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Select item 108724771.

Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle

Michael J. O’Brien, Athar Ansari

Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.

Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968

PMCID:: PMC10872477

Abstract Article PDF–1.7M

Select item 107001382.

The social and structural architecture of the yeast protein interactome

André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann

Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5

PMCID:: PMC10700138

Abstract Article PDF–20M

Select item 102922103.

Nuclear pore complexes mediate subtelomeric gene silencing by regulating PCNA levels on chromatin

Sanjeev Kumar Choudhry, Maxwell L. Neal, Song Li, Arti T. Navare, Trevor Van Eeuwen, Richard W. Wozniak, Fred D. Mast, Michael P. Rout, John D. Aitchison

J Cell Biol. 2023 Sep 4; 222(9): e202207060. Published online 2023 Jun 26. doi: 10.1083/jcb.202207060

PMCID:: PMC10292210

Abstract Article PDF–5.9M

Select item 102333684.

A systematic proximity ligation approach to studying protein‐substrate specificity identifies the substrate spectrum of the Ssh1 translocon

Nir Cohen, Naama Aviram, Maya Schuldiner

EMBO J. 2023 Jun; 42(11): e113385. Published online 2023 Apr 19. doi: 10.15252/embj.2022113385

PMCID:: PMC10233368

Abstract Article PDF–1.2M

Select item 98363485.

A synthetic genetic array screen for interactions with the RNA helicase DED1 during cell stress in budding yeast

Sara B Carey, Hannah M List, Ashwin Siby, Paolo Guerra, Timothy A Bolger

G3 (Bethesda) 2023 Jan; 13(1): jkac296. Published online 2022 Nov 21. doi: 10.1093/g3journal/jkac296

PMCID:: PMC9836348

Abstract Article PDF–857K

Select item 98099426.

Vacuole fragmentation depends on a novel Atg18-containing retromer-complex

Lisa Marquardt, Matthew Taylor, Florian Kramer, Kerstin Schmitt, Gerhard H. Braus, Oliver Valerius, Michael Thumm

Autophagy. 2023; 19(1): 278–295. Published online 2022 May 15. doi: 10.1080/15548627.2022.2072656

PMCID:: PMC9809942

Abstract Article PDF–5.1M

Select item 96380287.

Yeast Smy2 and its human homologs GIGYF1 and -2 regulate Cdc48/VCP function during transcription stress

Michelle Harreman Lehner, Jane Walker, Kotryna Temcinaite, Anna Herlihy, Michael Taschner, Adam C. Berger, Anita H. Corbett, A. Barbara Dirac Svejstrup, Jesper Q. Svejstrup

Cell Rep. 2022 Oct 25; 41(4): 111536. Published online 2022 Oct 25. doi: 10.1016/j.celrep.2022.111536

PMCID:: PMC9638028

Abstract Article

Select item 92098118.

New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224

PMCID:: PMC9209811

Abstract Article PDF–818K

Select item 84550719.

Phosphatidylinositol 3,5-bisphosphate regulates Ca²⁺ transport during yeast vacuolar fusion through the Ca²⁺ ATPase Pmc1

Gregory E. Miner, Katherine D. Sullivan, Chi Zhang, David Rivera-Kohr, Annie Guo, Logan R. Hurst, Ez C. Ellis, Matthew L. Starr, Brandon C. Jones, Rutilio A. Fratti

Traffic. Author manuscript; available in PMC 2021 Sep 21.

Published in final edited form as: Traffic. 2020 Jul; 21(7): 503–517. doi: 10.1111/tra.12736

PMCID:: PMC8455071

Abstract Article PDF–1.8M

Select item 835352110.

Vacuolar H⁺-ATPase dysfunction rescues intralumenal vesicle cargo sorting in yeast lacking PI(3,5)P₂ or Doa4

Zachary N. Wilson, Dalton Buysse, Matt West, Daniel Ahrens, Greg Odorizzi

J Cell Sci. 2021 Aug 1; 134(15): jcs258459. Published online 2021 Aug 3. doi: 10.1242/jcs.258459

PMCID:: PMC8353521

Abstract Article

Select item 787948211.

