PMC Links for GEO Profiles (Select 3854420) - PMC

Isaque J. S. de Faria, Eric R. G. R. Aguiar, Roenick P. Olmo, Juliana Alves da Silva, Laurent Daeffler, Richard W. Carthew, Jean-Luc Imler, João T. Marques

Cell Rep. Author manuscript; available in PMC 2023 Mar 27.

Published in final edited form as: Cell Rep. 2022 Jun 21; 39(12): 110976. doi: 10.1016/j.celrep.2022.110976

PMCID:: PMC10041815

Abstract Article PDF–2.5M

Select item 86644864.

Genome-wide phenotypic RNAi screen in the Drosophila wing: phenotypic description of functional classes

Ana López-Varea, Patricia Vega-Cuesta, Ana Ruiz-Gómez, Cristina M Ostalé, Cristina Molnar, Covadonga F Hevia, Mercedes Martín, Maria F Organista, Jesus de Celis, Joaquín Culí, Nuria Esteban, Jose F de Celis

G3 (Bethesda) 2021 Dec; 11(12): jkab349. Published online 2021 Oct 2. doi: 10.1093/g3journal/jkab349

PMCID:: PMC8664486

Abstract Article PDF–3.1M

Select item 77042585.

In silico identification of Drosophila melanogaster genes encoding RNA polymerase subunits

Steven J Marygold, Nazif Alic, David S Gilmour, Savraj S Grewal

MicroPubl Biol. 2020; 2020: 10.17912/micropub.biology.000320. Published online 2020 Oct 20. doi: 10.17912/micropub.biology.000320

PMCID:: PMC7704258

Article PDF–416K

Select item 76724716.

Alignment and quantification of ChIP-exo crosslinking patterns reveal the spatial organization of protein–DNA complexes

Naomi Yamada, Matthew J Rossi, Nina Farrell, B Franklin Pugh, Shaun Mahony

Nucleic Acids Res. 2020 Nov 18; 48(20): 11215–11226. Published online 2020 Aug 4. doi: 10.1093/nar/gkaa618

PMCID:: PMC7672471

Abstract Article PDF–4.0M

Select item 72442617.

Chromatin-based reprogramming of a courtship regulator by concurrent pheromone perception and hormone signaling

Songhui Zhao, Bryson Deanhardt, George Thomas Barlow, Paulina Guerra Schleske, Anthony M. Rossi, Pelin C. Volkan

Sci Adv. 2020 May; 6(21): eaba6913. Published online 2020 May 22. doi: 10.1126/sciadv.aba6913

PMCID:: PMC7244261

Abstract Article PDF–647K

Select item 57078058.

Landscape and evolution of tissue-specific alternative polyadenylation across Drosophila species

Piero Sanfilippo, Jiayu Wen, Eric C. Lai

Genome Biol. 2017; 18: 229. Published online 2017 Nov 30. doi: 10.1186/s13059-017-1358-0

PMCID:: PMC5707805

Abstract Article PDF–3.2M

Select item 56890029.

Transcription elongation rate has a tissue-specific impact on alternative cleavage and polyadenylation in Drosophila melanogaster

Xiaochuan Liu, Jaime Freitas, Dinghai Zheng, Marta S. Oliveira, Mainul Hoque, Torcato Martins, Telmo Henriques, Bin Tian, Alexandra Moreira

RNA. 2017 Dec; 23(12): 1807–1816. doi: 10.1261/rna.062661.117

PMCID:: PMC5689002

Abstract Article PDF–4.0M

Select item 541689110.

Deciphering the DNA code for the function of the Drosophila polydactyl zinc finger protein Suppressor of Hairy-wing

Ryan M. Baxley, James D. Bullard, Michael W. Klein, Ashley G. Fell, Joel A. Morales-Rosado, Tingting Duan, Pamela K. Geyer

Nucleic Acids Res. 2017 May 5; 45(8): 4463–4478. Published online 2017 Feb 1. doi: 10.1093/nar/gkx040

PMCID:: PMC5416891

Abstract Article PDF–3.1M

Select item 473800511.

Proteome-wide dataset supporting the study of ancient metazoan macromolecular complexes

Sadhna Phanse, Cuihong Wan, Blake Borgeson, Fan Tu, Kevin Drew, Greg Clark, Xuejian Xiong, Olga Kagan, Julian Kwan, Alexandr Bezginov, Kyle Chessman, Swati Pal, Graham Cromar, Ophelia Papoulas, Zuyao Ni, Daniel R. Boutz, Snejana Stoilova, Pierre C. Havugimana, Xinghua Guo, Ramy H. Malty, Mihail Sarov, Jack Greenblatt, Mohan Babu, W. Brent Derry, Elisabeth R. Tillier, John B. Wallingford, John Parkinson, Edward M. Marcotte, Andrew Emili

Data Brief. 2016 Mar; 6: 715–721. Published online 2015 Dec 12. doi: 10.1016/j.dib.2015.11.062

PMCID:: PMC4738005

Abstract Article PDF–205K

Select item 454709512.

