PMC Links for GEO Profiles (Select 37930141) - PMC

Tim Pollex, Adam Rabinowitz, Maria Cristina Gambetta, Raquel Marco-Ferreres, Rebecca R. Viales, Aleksander Jankowski, Christoph Schaub, Eileen E. M. Furlong

Nat Genet. 2024; 56(4): 686–696. Published online 2024 Mar 11. doi: 10.1038/s41588-024-01678-x

PMCID:: PMC11018526

Abstract Article PDF–7.7M

Select item 106480814.

The N-Terminal Part of Drosophila CP190 Is a Platform for Interaction with Multiple Architectural Proteins

Anton Golovnin, Larisa Melnikova, Valentin Babosha, Galina V. Pokholkova, Ivan Slovohotov, Anastasia Umnova, Oksana Maksimenko, Igor F. Zhimulev, Pavel Georgiev

Int J Mol Sci. 2023 Nov; 24(21): 15917. Published online 2023 Nov 2. doi: 10.3390/ijms242115917

PMCID:: PMC10648081

Abstract Article PDF–5.5M

Select item 105904265.

3D chromatin interactions involving Drosophila insulators are infrequent but preferential and arise before TADs and transcription

Olivier Messina, Flavien Raynal, Julian Gurgo, Jean-Bernard Fiche, Vera Pancaldi, Marcelo Nollmann

Nat Commun. 2023; 14: 6678. Published online 2023 Oct 21. doi: 10.1038/s41467-023-42485-y

PMCID:: PMC10590426

Abstract Article PDF–3.6M

Select item 105738016.

The MADF-BESS Protein CP60 Is Recruited to Insulators via CP190 and Has Redundant Functions in Drosophila

Larisa Melnikova, Varvara Molodina, Valentin Babosha, Margarita Kostyuchenko, Pavel Georgiev, Anton Golovnin

Int J Mol Sci. 2023 Oct; 24(19): 15029. Published online 2023 Oct 9. doi: 10.3390/ijms241915029

PMCID:: PMC10573801

Abstract Article PDF–7.9M

Select item 103797757.

Polycomb Recruiters Inside and Outside of the Repressed Domains

Maksim Erokhin, Vladic Mogila, Dmitry Lomaev, Darya Chetverina

Int J Mol Sci. 2023 Jul; 24(14): 11394. Published online 2023 Jul 13. doi: 10.3390/ijms241411394

PMCID:: PMC10379775

Abstract Article PDF–3.2M

Select item 101794618.

Genome-Wide Expression Analysis of Long Noncoding RNAs and Their Target Genes in Metafemale Drosophila

Xinyu Liu, Ran Yan, Haosheng Liu, Shuai Zhang, Ruixue Wang, Bowen Zhang, Lin Sun

Int J Mol Sci. 2023 May; 24(9): 8381. Published online 2023 May 6. doi: 10.3390/ijms24098381

PMCID:: PMC10179461

Abstract Article PDF–8.2M

Select item 100789179.

A modERN resource: identification of Drosophila transcription factor candidate target genes using RNAi

William W Fisher, Ann S Hammonds, Richard Weiszmann, Benjamin W Booth, Louis Gevirtzman, Jaeda E J Patton, Connor A Kubo, Robert H Waterston, Susan E Celniker

Genetics. 2023 Apr; 223(4): iyad004. Published online 2023 Jan 19. doi: 10.1093/genetics/iyad004

PMCID:: PMC10078917

Abstract Article PDF–18M

Select item 1004021710.

Nucleoporins facilitate ORC loading onto chromatin

Logan Richards, Christopher L. Lord, Mary Lauren Benton, John A. Capra, Jared T. Nordman

Cell Rep. Author manuscript; available in PMC 2023 Mar 26.

Published in final edited form as: Cell Rep. 2022 Nov 8; 41(6): 111590. doi: 10.1016/j.celrep.2022.111590

PMCID:: PMC10040217

Abstract Article PDF–1.8M

Select item 991788911.

Mechanisms of Interaction between Enhancers and Promoters in Three Drosophila Model Systems

Olga Kyrchanova, Vladimir Sokolov, Pavel Georgiev

Int J Mol Sci. 2023 Feb; 24(3): 2855. Published online 2023 Feb 2. doi: 10.3390/ijms24032855

PMCID:: PMC9917889

Abstract Article PDF–2.2M

Select item 989766812.

