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Items: 1 to 20 of 58

1.
Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle
Michael J. O’Brien, Athar Ansari
Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.
Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968
PMCID:
PMC10872477
AbstractArticlePDF–1.7M
2.
The social and structural architecture of the yeast protein interactome
André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann
Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5
PMCID:
PMC10700138
AbstractArticlePDF–20M
3.
Xrn1 biochemically associates with eisosome proteins after the post diauxic shift in yeast
Baptiste Courtin, Abdelkader Namane, Maite Gomard, Laura Meyer, Alain Jacquier, Micheline Fromont-Racine
MicroPubl Biol. 2023; 2023: 10.17912/micropub.biology.000926. Published online 2023 Sep 7. doi: 10.17912/micropub.biology.000926
PMCID:
PMC10514700
AbstractArticlePDF–1.7M
4.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
5.
Nutrient transceptors physically interact with the yeast S6/protein kinase B homolog, Sch9, a TOR kinase target
Zhiqiang Zhang, Ines Cottignie, Griet Van Zeebroeck, Johan M. Thevelein
Biochem J. 2021 Jan 29; 478(2): 357–375. Prepublished online 2021 Jan 4. Published online 2021 Jan 27. doi: 10.1042/BCJ20200722
PMCID:
PMC7850899
AbstractArticlePDF–6.2M
6.
Pkh1p-Ypk1p and Pkh1p-Sch9p Pathways Are Activated by Acetic Acid to Induce a Mitochondrial-Dependent Regulated Cell Death
António Rego, Filipa Mendes, Vítor Costa, Susana Rodrigues Chaves, Manuela Côrte-Real
Oxid Med Cell Longev. 2020; 2020: 7095078. Published online 2020 Apr 2. doi: 10.1155/2020/7095078
PMCID:
PMC7154982
AbstractArticlePDF–992K
7.
Tsr4 and Nap1, two novel members of the ribosomal protein chaperOME
Ingrid Rössler, Julia Embacher, Benjamin Pillet, Guillaume Murat, Laura Liesinger, Jutta Hafner, Julia Judith Unterluggauer, Ruth Birner-Gruenberger, Dieter Kressler, Brigitte Pertschy
Nucleic Acids Res. 2019 Jul 26; 47(13): 6984–7002. Published online 2019 May 7. doi: 10.1093/nar/gkz317
PMCID:
PMC6648895
AbstractArticlePDF–14M
8.
Sphingolipid/Pkh1/2-TORC1/Sch9 Signaling Regulates Ribosome Biogenesis in Tunicamycin-Induced Stress Response in Yeast
Yukari Yabuki, Atsuko Ikeda, Misako Araki, Kentaro Kajiwara, Keiko Mizuta, Kouichi Funato
Genetics. 2019 May; 212(1): 175–186. Published online 2019 Mar 1. doi: 10.1534/genetics.118.301874
PMCID:
PMC6499531
AbstractArticlePDF–1.8M
9.
Heterologous mammalian Akt disrupts plasma membrane homeostasis by taking over TORC2 signaling in Saccharomyces cerevisiae
Isabel Rodríguez-Escudero, Teresa Fernández-Acero, Víctor J. Cid, María Molina
Sci Rep. 2018; 8: 7732. Published online 2018 May 16. doi: 10.1038/s41598-018-25717-w
PMCID:
PMC5955888
AbstractArticlePDF–3.0M
10.
Cell size and growth rate are modulated by TORC2-dependent signals
Rafael Lucena, Maria Alcaide-Gavilán, Katherine Schubert, Maybo He, Matthew Domnauer, Catherine Marquer, Christian Klose, Michal A. Surma, Douglas R. Kellogg
Curr Biol. Author manuscript; available in PMC 2019 Jan 22.
Published in final edited form as: Curr Biol. 2018 Jan 22; 28(2): 196–210.e4. Published online 2017 Dec 28. doi: 10.1016/j.cub.2017.11.069
PMCID:
PMC5787035
AbstractArticlePDF–1.7M
11.
Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4
Jason E. Miller, Liye Zhang, Haoyang Jiang, Yunfei Li, B. Franklin Pugh, Joseph C. Reese
G3 (Bethesda) 2018 Jan; 8(1): 315–330. Published online 2017 Nov 20. doi: 10.1534/g3.117.300415
PMCID:
PMC5765359
AbstractArticlePDF–2.2M
12.
A global interaction network maps a wiring diagram of cellular function
Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Oct 30.
Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420
PMCID:
PMC5661885
AbstractArticlePDF–2.6M
13.
A conserved signaling network monitors delivery of sphingolipids to the plasma membrane in budding yeast
Jesse Clarke, Noah Dephoure, Ira Horecka, Steven Gygi, Douglas Kellogg
Mol Biol Cell. 2017 Oct 1; 28(20): 2589–2599. doi: 10.1091/mbc.E17-01-0081
PMCID:
PMC5620368
AbstractArticlePDF–1.7M
14.
