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Items: 1 to 20 of 35

1.
Next-generation large-scale binary protein interaction network for Drosophila melanogaster
Hong-Wen Tang, Kerstin Spirohn, Yanhui Hu, Tong Hao, István A. Kovács, Yue Gao, Richard Binari, Donghui Yang-Zhou, Kenneth H. Wan, Joel S. Bader, Dawit Balcha, Wenting Bian, Benjamin W. Booth, Atina G. Coté, Steffi de Rouck, Alice Desbuleux, Kah Yong Goh, Dae-Kyum Kim, Jennifer J. Knapp, Wen Xing Lee, Irma Lemmens, Cathleen Li, Mian Li, Roujia Li, Hyobin Julianne Lim, Yifang Liu, Katja Luck, Dylan Markey, Carl Pollis, Sudharshan Rangarajan, Jonathan Rodiger, Sadie Schlabach, Yun Shen, Dayag Sheykhkarimli, Bridget TeeKing, Frederick P. Roth, Jan Tavernier, Michael A. Calderwood, David E. Hill, Susan E. Celniker, Marc Vidal, Norbert Perrimon, Stephanie E. Mohr
Nat Commun. 2023; 14: 2162. Published online 2023 Apr 15. doi: 10.1038/s41467-023-37876-0
PMCID:
PMC10105736
AbstractArticlePDF–3.2M
2.
Mechanisms of Interaction between Enhancers and Promoters in Three Drosophila Model Systems
Olga Kyrchanova, Vladimir Sokolov, Pavel Georgiev
Int J Mol Sci. 2023 Feb; 24(3): 2855. Published online 2023 Feb 2. doi: 10.3390/ijms24032855
PMCID:
PMC9917889
AbstractArticlePDF–2.2M
3.
Topological screen identifies hundreds of Cp190- and CTCF-dependent Drosophila chromatin insulator elements
Tatyana G. Kahn, Mikhail Savitsky, Chikuan Kuong, Caroline Jacquier, Giacomo Cavalli, Jia-Ming Chang, Yuri B. Schwartz
Sci Adv. 2023 Feb; 9(5): eade0090. Published online 2023 Feb 3. doi: 10.1126/sciadv.ade0090
PMCID:
PMC9897668
AbstractArticlePDF–1.6M
4.
Essential role of Cp190 in physical and regulatory boundary formation
Anjali Kaushal, Julien Dorier, Bihan Wang, Giriram Mohana, Michael Taschner, Pascal Cousin, Patrice Waridel, Christian Iseli, Anastasiia Semenova, Simon Restrepo, Nicolas Guex, Erez Lieberman Aiden, Maria Cristina Gambetta
Sci Adv. 2022 May; 8(19): eabl8834. Published online 2022 May 13. doi: 10.1126/sciadv.abl8834
PMCID:
PMC9106302
AbstractArticlePDF–8.3M
5.
Genome-wide phenotypic RNAi screen in the Drosophila wing: phenotypic description of functional classes
Ana López-Varea, Patricia Vega-Cuesta, Ana Ruiz-Gómez, Cristina M Ostalé, Cristina Molnar, Covadonga F Hevia, Mercedes Martín, Maria F Organista, Jesus de Celis, Joaquín Culí, Nuria Esteban, Jose F de Celis
G3 (Bethesda) 2021 Dec; 11(12): jkab349. Published online 2021 Oct 2. doi: 10.1093/g3journal/jkab349
PMCID:
PMC8664486
AbstractArticlePDF–3.1M
6.
The Functions and Mechanisms of Action of Insulators in the Genomes of Higher Eukaryotes
L. S. Melnikova, P. G. Georgiev, A. K. Golovnin
Acta Naturae. 2020 Oct-Dec; 12(4): 15–33. doi: 10.32607/actanaturae.11144
PMCID:
PMC7800606
AbstractArticlePDF–5.8M
7.
Insights into HP1a-Chromatin Interactions
Silvia Meyer-Nava, Victor E. Nieto-Caballero, Mario Zurita, Viviana Valadez-Graham
Cells. 2020 Aug; 9(8): 1866. Published online 2020 Aug 9. doi: 10.3390/cells9081866
PMCID:
PMC7465937
AbstractArticlePDF–2.2M
8.
In situ dissection of domain boundaries affect genome topology and gene transcription in Drosophila
Rodrigo G. Arzate-Mejía, Angel Josué Cerecedo-Castillo, Georgina Guerrero, Mayra Furlan-Magaril, Félix Recillas-Targa
Nat Commun. 2020; 11: 894. Published online 2020 Feb 14. doi: 10.1038/s41467-020-14651-z
PMCID:
PMC7021724
AbstractArticlePDF–3.6M
9.
TAD-free analysis of architectural proteins and insulators
Raphaël Mourad, Olivier Cuvier
Nucleic Acids Res. 2018 Mar 16; 46(5): e27. Published online 2017 Dec 19. doi: 10.1093/nar/gkx1246
PMCID:
PMC5861416
AbstractArticlePDF–3.5M
10.
Landscape and evolution of tissue-specific alternative polyadenylation across Drosophila species
Piero Sanfilippo, Jiayu Wen, Eric C. Lai
Genome Biol. 2017; 18: 229. Published online 2017 Nov 30. doi: 10.1186/s13059-017-1358-0
PMCID:
PMC5707805
AbstractArticlePDF–3.2M
11.
Transcription elongation rate has a tissue-specific impact on alternative cleavage and polyadenylation in Drosophila melanogaster
Xiaochuan Liu, Jaime Freitas, Dinghai Zheng, Marta S. Oliveira, Mainul Hoque, Torcato Martins, Telmo Henriques, Bin Tian, Alexandra Moreira
RNA. 2017 Dec; 23(12): 1807–1816. doi: 10.1261/rna.062661.117
PMCID:
PMC5689002
AbstractArticlePDF–4.0M
12.
