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Items: 1 to 20 of 46

1.
Histone locus bodies: a paradigm for how nuclear biomolecular condensates control cell cycle regulated gene expression
Mark S. Geisler, James P. Kemp, Jr., Robert J. Duronio
Nucleus. 2023; 14(1): 2293604. Published online 2023 Dec 14. doi: 10.1080/19491034.2023.2293604
PMCID:
PMC10730174
AbstractArticlePDF–1.0M
2.
Next-generation large-scale binary protein interaction network for Drosophila melanogaster
Hong-Wen Tang, Kerstin Spirohn, Yanhui Hu, Tong Hao, István A. Kovács, Yue Gao, Richard Binari, Donghui Yang-Zhou, Kenneth H. Wan, Joel S. Bader, Dawit Balcha, Wenting Bian, Benjamin W. Booth, Atina G. Coté, Steffi de Rouck, Alice Desbuleux, Kah Yong Goh, Dae-Kyum Kim, Jennifer J. Knapp, Wen Xing Lee, Irma Lemmens, Cathleen Li, Mian Li, Roujia Li, Hyobin Julianne Lim, Yifang Liu, Katja Luck, Dylan Markey, Carl Pollis, Sudharshan Rangarajan, Jonathan Rodiger, Sadie Schlabach, Yun Shen, Dayag Sheykhkarimli, Bridget TeeKing, Frederick P. Roth, Jan Tavernier, Michael A. Calderwood, David E. Hill, Susan E. Celniker, Marc Vidal, Norbert Perrimon, Stephanie E. Mohr
Nat Commun. 2023; 14: 2162. Published online 2023 Apr 15. doi: 10.1038/s41467-023-37876-0
PMCID:
PMC10105736
AbstractArticlePDF–3.2M
3.
A neurogenetic mechanism of experience-dependent suppression of aggression
Kenichi Ishii, Matteo Cortese, Xubo Leng, Maxim N. Shokhirev, Kenta Asahina
Sci Adv. 2022 Sep; 8(36): eabg3203. Published online 2022 Sep 7. doi: 10.1126/sciadv.abg3203
PMCID:
PMC9451153
AbstractArticlePDF–5.6M
4.
Genome-wide phenotypic RNAi screen in the Drosophila wing: phenotypic description of functional classes
Ana López-Varea, Patricia Vega-Cuesta, Ana Ruiz-Gómez, Cristina M Ostalé, Cristina Molnar, Covadonga F Hevia, Mercedes Martín, Maria F Organista, Jesus de Celis, Joaquín Culí, Nuria Esteban, Jose F de Celis
G3 (Bethesda) 2021 Dec; 11(12): jkab349. Published online 2021 Oct 2. doi: 10.1093/g3journal/jkab349
PMCID:
PMC8664486
AbstractArticlePDF–3.1M
5.
Use of circular RNAs as markers of readthrough transcription to identify factors regulating cleavage/polyadenylation events
Dongming Liang, Deirdre C. Tatomer, Jeremy E. Wilusz
Methods. Author manuscript; available in PMC 2022 Dec 1.
Published in final edited form as: Methods. 2021 Dec; 196: 121–128. Published online 2021 Apr 18. doi: 10.1016/j.ymeth.2021.04.012
PMCID:
PMC8522170
AbstractArticlePDF–1.1M
6.
CRISPR-based modular assembly of a UAS-cDNA/ORF plasmid library for more than 5500 Drosophila genes conserved in humans
Ping Wei, Wen Xue, Yun Zhao, Guang Ning, Jiwu Wang
Genome Res. 2020 Jan; 30(1): 95–106. doi: 10.1101/gr.250811.119
PMCID:
PMC6961578
AbstractArticlePDF–3.6M
7.
The TORC1-regulated CPA complex rewires an RNA processing network to drive autophagy and metabolic reprogramming
Hong-Wen Tang, Yanhui Hu, Chiao-Lin Chen, Baolong Xia, Jonathan Zirin, Min Yuan, John M. Asara, Leonard Rabinow, Norbert Perrimon
Cell Metab. Author manuscript; available in PMC 2019 May 1.
Published in final edited form as: Cell Metab. 2018 May 1; 27(5): 1040–1054.e8. Published online 2018 Mar 29. doi: 10.1016/j.cmet.2018.02.023
PMCID:
PMC6100782
AbstractArticlePDF–1.9M
8.
Comparative transcriptomics across 14 Drosophila species reveals signatures of longevity
Siming Ma, Andrei S. Avanesov, Emily Porter, Byung Cheon Lee, Marco Mariotti, Nadezhda Zemskaya, Roderic Guigo, Alexey A. Moskalev, Vadim N. Gladyshev
Aging Cell. 2018 Aug; 17(4): e12740. Published online 2018 Apr 19. doi: 10.1111/acel.12740
PMCID:
PMC6052463
AbstractArticlePDF–1.3M
9.
Protein composition of catalytically active U7-dependent processing complexes assembled on histone pre-mRNA containing biotin and a photo-cleavable linker
Aleksandra Skrajna, Xiao-cui Yang, Michał Dadlez, William F Marzluff, Zbigniew Dominski
Nucleic Acids Res. 2018 May 18; 46(9): 4752–4770. Published online 2018 Feb 26. doi: 10.1093/nar/gky133
PMCID:
PMC5961079
AbstractArticlePDF–3.0M
10.
The output of protein-coding genes shifts to circular RNAs when the pre-mRNA processing machinery is limiting
Dongming Liang, Deirdre C. Tatomer, Zheng Luo, Huang Wu, Li Yang, Ling-Ling Chen, Sara Cherry, Jeremy E. Wilusz
Mol Cell. Author manuscript; available in PMC 2018 Dec 7.
