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Items: 1 to 20 of 29

1.
A modERN resource: identification of Drosophila transcription factor candidate target genes using RNAi
William W Fisher, Ann S Hammonds, Richard Weiszmann, Benjamin W Booth, Louis Gevirtzman, Jaeda E J Patton, Connor A Kubo, Robert H Waterston, Susan E Celniker
Genetics. 2023 Apr; 223(4): iyad004. Published online 2023 Jan 19. doi: 10.1093/genetics/iyad004
PMCID:
PMC10078917
AbstractArticlePDF–18M
2.
Transcriptome analysis of FOXO-dependent hypoxia gene expression identifies Hipk as a regulator of low oxygen tolerance in Drosophila
Kate Ding, Elizabeth C Barretto, Michael Johnston, Byoungchun Lee, Marco Gallo, Savraj S Grewal
G3 (Bethesda) 2022 Dec; 12(12): jkac263. Published online 2022 Oct 6. doi: 10.1093/g3journal/jkac263
PMCID:
PMC9713431
AbstractArticlePDF–1.0M
3.
Enteric bacterial infection in Drosophila induces whole-body alterations in metabolic gene expression independently of the immune deficiency signaling pathway
Rujuta Deshpande, Byoungchun Lee, Savraj S Grewal
G3 (Bethesda) 2022 Nov; 12(11): jkac163. Published online 2022 Jul 4. doi: 10.1093/g3journal/jkac163
PMCID:
PMC9635644
AbstractArticlePDF–2.2M
4.
Identification of PSMB5 as a genetic modifier of fragile X–associated tremor/ataxia syndrome
Ha Eun Kong, Junghwa Lim, Alexander Linsalata, Yunhee Kang, Indranil Malik, Emily G. Allen, Yiqu Cao, Lisa Shubeck, Rich Johnston, Yanting Huang, Yanghong Gu, Xiangxue Guo, Michael E. Zwick, Zhaohui Qin, Thomas S. Wingo, Jorge Juncos, David L. Nelson, Michael P. Epstein, David J. Cutler, Peter K. Todd, Stephanie L. Sherman, Stephen T. Warren, Peng Jin
Proc Natl Acad Sci U S A. 2022 May 31; 119(22): e2118124119. Published online 2022 May 26. doi: 10.1073/pnas.2118124119
PMCID:
PMC9295734
AbstractArticlePDF–2.3M
5.
Admixture Mapping of Alzheimer’s disease in Caribbean Hispanics identifies a new locus on 22q13.1
Caghan Kizil, Sanjeev Sariya, Yoon A. Kim, Farid Rajabli, Eden Martin, Dolly Reyes-Dumeyer, Badri Vardarajan, Aleyda Maldonado, Jonathan L. Haines, Richard Mayeux, Ivonne Z. Jiménez-Velázquez, Ismael Santa-Maria, Giuseppe Tosto
Mol Psychiatry. Author manuscript; available in PMC 2022 Oct 1.
Published in final edited form as: Mol Psychiatry. 2022 Jun; 27(6): 2813–2820. Published online 2022 Apr 1. doi: 10.1038/s41380-022-01526-6
PMCID:
PMC9167722
AbstractArticlePDF–1.1M
6.
Wolbachia and Virus Alter the Host Transcriptome at the Interface of Nucleotide Metabolism Pathways
Amelia R. I. Lindsey, Tamanash Bhattacharya, Richard W. Hardy, Irene L. G. Newton
mBio. 2021 Jan-Feb; 12(1): e03472-20. Published online 2021 Feb 9. doi: 10.1128/mBio.03472-20
PMCID:
PMC7885120
AbstractArticlePDF–3.5M
7.
CRISPR-based modular assembly of a UAS-cDNA/ORF plasmid library for more than 5500 Drosophila genes conserved in humans
Ping Wei, Wen Xue, Yun Zhao, Guang Ning, Jiwu Wang
Genome Res. 2020 Jan; 30(1): 95–106. doi: 10.1101/gr.250811.119
PMCID:
PMC6961578
AbstractArticlePDF–3.6M
8.
Serine metabolism in the brain regulates starvation-induced sleep suppression in Drosophila melanogaster
Jun Young Sonn, Jongbin Lee, Min Kyung Sung, Hwajung Ri, Jung Kyoon Choi, Chunghun Lim, Joonho Choe
Proc Natl Acad Sci U S A. 2018 Jul 3; 115(27): 7129–7134. Published online 2018 Jun 18. doi: 10.1073/pnas.1719033115
PMCID:
PMC6142195
AbstractArticlePDF–1.3M
9.
An RNAi-mediated screen identifies novel targets for next-generation antiepileptic drugs based on increased expression of the homeostatic regulator pumilio
Wei-Hsiang Lin, Miaomiao He, Yuen Ngan Fan, Richard A. Baines
J Neurogenet. 2018; 32(2): 106–117. Published online 2018 May 2. doi: 10.1080/01677063.2018.1465570
PMCID:
PMC5989157
AbstractArticlePDF–1.5M
10.