Genome-wide errant targeting by Hairy

Kurtulus Kok, Ahmet Ay, Li M Li, David N Arnosti

eLife. 2015; 4: e06394. Published online 2015 Aug 25. doi: 10.7554/eLife.06394

PMCID:: PMC4547095

Abstract Article PDF–3.6M

Select item 452833013.

Gene Model Annotations for Drosophila melanogaster: The Rule-Benders

Madeline A. Crosby, L. Sian Gramates, Gilberto dos Santos, Beverley B. Matthews, Susan E. St. Pierre, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, David B. Emmert, Susan M. Russo, William M. Gelbart, the FlyBase Consortium

G3 (Bethesda) 2015 Aug; 5(8): 1737–1749. Published online 2015 Jun 24. doi: 10.1534/g3.115.018937

PMCID:: PMC4528330

Abstract Article PDF–2.2M

Select item 452832914.

Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data

Beverley B. Matthews, Gilberto dos Santos, Madeline A. Crosby, David B. Emmert, Susan E. St. Pierre, L. Sian Gramates, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, Victor Strelets, Susan M. Russo, William M. Gelbart, the FlyBase Consortium

G3 (Bethesda) 2015 Aug; 5(8): 1721–1736. Published online 2015 Jun 24. doi: 10.1534/g3.115.018929

PMCID:: PMC4528329

Abstract Article PDF–4.9M

Select item 449217515.

Probing long-range interactions by extracting free energies from genome-wide chromosome conformation capture data

Saeed Saberi, Pau Farré, Olivier Cuvier, Eldon Emberly

BMC Bioinformatics. 2015; 16: 171. Published online 2015 May 23. doi: 10.1186/s12859-015-0584-2

PMCID:: PMC4492175

Abstract Article PDF–3.7M

Select item 439805016.

The Genetic Basis for Variation in Olfactory Behavior in Drosophila melanogaster

Gunjan H. Arya, Michael M. Magwire, Wen Huang, Yazmin L. Serrano-Negron, Trudy F.C. Mackay, Robert R.H. Anholt

Chem Senses. 2015 May; 40(4): 233–243. Published online 2015 Feb 15. doi: 10.1093/chemse/bjv001

PMCID:: PMC4398050

Abstract Article PDF–8.9M

Select item 435964017.

Zygotic Genome Activation Triggers the DNA Replication Checkpoint at the Midblastula Transition

Shelby A. Blythe, Eric F. Wieschaus

Cell. Author manuscript; available in PMC 2016 Mar 12.

Published in final edited form as: Cell. 2015 Mar 12; 160(6): 1169–1181. Published online 2015 Mar 5. doi: 10.1016/j.cell.2015.01.050

PMCID:: PMC4359640

Abstract Article PDF–2.4M

Select item 435288718.

The Release 6 reference sequence of the Drosophila melanogaster genome

Roger A. Hoskins, Joseph W. Carlson, Kenneth H. Wan, Soo Park, Ivonne Mendez, Samuel E. Galle, Benjamin W. Booth, Barret D. Pfeiffer, Reed A. George, Robert Svirskas, Martin Krzywinski, Jacqueline Schein, Maria Carmela Accardo, Elisabetta Damia, Giovanni Messina, María Méndez-Lago, Beatriz de Pablos, Olga V. Demakova, Evgeniya N. Andreyeva, Lidiya V. Boldyreva, Marco Marra, A. Bernardo Carvalho, Patrizio Dimitri, Alfredo Villasante, Igor F. Zhimulev, Gerald M. Rubin, Gary H. Karpen, Susan E. Celniker

Genome Res. 2015 Mar; 25(3): 445–458. doi: 10.1101/gr.185579.114

PMCID:: PMC4352887

Abstract Article PDF–1022K

Select item 427152719.

Phylostratigraphic Bias Creates Spurious Patterns of Genome Evolution

Bryan A. Moyers, Jianzhi Zhang

Mol Biol Evol. 2015 Jan 1; 32(1): 258–267. Published online 2014 Oct 13. doi: 10.1093/molbev/msu286

Correction in:: Mol Biol Evol. 2016 Nov; 33(11): 3031.

PMCID:: PMC4271527

Abstract Article PDF–618K

Select item 389440920.

Kinetics of promoter Pol II on Hsp70 reveal stable pausing and key insights into its regulation

Martin S. Buckley, Hojoong Kwak, Warren R. Zipfel, John T. Lis

Genes Dev. 2014 Jan 1; 28(1): 14–19. doi: 10.1101/gad.231886.113

PMCID:: PMC3894409

Abstract Article PDF–1.0M

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