Published in final edited form as: Mol Cell. 2017 Dec 7; 68(5): 940–954.e3. Published online 2017 Nov 22. doi: 10.1016/j.molcel.2017.10.034
PMCID:
PMC5728686
AbstractArticlePDF–3.1M
11.
Landscape and evolution of tissue-specific alternative polyadenylation across Drosophila species
Piero Sanfilippo, Jiayu Wen, Eric C. Lai
Genome Biol. 2017; 18: 229. Published online 2017 Nov 30. doi: 10.1186/s13059-017-1358-0
PMCID:
PMC5707805
AbstractArticlePDF–3.2M
12.
Transcription elongation rate has a tissue-specific impact on alternative cleavage and polyadenylation in Drosophila melanogaster
Xiaochuan Liu, Jaime Freitas, Dinghai Zheng, Marta S. Oliveira, Mainul Hoque, Torcato Martins, Telmo Henriques, Bin Tian, Alexandra Moreira
RNA. 2017 Dec; 23(12): 1807–1816. doi: 10.1261/rna.062661.117
PMCID:
PMC5689002
AbstractArticlePDF–4.0M
13.
U7 snRNP is recruited to histone pre-mRNA in a FLASH-dependent manner by two separate regions of the stem–loop binding protein
Aleksandra Skrajna, Xiao-cui Yang, Katarzyna Bucholc, Jun Zhang, Traci M. Tanaka Hall, Michał Dadlez, William F. Marzluff, Zbigniew Dominski
RNA. 2017 Jun; 23(6): 938–951. doi: 10.1261/rna.060806.117
PMCID:
PMC5435866
AbstractArticlePDF–1.2M
14.
Drosophila melanogaster retrotransposon and inverted repeat-derived endogenous siRNAs are differentially processed in distinct cellular locations
Andrew W. Harrington, Michael R. McKain, Daniel Michalski, Kaylyn M. Bauer, Joshua M. Daugherty, Mindy Steiniger
BMC Genomics. 2017; 18: 304. Published online 2017 Apr 17. doi: 10.1186/s12864-017-3692-8
PMCID:
PMC5392987
AbstractArticlePDF–1.4M
15.
Proteome-wide association studies identify biochemical modules associated with a wing-size phenotype in Drosophila melanogaster
Hirokazu Okada, H. Alexander Ebhardt, Sibylle Chantal Vonesch, Ruedi Aebersold, Ernst Hafen
Nat Commun. 2016; 7: 12649. Published online 2016 Sep 1. doi: 10.1038/ncomms12649
PMCID:
PMC5025782
AbstractArticlePDF–2.2M
16.
Cutoff suppresses RNA polymerase II termination to ensure expression of piRNA precursors
Yung-Chia Ariel Chen, Evelyn Stuwe, Yicheng Luo, Maria Ninova, Adrien Le Thomas, Ekaterina Rozhavskaya, Sisi Li, Sivani Vempati, John D. Laver, Dinshaw J. Patel, Craig A. Smibert, Howard D. Lipshitz, Katalin Fejes Toth, Alexei A. Aravin
Mol Cell. Author manuscript; available in PMC 2017 Jul 7.
Published in final edited form as: Mol Cell. 2016 Jul 7; 63(1): 97–109. Published online 2016 Jun 9. doi: 10.1016/j.molcel.2016.05.010
PMCID:
PMC4980073
AbstractArticlePDF–1.6M
17.
mRNA-Associated Processes and Their Influence on Exon-Intron Structure in Drosophila melanogaster
Gildas Lepennetier, Francesco Catania
G3 (Bethesda) 2016 Jun; 6(6): 1617–1626. Published online 2016 Mar 28. doi: 10.1534/g3.116.029231
PMCID:
PMC4889658
AbstractArticlePDF–1.5M
18.
A genetic interaction map of cell cycle regulators
Maximilian Billmann, Thomas Horn, Bernd Fischer, Thomas Sandmann, Wolfgang Huber, Michael Boutros
Mol Biol Cell. 2016 Apr 15; 27(8): 1397–1407. doi: 10.1091/mbc.E15-07-0467
PMCID:
PMC4831891
AbstractArticlePDF–4.0M
19.
Proteome-wide dataset supporting the study of ancient metazoan macromolecular complexes
Sadhna Phanse, Cuihong Wan, Blake Borgeson, Fan Tu, Kevin Drew, Greg Clark, Xuejian Xiong, Olga Kagan, Julian Kwan, Alexandr Bezginov, Kyle Chessman, Swati Pal, Graham Cromar, Ophelia Papoulas, Zuyao Ni, Daniel R. Boutz, Snejana Stoilova, Pierre C. Havugimana, Xinghua Guo, Ramy H. Malty, Mihail Sarov, Jack Greenblatt, Mohan Babu, W. Brent Derry, Elisabeth R. Tillier, John B. Wallingford, John Parkinson, Edward M. Marcotte, Andrew Emili
Data Brief. 2016 Mar; 6: 715–721. Published online 2015 Dec 12. doi: 10.1016/j.dib.2015.11.062
PMCID:
PMC4738005
AbstractArticlePDF–205K
20.
Suppressor of sable [Su(s)] and Wdr82 down-regulate RNA from heat-shock-inducible repetitive elements by a mechanism that involves transcription termination
Paul Brewer-Jensen, Carrie B. Wilson, John Abernethy, Lonna Mollison, Samantha Card, Lillie L. Searles
RNA. 2016 Jan; 22(1): 139–154. doi: 10.1261/rna.048819.114
PMCID:
PMC4691828
AbstractArticlePDF–586K

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