMC3901070

Abstract Article

Select item 38800778.

Update of the human and mouse SERPIN gene superfamily

Claire Heit, Brian C Jackson, Monica McAndrews, Mathew W Wright, David C Thompson, Gary A Silverman, Daniel W Nebert, Vasilis Vasiliou

Hum Genomics. 2013; 7(1): 22. Published online 2013 Oct 30. doi: 10.1186/1479-7364-7-22

PMCID:: PMC3880077

Abstract Article PDF–595K

Select item 37500989.

Serine protease inhibitor-6 plays a critical role in protecting murine Granzyme B-producing regulatory T-cells

Jamil Azzi, Nikolaos Skartsis, Marwan Mounayar, Ciara N. Magee, Ibrahim Batal, Christopher Ting, Robert Moore, Leonardo V. Riella, Shunsuke Ohori, Rozita Abdoli, Brian Smith, Paolo Fiorina, Dean Heathcote, Tannous Bakhos, Philip G. Ashton-Rickardt, Reza Abdi

J Immunol. Author manuscript; available in PMC 2014 Sep 1.

Published in final edited form as: J Immunol. 2013 Sep 1; 191(5): 2319–2327. Published online 2013 Aug 2. doi: 10.4049/jimmunol.1300851

PMCID:: PMC3750098

Abstract Article PDF–1.7M

Select item 332084710.

Mesenchymal stem cells express serine protease inhibitor to evade the host immune response

Najib El Haddad, Dean Heathcote, Robert Moore, Sunmi Yang, Jamil Azzi, Bechara Mfarrej, Mark Atkinson, Mohamed H. Sayegh, Jeng-Shin Lee, Philip G. Ashton-Rickardt, Reza Abdi

Blood. 2011 Jan 27; 117(4): 1176–1183. Prepublished online 2010 Nov 12. doi: 10.1182/blood-2010-06-287979

PMCID:: PMC3320847

Abstract Article

Select item 327030111.

Serine Protease Inhibitor 6 is required to protect dendritic cells from the kiss of death

Elena Lovo, Manling Zhang, Philip G. Ashton-Rickardt

J Immunol. Author manuscript; available in PMC 2012 Aug 1.

Published in final edited form as: J Immunol. 2012 Feb 1; 188(3): 1057–1063. Published online 2012 Jan 6. doi: 10.4049/jimmunol.1102667

PMCID:: PMC3270301

Abstract Article PDF–1.2M

Select item 317805912.

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas

Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042

PMCID:: PMC3178059

Abstract Article PDF–1.0M

Select item 265953513.

The Role of Serpinb9/Serine Protease Inhibitor 6 in Preventing Granzyme B—Dependent Hepatotoxicity

Heather W. Stout-Delgado, Yonas Getachew, Thomas E. Rogers, Bonnie C. Miller, Dwain L. Thiele

Hepatology. Author manuscript; available in PMC 2009 Mar 23.

Published in final edited form as: Hepatology. 2007 Nov; 46(5): 1530–1540. doi: 10.1002/hep.21820

PMCID:: PMC2659535

Abstract Article PDF–1.3M

Select item 265427714.

Intrahepatic Lymphocyte Expression of Dipeptidyl Peptidase I-Processed Granzyme B and Perforin Induces Hepatocyte Expression of Serine Proteinase Inhibitor 6 (Serpinb9/SPI-6)

Heather W. Stout-Delgado, Yonas Getachew, Bonnie C. Miller, Dwain L. Thiele

J Immunol. Author manuscript; available in PMC 2009 Mar 11.

Published in final edited form as: J Immunol. 2007 Nov 15; 179(10): 6561–6567. doi: 10.4049/jimmunol.179.10.6561

PMCID:: PMC2654277

Abstract Article PDF–922K

Select item 169844615.

DNA methylation regulates long-range gene silencing of an X-linked homeobox gene cluster in a lineage-specific manner

Masaaki Oda, Akiko Yamagiwa, Shinji Yamamoto, Takao Nakayama, Akiko Tsumura, Hiroshi Sasaki, Kazuki Nakao, En Li, Masaki Okano

Genes Dev. 2006 Dec 15; 20(24): 3382–3394. doi: 10.1101/gad.1470906

PMCID:: PMC1698446

Abstract Article PDF–1.0M

Select item 143038216.

Cloning and Characterization of Cbl-associated Protein Splicing Isoforms

Mei Zhang, Akiko Kimura, Alan R Saltiel

Mol Med. 2003 Jan-Feb; 9(1-2): 18–25.

PMCID:: PMC1430382

Abstract Article PDF–1.4M

Select item 31099217.

RIKEN Integrated Sequence Analysis (RISA) System—384-Format Sequencing Pipeline with 384 Multicapillary Sequencer

Kazuhiro Shibata, Masayoshi Itoh, Katsunori Aizawa, Sumiharu Nagaoka, Nobuya Sasaki, Piero Carninci, Hideaki Konno, Junichi Akiyama, Katsuo Nishi, Tokuji Kitsunai, Hideo Tashiro, Mari Itoh, Noriko Sumi, Yoshiyuki Ishii, Shin Nakamura, Makoto Hazama, Tsutomu Nishine, Akira Harada, Rintaro Yamamoto, Hiroyuki Matsumoto, Sumito Sakaguchi, Takashi Ikegami, Katsuya Kashiwagi, Syuji Fujiwake, Kouji Inoue, Yoshiyuki Togawa, Masaki Izawa, Eiji Ohara, Masanori Watahiki, Yuko Yoneda, Tomokazu Ishikawa, Kaori Ozawa, Takumi Tanaka, Shuji Matsuura, Jun Kawai, Yasushi Okazaki, Masami Muramatsu, Yorinao Inoue, Akira Kira, Yoshihide Hayashizaki

Genome Res. 2000 Nov; 10(11): 1757–1771. doi: 10.1101/gr.152600

PMCID:: PMC310992

Abstract Article PDF–3.4M

Select item 31098018.

Normalization and Subtraction of Cap-Trapper-Selected cDNAs to Prepare Full-Length cDNA Libraries for Rapid Discovery of New Genes

Piero Carninci, Yuko Shibata, Norihito Hayatsu, Yuichi Sugahara, Kazuhiro Shibata, Masayoshi Itoh, Hideaki Konno, Yasushi Okazaki, Masami Muramatsu, Yoshihide Hayashizaki

Genome Res. 2000 Oct; 10(10): 1617–1630. doi: 10.1101/gr.145100

PMCID:: PMC310980

Abstract Article PDF–1.4M

Select item 13924119.

Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences

Mammalian Gene Collection (MGC) Program Team

Proc Natl Acad Sci U S A. 2002 Dec 24; 99(26): 16899–16903. Published online 2002 Dec 11. doi: 10.1073/pnas.242603899

PMCID:: PMC139241

Abstract Article PDF–118K

Select item 1683320.

Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray

Tetsuya S. Tanaka, Saied A. Jaradat, Meng K. Lim, George J. Kargul, Xiaohong Wang, Marija J. Grahovac, Serafino Pantano, Yuri Sano, Yulan Piao, Ramaiah Nagaraja, Hirofumi Doi, William H. Wood, III, Kevin G. Becker, Minoru S. H. Ko

Proc Natl Acad Sci U S A. 2000 Aug 1; 97(16): 9127–9132. doi: 10.1073/pnas.97.16.9127

PMCID:: PMC16833

Abstract Article PDF–847K

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