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Select item 108724771.

Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle

Michael J. O’Brien, Athar Ansari

Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.

Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968

PMCID:: PMC10872477

Abstract Article PDF–1.7M

Select item 107001382.

The social and structural architecture of the yeast protein interactome

André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann

Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5

PMCID:: PMC10700138

Abstract Article PDF–20M

Select item 102086453.

Mitochondrial protein import clogging as a mechanism of disease

Liam P Coyne, Xiaowen Wang, Jiyao Song, Ebbing de Jong, Karin Schneider, Paul T Massa, Frank A Middleton, Thomas Becker, Xin Jie Chen

eLife. 2023; 12: e84330. Published online 2023 May 2. doi: 10.7554/eLife.84330

PMCID:: PMC10208645

Abstract Article PDF–12M

Select item 92098114.

New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224

PMCID:: PMC9209811

Abstract Article PDF–818K

Select item 84825125.

Aim32 is a dual-localized 2Fe-2S mitochondrial protein that functions in redox quality control

Danyun Zhang, Owen R. Dailey, Daniel J. Simon, Kamilah Roca-Datzer, Yasaman Jami-Alahmadi, Mikayla S. Hennen, James A. Wohlschlegel, Carla M. Koehler, Deepa V. Dabir

J Biol Chem. 2021 Oct; 297(4): 101135. Published online 2021 Aug 28. doi: 10.1016/j.jbc.2021.101135

PMCID:: PMC8482512

Abstract Article PDF–5.0M

Select item 80271786.

Structure of the mitochondrial TIM22 complex from yeast

Yutong Zhang, Xiaomin Ou, Xuezheng Wang, Dongjie Sun, Xueyin Zhou, Xiaofei Wu, Qing Li, Long Li

Cell Res. 2021 Mar; 31(3): 366–368. Published online 2020 Sep 11. doi: 10.1038/s41422-020-00399-0

PMCID:: PMC8027178

Article PDF–1.1M

Select item 59225287.

Global analysis of genetic circuitry and adaptive mechanisms enabling resistance to the azole antifungal drugs

Harley O’Connor Mount, Nicole M. Revie, Robert T. Todd, Kaitlin Anstett, Cathy Collins, Michael Costanzo, Charles Boone, Nicole Robbins, Anna Selmecki, Leah E. Cowen

PLoS Genet. 2018 Apr; 14(4): e1007319. Published online 2018 Apr 27. doi: 10.1371/journal.pgen.1007319

PMCID:: PMC5922528

Abstract Article PDF–7.1M

Select item 57653598.

Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4

Jason E. Miller, Liye Zhang, Haoyang Jiang, Yunfei Li, B. Franklin Pugh, Joseph C. Reese

G3 (Bethesda) 2018 Jan; 8(1): 315–330. Published online 2017 Nov 20. doi: 10.1534/g3.117.300415

PMCID:: PMC5765359

Abstract Article PDF–2.2M

Select item 56659779.

INA complex liaises the F₁F_o-ATP synthase membrane motor modules

Nataliia Naumenko, Marcel Morgenstern, Robert Rucktäschel, Bettina Warscheid, Peter Rehling

Nat Commun. 2017; 8: 1237. Published online 2017 Nov 1. doi: 10.1038/s41467-017-01437-z

PMCID:: PMC5665977

Abstract Article PDF–1.9M

Select item 566188510.

A global interaction network maps a wiring diagram of cellular function

Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone

Science. Author manuscript; available in PMC 2017 Oct 30.

Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420

PMCID:: PMC5661885

Abstract Article PDF–2.6M

Select item 551207011.

Integrative proteomics and biochemical analyses define Ptc6p as the Saccharomyces cerevisiae pyruvate dehydrogenase phosphatase

Xiao Guo, Natalie M. Niemi, Joshua J. Coon, David J. Pagliarini

J Biol Chem. 2017 Jul 14; 292(28): 11751–11759. Published online 2017 May 24. doi: 10.1074/jbc.M117.787341

PMCID:: PMC5512070

Abstract Article PDF–2.1M

Select item 500924712.

Phosphatidylcholine Affects Inner Membrane Protein Translocases of Mitochondria

Max-Hinderk Schuler, Francesca Di Bartolomeo, Christoph U. Mårtensson, Günther Daum, Thomas Becker

J Biol Chem. 2016 Sep 2; 291(36): 18718–18729. Published online 2016 Jul 11. doi: 10.1074/jbc.M116.722694

PMCID:: PMC5009247

Abstract Article PDF–2.3M

Select item 487517813.

Interactomic study on interaction between lipid droplets and mitochondria

Jing Pu, Cheol Woong Ha, Shuyan Zhang, Jong Pil Jung, Won-Ki Huh, Pingsheng Liu

Protein Cell. 2011 Jun; 2(6): 487–496. Published online 2011 Jul 12. doi: 10.1007/s13238-011-1061-y

PMCID:: PMC4875178

Abstract Article PDF–1.5M

Select item 461603914.

Integrated multi-omics analyses reveal the pleiotropic nature of the control of gene expression by Puf3p

Christopher J. Kershaw, Joseph L. Costello, David Talavera, William Rowe, Lydia M. Castelli, Paul F. G. Sims, Christopher M. Grant, Mark P. Ashe, Simon J. Hubbard, Graham D. Pavitt

Sci Rep. 2015; 5: 15518. Published online 2015 Oct 23. doi: 10.1038/srep15518

PMCID:: PMC4616039

Abstract Article PDF–2.2M

Select item 441686415.

Mitochondrial Heat Shock Protein (Hsp) 70 and Hsp10 Cooperate in the Formation of Hsp60 Complexes

Lena Böttinger, Silke Oeljeklaus, Bernard Guiard, Sabine Rospert, Bettina Warscheid, Thomas Becker

J Biol Chem. 2015 May 1; 290(18): 11611–11622. Published online 2015 Mar 18. doi: 10.1074/jbc.M115.642017

PMCID:: PMC4416864

Abstract Article PDF–3.4M

Select item 417536516.

The Mitochondrial ADP/ATP Carrier Associates with the Inner Membrane Presequence Translocase in a Stoichiometric Manner

Carola S. Mehnert, Heike Rampelt, Michael Gebert, Silke Oeljeklaus, Sandra G. Schrempp, Lioba Kochbeck, Bernard Guiard, Bettina Warscheid, Martin van der Laan

J Biol Chem. 2014 Sep 26; 289(39): 27352–27362. Published online 2014 Aug 14. doi: 10.1074/jbc.M114.556498