Analysis of the TORC1 interactome reveals a spatially distinct function of TORC1 in mRNP complexes

Yeonji Chang, Gyubum Lim, Won-Ki Huh

J Cell Biol. 2021 Apr 5; 220(4): e201912060. Published online 2021 Feb 10. doi: 10.1083/jcb.201912060

PMCID:: PMC7879482

Abstract Article PDF–5.9M

Select item 752581512.

Roles for a lipid phosphatase in the activation of its opposing lipid kinase

Bethany S. Strunk, Noah Steinfeld, Sora Lee, Natsuko Jin, Cecilia Muñoz-Rivera, Garrison Meeks, Asha Thomas, Camille Akemann, Anna K. Mapp, Jason A. MacGurn, Lois S. Weisman

Mol Biol Cell. 2020 Aug 1; 31(17): 1835–1845. doi: 10.1091/mbc.E18-09-0556

PMCID:: PMC7525815

Abstract Article PDF–3.5M

Select item 751569413.

RNA-binding and prion domains: the Yin and Yang of phase separation

Nieves Lorenzo Gotor, Alexandros Armaos, Giulia Calloni, Marc Torrent Burgas, R Martin Vabulas, Natalia Sanchez De Groot, Gian Gaetano Tartaglia

Nucleic Acids Res. 2020 Sep 25; 48(17): 9491–9504. Published online 2020 Aug 28. doi: 10.1093/nar/gkaa681

PMCID:: PMC7515694

Abstract Article PDF–3.1M

Select item 658956114.

Phosphatidylinositol 3,5-bisphosphate regulates the transition between trans-SNARE complex formation and vacuole membrane fusion

Gregory E. Miner, Katherine D. Sullivan, Annie Guo, Brandon C. Jones, Logan R. Hurst, Ez C. Ellis, Matthew L. Starr, Rutilio A. Fratti

Mol Biol Cell. 2019 Jan 15; 30(2): 201–208. doi: 10.1091/mbc.E18-08-0505

PMCID:: PMC6589561

Abstract Article PDF–2.8M

Select item 629136615.

The cellular economy of the Saccharomyces cerevisiae zinc proteome

Yirong Wang, Erin Weisenhorn, Colin MacDiarmid, Claudia Andreini, Michael Bucci, Janet Taggart, Lucia Banci, Jason Russell, Joshua J. Coon, David J. Eide

Metallomics. Author manuscript; available in PMC 2019 Dec 12.

Published in final edited form as: Metallomics. 2018 Dec 12; 10(12): 1755–1776. doi: 10.1039/c8mt00269j

PMCID:: PMC6291366

Abstract Article PDF–3.0M

Select item 608071216.

PI(3,5)P₂ controls vacuole potassium transport to support cellular osmoregulation

Zachary N. Wilson, Amber L. Scott, Robin D. Dowell, Greg Odorizzi

Mol Biol Cell. 2018 Jul 15; 29(14): 1718–1731. doi: 10.1091/mbc.E18-01-0015

PMCID:: PMC6080712

Abstract Article PDF–1.9M

Select item 593910117.

Control of vacuole membrane homeostasis by a resident PI-3,5-kinase inhibitor

PC Malia, Johannes Numrich, Taki Nishimura, Ayelén González Montoro, Christopher J. Stefan, Christian Ungermann

Proc Natl Acad Sci U S A. 2018 May 1; 115(18): 4684–4689. Published online 2018 Apr 19. doi: 10.1073/pnas.1722517115

PMCID:: PMC5939101

Abstract Article PDF–1.0M

Select item 592252818.

Global analysis of genetic circuitry and adaptive mechanisms enabling resistance to the azole antifungal drugs

Harley O’Connor Mount, Nicole M. Revie, Robert T. Todd, Kaitlin Anstett, Cathy Collins, Michael Costanzo, Charles Boone, Nicole Robbins, Anna Selmecki, Leah E. Cowen

PLoS Genet. 2018 Apr; 14(4): e1007319. Published online 2018 Apr 27. doi: 10.1371/journal.pgen.1007319