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Items: 1 to 20 of 96

1.
Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle
Michael J. O’Brien, Athar Ansari
Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.
Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968
PMCID:
PMC10872477
AbstractArticlePDF–1.7M
2.
The social and structural architecture of the yeast protein interactome
André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann
Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5
PMCID:
PMC10700138
AbstractArticlePDF–20M
3.
TRAPPIII requires Drs2 binding to transport Atg9 vesicles at cold temperatures
Marta Puig-Tintó, Irene Pazos, Laura Betancur, Altair C. Hernández, Oriol Gallego
Autophagy. 2023; 19(11): 3017–3018. Published online 2023 Jul 6. doi: 10.1080/15548627.2023.2233365
PMCID:
PMC10549185
AbstractArticlePDF–341K
4.
A systematic proximity ligation approach to studying protein‐substrate specificity identifies the substrate spectrum of the Ssh1 translocon
Nir Cohen, Naama Aviram, Maya Schuldiner
EMBO J. 2023 Jun; 42(11): e113385. Published online 2023 Apr 19. doi: 10.15252/embj.2022113385
PMCID:
PMC10233368
AbstractArticlePDF–1.2M
5.
The P4‐ATPase Drs2 interacts with and stabilizes the multisubunit tethering complex TRAPPIII in yeast
Irene Pazos, Marta Puig‐Tintó, Laura Betancur, Jorge Cordero, Nereida Jiménez‐Menéndez, Marc Abella, Altair C Hernández, Ana G Duran, Emi Adachi‐Fernández, Carla Belmonte‐Mateos, Susana Sabido‐Bozo, Sébastien Tosi, Akiko Nezu, Baldomero Oliva, Julien Colombelli, Todd R Graham, Tamotsu Yoshimori, Manuel Muñiz, Maho Hamasaki, Oriol Gallego
EMBO Rep. 2023 May; 24(5): e56134. Published online 2023 Mar 16. doi: 10.15252/embr.202256134
PMCID:
PMC10157312
AbstractArticlePDF–2.0M
6.
A balancing act: interactions within NuA4/TIP60 regulate picNuA4 function in Saccharomyces cerevisiae and humans
Phoebe Y T Lu, Alyssa C Kirlin, Maria J Aristizabal, Hilary T Brewis, Nancy Lévesque, Dheva T Setiaputra, Nikita Avvakumov, Joris J Benschop, Marian Groot Koerkamp, Frank C P Holstege, Nevan J Krogan, Calvin K Yip, Jacques Côté, Michael S Kobor
Genetics. 2022 Nov; 222(3): iyac136. Published online 2022 Sep 6. doi: 10.1093/genetics/iyac136
PMCID:
PMC9630986
AbstractArticlePDF–2.2M
7.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
8.
Tubulin isotypes optimize distinct spindle positioning mechanisms during yeast mitosis
Emmanuel T. Nsamba, Abesh Bera, Michael Costanzo, Charles Boone, Mohan L. Gupta, Jr.
J Cell Biol. 2021 Dec 6; 220(12): e202010155. Published online 2021 Nov 5. doi: 10.1083/jcb.202010155
PMCID:
PMC8576917
AbstractArticlePDF–7.4M
9.
Transport mechanism of P4 ATPase phosphatidylcholine flippases
Lin Bai, Qinglong You, Bhawik K Jain, H Diessel Duan, Amanda Kovach, Todd R Graham, Huilin Li
eLife. 2020; 9: e62163. Published online 2020 Dec 15. doi: 10.7554/eLife.62163
PMCID:
PMC7773333
AbstractArticlePDF–6.6M
10.
Comprehensive Synthetic Genetic Array Analysis of Alleles That Interact with Mutation of the Saccharomyces cerevisiae RecQ Helicases Hrq1 and Sgs1
Elsbeth Sanders, Phoebe A. Nguyen, Cody M. Rogers, Matthew L. Bochman
G3 (Bethesda) 2020 Dec; 10(12): 4359–4368. Published online 2020 Oct 28. doi: 10.1534/g3.120.401709
PMCID:
PMC7718751
AbstractArticlePDF–1.2M
11.
The lipid flippase Drs2 regulates anterograde transport of Atg9 during autophagy
Franziska Kriegenburg, Wouter Huiting, Fleur van Buuren-Broek, Emma Zwilling, Ralph Hardenberg, Muriel Mari, Claudine Kraft, Fulvio Reggiori
Autophagy Rep. Author manuscript; available in PMC 2023 Dec 15.