The impact of genome variation and diet on the metabolic phenotype and microbiome composition of Drosophila melanogaster
Lisa Jehrke, Fiona A. Stewart, Andrea Droste, Mathias Beller
Sci Rep. 2018; 8: 6215. Published online 2018 Apr 18. doi: 10.1038/s41598-018-24542-5
PMCID:
PMC5906449
AbstractArticlePDF–4.5M
11.
Landscape and evolution of tissue-specific alternative polyadenylation across Drosophila species
Piero Sanfilippo, Jiayu Wen, Eric C. Lai
Genome Biol. 2017; 18: 229. Published online 2017 Nov 30. doi: 10.1186/s13059-017-1358-0
PMCID:
PMC5707805
AbstractArticlePDF–3.2M
12.
Transcription elongation rate has a tissue-specific impact on alternative cleavage and polyadenylation in Drosophila melanogaster
Xiaochuan Liu, Jaime Freitas, Dinghai Zheng, Marta S. Oliveira, Mainul Hoque, Torcato Martins, Telmo Henriques, Bin Tian, Alexandra Moreira
RNA. 2017 Dec; 23(12): 1807–1816. doi: 10.1261/rna.062661.117
PMCID:
PMC5689002
AbstractArticlePDF–4.0M
13.
mRNA-Associated Processes and Their Influence on Exon-Intron Structure in Drosophila melanogaster
Gildas Lepennetier, Francesco Catania
G3 (Bethesda) 2016 Jun; 6(6): 1617–1626. Published online 2016 Mar 28. doi: 10.1534/g3.116.029231
PMCID:
PMC4889658
AbstractArticlePDF–1.5M
14.
Sir2 Acts through Hepatocyte Nuclear Factor 4 to maintain insulin Signaling and Metabolic Homeostasis in Drosophila
Rebecca A. S. Palu, Carl S. Thummel
PLoS Genet. 2016 Apr; 12(4): e1005978. Published online 2016 Apr 8. doi: 10.1371/journal.pgen.1005978
PMCID:
PMC4825955
AbstractArticlePDF–1.8M
15.
Comparison of inter- and intraspecies variation in humans and fruit flies
Juliann Shih, Russ Hodge, Miguel A. Andrade-Navarro
Genom Data. 2015 Mar; 3: 49–54. Published online 2014 Nov 22. doi: 10.1016/j.gdata.2014.11.010
PMCID:
PMC4536057
AbstractArticlePDF–695K
16.
Gene Model Annotations for Drosophila melanogaster: The Rule-Benders
Madeline A. Crosby, L. Sian Gramates, Gilberto dos Santos, Beverley B. Matthews, Susan E. St. Pierre, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, David B. Emmert, Susan M. Russo, William M. Gelbart, the FlyBase Consortium
G3 (Bethesda) 2015 Aug; 5(8): 1737–1749. Published online 2015 Jun 24. doi: 10.1534/g3.115.018937
PMCID:
PMC4528330
AbstractArticlePDF–2.2M
17.
Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data
Beverley B. Matthews, Gilberto dos Santos, Madeline A. Crosby, David B. Emmert, Susan E. St. Pierre, L. Sian Gramates, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, Victor Strelets, Susan M. Russo, William M. Gelbart, the FlyBase Consortium
G3 (Bethesda) 2015 Aug; 5(8): 1721–1736. Published online 2015 Jun 24. doi: 10.1534/g3.115.018929
PMCID:
PMC4528329
AbstractArticlePDF–4.9M
18.
The Release 6 reference sequence of the Drosophila melanogaster genome
Roger A. Hoskins, Joseph W. Carlson, Kenneth H. Wan, Soo Park, Ivonne Mendez, Samuel E. Galle, Benjamin W. Booth, Barret D. Pfeiffer, Reed A. George, Robert Svirskas, Martin Krzywinski, Jacqueline Schein, Maria Carmela Accardo, Elisabetta Damia, Giovanni Messina, María Méndez-Lago, Beatriz de Pablos, Olga V. Demakova, Evgeniya N. Andreyeva, Lidiya V. Boldyreva, Marco Marra, A. Bernardo Carvalho, Patrizio Dimitri, Alfredo Villasante, Igor F. Zhimulev, Gerald M. Rubin, Gary H. Karpen, Susan E. Celniker
Genome Res. 2015 Mar; 25(3): 445–458. doi: 10.1101/gr.185579.114
PMCID:
PMC4352887
AbstractArticlePDF–1022K
19.
High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression
Philippe Batut, Alexander Dobin, Charles Plessy, Piero Carninci, Thomas R. Gingeras
Genome Res. 2013 Jan; 23(1): 169–180. doi: 10.1101/gr.139618.112
PMCID:
PMC3530677
AbstractArticlePDF–1.5M
20.
The Many Landscapes of Recombination in Drosophila melanogaster
Josep M. Comeron, Ramesh Ratnappan, Samuel Bailin
PLoS Genet. 2012 Oct; 8(10): e1002905. Published online 2012 Oct 11. doi: 10.1371/journal.pgen.1002905
PMCID:
PMC3469467
AbstractArticlePDF–1.6M

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