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Items: 1 to 20 of 35

1.
Endogenous transcripts direct microRNA degradation in Drosophila, and this targeted degradation is required for proper embryonic development
Elena R. Kingston, Lianne W. Blodgett, David P. Bartel
Mol Cell. Author manuscript; available in PMC 2023 Oct 20.
Published in final edited form as: Mol Cell. 2022 Oct 20; 82(20): 3872–3884.e9. Published online 2022 Sep 22. doi: 10.1016/j.molcel.2022.08.029
PMCID:
PMC9648618
AbstractArticlePDF–1.8M
2.
DNA polymerase theta suppresses mitotic crossing over
Juan Carvajal-Garcia, K. Nicole Crown, Dale A. Ramsden, Jeff Sekelsky
PLoS Genet. 2021 Mar; 17(3): e1009267. Published online 2021 Mar 22. doi: 10.1371/journal.pgen.1009267
PMCID:
PMC8016270
AbstractArticlePDF–2.0M
3.
CRISPR-based modular assembly of a UAS-cDNA/ORF plasmid library for more than 5500 Drosophila genes conserved in humans
Ping Wei, Wen Xue, Yun Zhao, Guang Ning, Jiwu Wang
Genome Res. 2020 Jan; 30(1): 95–106. doi: 10.1101/gr.250811.119
PMCID:
PMC6961578
AbstractArticlePDF–3.6M
4.
The Drosophila melanogaster PIF1 Helicase Promotes Survival During Replication Stress and Processive DNA Synthesis During Double-Strand Gap Repair
Ece Kocak, Sarah Dykstra, Alexandra Nemeth, Catherine G. Coughlin, Kasey Rodgers, Mitch McVey
Genetics. 2019 Nov; 213(3): 835–847. Published online 2019 Sep 19. doi: 10.1534/genetics.119.302665
PMCID:
PMC6827366
AbstractArticlePDF–1.2M
5.
Landscape and evolution of tissue-specific alternative polyadenylation across Drosophila species
Piero Sanfilippo, Jiayu Wen, Eric C. Lai
Genome Biol. 2017; 18: 229. Published online 2017 Nov 30. doi: 10.1186/s13059-017-1358-0
PMCID:
PMC5707805
AbstractArticlePDF–3.2M
6.
Transcription elongation rate has a tissue-specific impact on alternative cleavage and polyadenylation in Drosophila melanogaster
Xiaochuan Liu, Jaime Freitas, Dinghai Zheng, Marta S. Oliveira, Mainul Hoque, Torcato Martins, Telmo Henriques, Bin Tian, Alexandra Moreira
RNA. 2017 Dec; 23(12): 1807–1816. doi: 10.1261/rna.062661.117
PMCID:
PMC5689002
AbstractArticlePDF–4.0M
7.
Substrate preference of Gen endonucleases highlights the importance of branched structures as DNA damage repair intermediates
Stephanie P. Bellendir, Danielle J. Rognstad, Lydia P. Morris, Grzegorz Zapotoczny, William G. Walton, Matthew R. Redinbo, Dale A. Ramsden, Jeff Sekelsky, Dorothy A. Erie
Nucleic Acids Res. 2017 May 19; 45(9): 5333–5348. Published online 2017 Mar 28. doi: 10.1093/nar/gkx214
PMCID:
PMC5435919
AbstractArticlePDF–4.7M
8.
DNA Repair in Drosophila: Mutagens, Models, and Missing Genes
Jeff Sekelsky
Genetics. 2017 Feb; 205(2): 471–490. Published online 2017 Jan 31. doi: 10.1534/genetics.116.186759
PMCID:
PMC5289830
AbstractArticlePDF–891K
9.
The Genomic Basis of Postponed Senescence in Drosophila melanogaster
Megan Ulmer Carnes, Terry Campbell, Wen Huang, Daniel G. Butler, Mary Anna Carbone, Laura H. Duncan, Sasha V. Harbajan, Edward M. King, Kara R. Peterson, Alexander Weitzel, Shanshan Zhou, Trudy F. C. Mackay
PLoS One. 2015; 10(9): e0138569. Published online 2015 Sep 17. doi: 10.1371/journal.pone.0138569
PMCID:
PMC4574564
AbstractArticlePDF–1.5M
10.
Gene Model Annotations for Drosophila melanogaster: The Rule-Benders
Madeline A. Crosby, L. Sian Gramates, Gilberto dos Santos, Beverley B. Matthews, Susan E. St. Pierre, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, David B. Emmert, Susan M. Russo, William M. Gelbart, the FlyBase Consortium
G3 (Bethesda) 2015 Aug; 5(8): 1737–1749. Published online 2015 Jun 24. doi: 10.1534/g3.115.018937
PMCID:
PMC4528330
AbstractArticlePDF–2.2M
11.
Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data
Beverley B. Matthews, Gilberto dos Santos, Madeline A. Crosby, David B. Emmert, Susan E. St. Pierre, L. Sian Gramates, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, Victor Strelets, Susan M. Russo, William M. Gelbart, the FlyBase Consortium
G3 (Bethesda) 2015 Aug; 5(8): 1721–1736. Published online 2015 Jun 24. doi: 10.1534/g3.115.018929
PMCID:
PMC4528329
AbstractArticlePDF–4.9M
12.
The Release 6 reference sequence of the Drosophila melanogaster genome
Roger A. Hoskins, Joseph W. Carlson, Kenneth H. Wan, Soo Park, Ivonne Mendez, Samuel E. Galle, Benjamin W. Booth, Barret D. Pfeiffer, Reed A. George, Robert Svirskas, Martin Krzywinski, Jacqueline Schein, Maria Carmela Accardo, Elisabetta Damia, Giovanni Messina, María Méndez-Lago, Beatriz de Pablos, Olga V. Demakova, Evgeniya N. Andreyeva, Lidiya V. Boldyreva, Marco Marra, A. Bernardo Carvalho, Patrizio Dimitri, Alfredo Villasante, Igor F. Zhimulev, Gerald M. Rubin, Gary H. Karpen, Susan E. Celniker
Genome Res. 2015 Mar; 25(3): 445–458. doi: 10.1101/gr.185579.114
PMCID:
PMC4352887
AbstractArticlePDF–1022K
13.
Phylostratigraphic Bias Creates Spurious Patterns of Genome Evolution
Bryan A. Moyers, Jianzhi Zhang
Mol Biol Evol. 2015 Jan 1; 32(1): 258–267. Published online 2014 Oct 13. doi: 10.1093/molbev/msu286
Correction in:
Mol Biol Evol. 2016 Nov; 33(11): 3031.
PMCID:
PMC4271527
AbstractArticlePDF–618K
14.
Drosophila FANCM Helicase Prevents Spontaneous Mitotic Crossovers Generated by the MUS81 and SLX1 Nucleases
H. Kenny Kuo, Susan McMahan, Christopher M. Rota, Kathryn P. Kohl, Jeff Sekelsky
Genetics. 2014 Nov; 198(3): 935–945. Published online 2014 Sep 8. doi: 10.1534/genetics.114.168096
PMCID:
PMC4224181
AbstractArticlePDF–1.0M
15.
The Drosophila Werner Exonuclease Participates in an Exonuclease-Independent Response to Replication Stress
Elyse Bolterstein, Rachel Rivero, Melissa Marquez, Mitch McVey
Genetics. 2014 Jun; 197(2): 643–652. Published online 2014 Apr 7. doi: 10.1534/genetics.114.164228
PMCID:
PMC4063921
AbstractArticlePDF–1.0M
16.
PGRP-SC2 promotes gut immune homeostasis to limit commensal dysbiosis and extend lifespan
Linlin Guo, Jason Karpac, Susan L. Tran, Heinrich Jasper
Cell. Author manuscript; available in PMC 2015 Jan 16.
Published in final edited form as: Cell. 2014 Jan 16; 156(0): 109–122. doi: 10.1016/j.cell.2013.12.018
PMCID:
PMC3928474
AbstractArticlePDF–4.7M
17.
High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression
Philippe Batut, Alexander Dobin, Charles Plessy, Piero Carninci, Thomas R. Gingeras
Genome Res. 2013 Jan; 23(1): 169–180. doi: 10.1101/gr.139618.112
PMCID:
PMC3530677
AbstractArticlePDF–1.5M
18.
A Genome-Wide RNAi Screen Identifies Core Components of the G2-M DNA Damage Checkpoint
Shu Kondo, Norbert Perrimon
Sci Signal. Author manuscript; available in PMC 2012 Nov 5.
Published in final edited form as: Sci Signal. 2011 Jan 4; 4(154): rs1. Published online 2011 Jan 4. doi: 10.1126/scisignal.2001350
PMCID:
PMC3489265
AbstractArticlePDF–2.0M
19.
The Many Landscapes of Recombination in Drosophila melanogaster
Josep M. Comeron, Ramesh Ratnappan, Samuel Bailin
PLoS Genet. 2012 Oct; 8(10): e1002905. Published online 2012 Oct 11. doi: 10.1371/journal.pgen.1002905
PMCID:
PMC3469467
AbstractArticlePDF–1.6M
20.
Genome-wide analysis of the maternal-to-zygotic transition in Drosophila primordial germ cells
Najeeb U Siddiqui, Xiao Li, Hua Luo, Angelo Karaiskakis, Huayun Hou, Thomas Kislinger, J Timothy Westwood, Quaid Morris, Howard D Lipshitz
Genome Biol. 2012; 13(2): R11. Published online 2012 Feb 20. doi: 10.1186/gb-2012-13-2-r11
PMCID:
PMC3334568
AbstractArticlePDF–22M

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