Published in final edited form as: Autophagy Rep. 2022 Aug 9; 1(1): 345–367. Published online 2022 Aug 9. doi: 10.1080/27694127.2022.2104781
PMCID:
PMC7615381
AbstractArticlePDF–1.5M
12.
Chaperone-Mediated Protein Disaggregation Triggers Proteolytic Clearance of Intra-nuclear Protein Inclusions
Fabian den Brave, Lucas V. Cairo, Chandhuru Jagadeesan, Carmen Ruger-Herreros, Axel Mogk, Bernd Bukau, Stefan Jentsch
Cell Rep. 2020 Jun 2; 31(9): 107680. Published online 2020 Jun 2. doi: 10.1016/j.celrep.2020.107680
PMCID:
PMC7273177
AbstractArticle
13.
Yeast synaptobrevin, Snc1, engages distinct routes of postendocytic recycling mediated by a sorting nexin, Rcy1-COPI, and retromer
Jordan T. Best, Peng Xu, Jack G. McGuire, Shannon N. Leahy, Todd R. Graham
Mol Biol Cell. 2020 Apr 15; 31(9): 944–962. doi: 10.1091/mbc.E19-05-0290
PMCID:
PMC7185969
AbstractArticlePDF–4.0M
14.
Conserved Mechanism of Phospholipid Substrate Recognition by the P4-ATPase Neo1 from Saccharomyces cerevisiae
Yannan Huang, Mehmet Takar, Jordan T. Best, Todd R. Graham
Biochim Biophys Acta Mol Cell Biol Lipids. Author manuscript; available in PMC 2021 Feb 1.
Published in final edited form as: Biochim Biophys Acta Mol Cell Biol Lipids. 2020 Feb; 1865(2): 158581. Published online 2019 Nov 28. doi: 10.1016/j.bbalip.2019.158581
PMCID:
PMC6957724
AbstractArticlePDF–1.6M
15.
Autoinhibition and activation mechanisms of the eukaryotic lipid flippase Drs2p-Cdc50p
Lin Bai, Amanda Kovach, Qinglong You, Hao-Chi Hsu, Gongpu Zhao, Huilin Li
Nat Commun. 2019; 10: 4142. Published online 2019 Sep 12. doi: 10.1038/s41467-019-12191-9
PMCID:
PMC6742660
AbstractArticlePDF–3.4M
16.
Action of Arl1 GTPase and golgin Imh1 in Ypt6-independent retrograde transport from endosomes to the trans-Golgi network
Yan-Ting Chen, I-Hao Wang, Yi-Hsun Wang, Wan-Yun Chiu, Jen-Hao Hu, Wen-Hui Chen, Fang-Jen S. Lee
Mol Biol Cell. 2019 Apr 1; 30(8): 1008–1019. doi: 10.1091/mbc.E18-09-0579
PMCID:
PMC6589904
AbstractArticlePDF–4.0M
17.
The PQ-loop protein Any1 segregates Drs2 and Neo1 functions required for viability and plasma membrane phospholipid asymmetry
Mehmet Takar, Yannan Huang, Todd R. Graham
J Lipid Res. 2019 May; 60(5): 1032–1042. Published online 2019 Mar 1. doi: 10.1194/jlr.M093526
PMCID:
PMC6495175
AbstractArticlePDF–1.8M
18.
Phospholipid flippases and Sfk1p, a novel regulator of phospholipid asymmetry, contribute to low permeability of the plasma membrane
Tetsuo Mioka, Konomi Fujimura-Kamada, Nahiro Mizugaki, Takuma Kishimoto, Takamitsu Sano, Hitoshi Nunome, David E. Williams, Raymond J. Andersen, Kazuma Tanaka
Mol Biol Cell. 2018 May 15; 29(10): 1203–1218. doi: 10.1091/mbc.E17-04-0217
PMCID:
PMC5935070
AbstractArticlePDF–2.7M
19.
Global analysis of genetic circuitry and adaptive mechanisms enabling resistance to the azole antifungal drugs
Harley O’Connor Mount, Nicole M. Revie, Robert T. Todd, Kaitlin Anstett, Cathy Collins, Michael Costanzo, Charles Boone, Nicole Robbins, Anna Selmecki, Leah E. Cowen
PLoS Genet. 2018 Apr; 14(4): e1007319. Published online 2018 Apr 27. doi: 10.1371/journal.pgen.1007319
PMCID:
PMC5922528
AbstractArticlePDF–7.1M
20.
A global interaction network maps a wiring diagram of cellular function
Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Oct 30.
Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420
PMCID:
PMC5661885
AbstractArticlePDF–2.6M

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