The Genetic Landscape of a Cell
Michael Costanzo, Anastasia Baryshnikova, Jeremy Bellay, Yungil Kim, Eric D. Spear, Carolyn S. Sevier, Huiming Ding, Judice L.Y. Koh, Kiana Toufighi, Sara Mostafavi, Jeany Prinz, Robert P. St. Onge, Benjamin VanderSluis, Taras Makhnevych, Franco J. Vizeacoumar, Solmaz Alizadeh, Sondra Bahr, Renee L. Brost, Yiqun Chen, Murat Cokol, Raamesh Deshpande, Zhijian Li, Zhen-Yuan Lin, Wendy Liang, Michaela Marback, Jadine Paw, Bryan-Joseph San Luis, Ermira Shuteriqi, Amy Hin Yan Tong, Nydia van Dyk, Iain M. Wallace, Joseph A. Whitney, Matthew T. Weirauch, Guoqing Zhong, Hongwei Zhu, Walid A. Houry, Michael Brudno, Sasan Ragibizadeh, Balázs Papp, Csaba Pál, Frederick P. Roth, Guri Giaever, Corey Nislow, Olga G. Troyanskaya, Howard Bussey, Gary D. Bader, Anne-Claude Gingras, Quaid D. Morris, Philip M. Kim, Chris A. Kaiser, Chad L. Myers, Brenda J. Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Sep 15.
Published in final edited form as: Science. 2010 Jan 22; 327(5964): 425–431. doi: 10.1126/science.1180823
PMCID:
PMC5600254
AbstractArticlePDF–2.4M
15.
A Functional Link Between Bir1 and the Saccharomyces cerevisiae Ctf19 Kinetochore Complex Revealed Through Quantitative Fitness Analysis
Vasso Makrantoni, Adam Ciesiolka, Conor Lawless, Josefin Fernius, Adele Marston, David Lydall, Michael J. R. Stark
G3 (Bethesda) 2017 Sep; 7(9): 3203–3215. Published online 2017 Jul 28. doi: 10.1534/g3.117.300089
PMCID:
PMC5592945
AbstractArticlePDF–1.7M
16.
Lipid Signaling via Pkh1/2 Regulates Fungal CO2 Sensing through the Kinase Sch9
Susann Pohlers, Ronny Martin, Thomas Krüger, Daniela Hellwig, Frank Hänel, Olaf Kniemeyer, Hans Peter Saluz, Patrick Van Dijck, Joachim F. Ernst, Axel Brakhage, Fritz A. Mühlschlegel, Oliver Kurzai
mBio. 2017 Jan-Feb; 8(1): e02211-16. Published online 2017 Jan 31. doi: 10.1128/mBio.02211-16
PMCID:
PMC5263247
AbstractArticlePDF–1.4M
17.
A network of conserved synthetic lethal interactions for exploration of precision cancer therapy
Rohith Srivas, John Paul Shen, Chih Cheng Yang, Su Ming Sun, Jianfeng Li, Andrew M. Gross, James Jensen, Katherine Licon, Ana Bojorquez-Gomez, Kristin Klepper, Justin Huang, Daniel Pekin, Jia L. Xu, Huwate Yeerna, Vignesh Sivaganesh, Leonie Kollenstart, Haico van Attikum, Pedro Aza-Blanc, Robert W. Sobol, Trey Ideker
Mol Cell. Author manuscript; available in PMC 2017 Aug 4.
Published in final edited form as: Mol Cell. 2016 Aug 4; 63(3): 514–525. Published online 2016 Jul 21. doi: 10.1016/j.molcel.2016.06.022
PMCID:
PMC5209245
AbstractArticlePDF–1.6M
18.
Using HHsearch to tackle proteins of unknown function: A pilot study with PH domains
David R. Fidler, Sarah E. Murphy, Katherine Courtis, Pantelis Antonoudiou, Rana El‐Tohamy, Jonathan Ient, Timothy P. Levine
Traffic. 2016 Nov; 17(11): 1214–1226. Published online 2016 Oct 9. doi: 10.1111/tra.12432
PMCID:
PMC5091641
AbstractArticlePDF–4.2M
19.
Phosphoinositide kinase signaling controls ER-PM cross-talk
Deike J. Omnus, Andrew G. Manford, Jakob M. Bader, Scott D. Emr, Christopher J. Stefan
Mol Biol Cell. 2016 Apr 1; 27(7): 1170–1180. doi: 10.1091/mbc.E16-01-0002
PMCID:
PMC4814223
AbstractArticlePDF–5.0M
20.
Depletion of yeast PDK1 orthologs triggers a stress-like transcriptional response
Daniel Pastor-Flores, Jofre Ferrer-Dalmau, Anna Bahí, Martí Boleda, Ricardo M. Biondi, Antonio Casamayor
BMC Genomics. 2015; 16(1): 719. Published online 2015 Sep 21. doi: 10.1186/s12864-015-1903-8
PMCID:
PMC4578605
AbstractArticlePDF–2.2M

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