Transcriptomic data from panarthropods shed new light on the evolution of insulator binding proteins in insects: Insect insulator proteins
Thomas Pauli, Lucia Vedder, Daniel Dowling, Malte Petersen, Karen Meusemann, Alexander Donath, Ralph S. Peters, Lars Podsiadlowski, Christoph Mayer, Shanlin Liu, Xin Zhou, Peter Heger, Thomas Wiehe, Lars Hering, Georg Mayer, Bernhard Misof, Oliver Niehuis
BMC Genomics. 2016; 17: 861. Published online 2016 Nov 3. doi: 10.1186/s12864-016-3205-1
PMCID:
PMC5094011
AbstractArticlePDF–1.0M
13.
Cold acclimation wholly reorganizes the Drosophila melanogaster transcriptome and metabolome
Heath A. MacMillan, Jose M. Knee, Alice B. Dennis, Hiroko Udaka, Katie E. Marshall, Thomas J. S. Merritt, Brent J. Sinclair
Sci Rep. 2016; 6: 28999. Published online 2016 Jun 30. doi: 10.1038/srep28999
PMCID:
PMC4928047
AbstractArticlePDF–3.1M
14.
Gene Model Annotations for Drosophila melanogaster: The Rule-Benders
Madeline A. Crosby, L. Sian Gramates, Gilberto dos Santos, Beverley B. Matthews, Susan E. St. Pierre, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, David B. Emmert, Susan M. Russo, William M. Gelbart, the FlyBase Consortium
G3 (Bethesda) 2015 Aug; 5(8): 1737–1749. Published online 2015 Jun 24. doi: 10.1534/g3.115.018937
PMCID:
PMC4528330
AbstractArticlePDF–2.2M
15.
Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data
Beverley B. Matthews, Gilberto dos Santos, Madeline A. Crosby, David B. Emmert, Susan E. St. Pierre, L. Sian Gramates, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, Victor Strelets, Susan M. Russo, William M. Gelbart, the FlyBase Consortium
G3 (Bethesda) 2015 Aug; 5(8): 1721–1736. Published online 2015 Jun 24. doi: 10.1534/g3.115.018929
PMCID:
PMC4528329
AbstractArticlePDF–4.9M
16.
Transcription Factor Networks in Drosophila melanogaster
David Y. Rhee, Dong-Yeon Cho, Bo Zhai, Matthew Slattery, Lijia Ma, Julian Mintseris, Christina Y. Wong, Kevin P. White, Susan E. Celniker, Teresa M. Przytycka, Steven P. Gygi, Robert A. Obar, Spyros Artavanis-Tsakonas
Cell Rep. Author manuscript; available in PMC 2015 Apr 20.
Published in final edited form as: Cell Rep. 2014 Sep 25; 8(6): 2031–2043. Published online 2014 Sep 18. doi: 10.1016/j.celrep.2014.08.038
PMCID:
PMC4403667
AbstractArticlePDF–1.3M
17.
The Release 6 reference sequence of the Drosophila melanogaster genome
Roger A. Hoskins, Joseph W. Carlson, Kenneth H. Wan, Soo Park, Ivonne Mendez, Samuel E. Galle, Benjamin W. Booth, Barret D. Pfeiffer, Reed A. George, Robert Svirskas, Martin Krzywinski, Jacqueline Schein, Maria Carmela Accardo, Elisabetta Damia, Giovanni Messina, María Méndez-Lago, Beatriz de Pablos, Olga V. Demakova, Evgeniya N. Andreyeva, Lidiya V. Boldyreva, Marco Marra, A. Bernardo Carvalho, Patrizio Dimitri, Alfredo Villasante, Igor F. Zhimulev, Gerald M. Rubin, Gary H. Karpen, Susan E. Celniker
Genome Res. 2015 Mar; 25(3): 445–458. doi: 10.1101/gr.185579.114
PMCID:
PMC4352887
AbstractArticlePDF–1022K
18.
Two new insulator proteins, Pita and ZIPIC, target CP190 to chromatin
Oksana Maksimenko, Marek Bartkuhn, Viacheslav Stakhov, Martin Herold, Nickolay Zolotarev, Theresa Jox, Melanie K. Buxa, Ramona Kirsch, Artem Bonchuk, Anna Fedotova, Olga Kyrchanova, Rainer Renkawitz, Pavel Georgiev
Genome Res. 2015 Jan; 25(1): 89–99. doi: 10.1101/gr.174169.114
PMCID:
PMC4317163
AbstractArticlePDF–1.2M
19.
Heterochromatin-associated interactions of Drosophila HP1a with dADD1, HIPP1, and repetitive RNAs
Artyom A. Alekseyenko, Andrey A. Gorchakov, Barry M. Zee, Stephen M. Fuchs, Peter V. Kharchenko, Mitzi I. Kuroda
Genes Dev. 2014 Jul 1; 28(13): 1445–1460. doi: 10.1101/gad.241950.114
PMCID:
PMC4083088
AbstractArticlePDF–2.4M
20.
Ibf1 and Ibf2 are novel CP190-interacting proteins required for insulator function
Sergi Cuartero, Ujué Fresán, Oscar Reina, Evarist Planet, M Lluisa Espinàs
EMBO J. 2014 Mar 18; 33(6): 637–647. Published online 2014 Feb 6. doi: 10.1002/embj.201386001
PMCID:
PMC3989656
AbstractArticlePDF–1.2M

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