Topological screen identifies hundreds of Cp190- and CTCF-dependent Drosophila chromatin insulator elements

Tatyana G. Kahn, Mikhail Savitsky, Chikuan Kuong, Caroline Jacquier, Giacomo Cavalli, Jia-Ming Chang, Yuri B. Schwartz

Sci Adv. 2023 Feb; 9(5): eade0090. Published online 2023 Feb 3. doi: 10.1126/sciadv.ade0090

PMCID:: PMC9897668

Abstract Article PDF–1.6M

Select item 975100813.

Mechanisms of enhancer-promoter communication and chromosomal architecture in mammals and Drosophila

Olga V. Kyrchanova, Oleg V. Bylino, Pavel G. Georgiev

Front Genet. 2022; 13: 1081088. Published online 2022 Dec 1. doi: 10.3389/fgene.2022.1081088

PMCID:: PMC9751008

Abstract Article PDF–975K

Select item 943430714.

Isha is a su(Hw) mRNA-binding protein required for gypsy insulator function

Indira Bag, Yang Chen, Karole D'Orazio, Prisma Lopez, Sabine Wenzel, Yuichiro Takagi, Elissa P Lei

G3 (Bethesda) 2022 Sep; 12(9): jkac152. Published online 2022 Jun 16. doi: 10.1093/g3journal/jkac152

PMCID:: PMC9434307

Abstract Article PDF–2.1M

Select item 937868015.

Temporally dynamic antagonism between transcription and chromatin compaction controls stochastic photoreceptor specification in the fly eye

Lukas Voortman, Caitlin Anderson, Elizabeth Urban, Rongxin Yuan, Sang Tran, Alexandra Neuhaus-Follini, Josh Derrick, Thomas Gregor, Robert J. Johnston, Jr.

Dev Cell. Author manuscript; available in PMC 2023 Aug 8.

Published in final edited form as: Dev Cell. 2022 Aug 8; 57(15): 1817–1832.e5. Published online 2022 Jul 13. doi: 10.1016/j.devcel.2022.06.016

PMCID:: PMC9378680

Abstract Article PDF–3.4M

Select item 937191516.

NURF301 contributes to gypsy chromatin insulator-mediated nuclear organization

Shue Chen, Leah F Rosin, Gianluca Pegoraro, Nellie Moshkovich, Patrick J Murphy, Guoyun Yu, Elissa P Lei

Nucleic Acids Res. 2022 Aug 12; 50(14): 7906–7924. Published online 2022 Jul 12. doi: 10.1093/nar/gkac600

PMCID:: PMC9371915

Abstract Article PDF–5.0M

Select item 929761017.

Drosophila insulator proteins exhibit in vivo liquid–liquid phase separation properties

Bright Amankwaa, Todd Schoborg, Mariano Labrador

Life Sci Alliance. 2022 Dec; 5(12): e202201536. Published online 2022 Jul 19. doi: 10.26508/lsa.202201536

PMCID:: PMC9297610

Abstract Article PDF–3.4M

Select item 910630218.

Essential role of Cp190 in physical and regulatory boundary formation

Anjali Kaushal, Julien Dorier, Bihan Wang, Giriram Mohana, Michael Taschner, Pascal Cousin, Patrice Waridel, Christian Iseli, Anastasiia Semenova, Simon Restrepo, Nicolas Guex, Erez Lieberman Aiden, Maria Cristina Gambetta

Sci Adv. 2022 May; 8(19): eabl8834. Published online 2022 May 13. doi: 10.1126/sciadv.abl8834

PMCID:: PMC9106302

Abstract Article PDF–8.3M

Select item 881529719.

GAGA factor: a multifunctional pioneering chromatin protein

Darya Chetverina, Maksim Erokhin, Paul Schedl

Cell Mol Life Sci. 2021 May; 78(9): 4125–4141. Published online 2021 Feb 2. doi: 10.1007/s00018-021-03776-z

PMCID:: PMC8815297

Abstract Article PDF–3.5M

Select item 861824520.

Mechanisms of CP190 Interaction with Architectural Proteins in Drosophila Melanogaster

Marat Sabirov, Anastasia Popovich, Konstantin Boyko, Alena Nikolaeva, Olga Kyrchanova, Oksana Maksimenko, Vladimir Popov, Pavel Georgiev, Artem Bonchuk

Int J Mol Sci. 2021 Nov; 22(22): 12400. Published online 2021 Nov 17. doi: 10.3390/ijms222212400