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Select item 92098111.

New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224

PMCID:: PMC9209811

Abstract Article PDF–818K

Select item 86329682.

Structural basis of Ty3 retrotransposon integration at RNA Polymerase III-transcribed genes

Guillermo Abascal-Palacios, Laura Jochem, Carlos Pla-Prats, Fabienne Beuron, Alessandro Vannini

Nat Commun. 2021; 12: 6992. Published online 2021 Nov 30. doi: 10.1038/s41467-021-27338-w

PMCID:: PMC8632968

Abstract Article PDF–3.4M

Select item 75156943.

RNA-binding and prion domains: the Yin and Yang of phase separation

Nieves Lorenzo Gotor, Alexandros Armaos, Giulia Calloni, Marc Torrent Burgas, R Martin Vabulas, Natalia Sanchez De Groot, Gian Gaetano Tartaglia

Nucleic Acids Res. 2020 Sep 25; 48(17): 9491–9504. Published online 2020 Aug 28. doi: 10.1093/nar/gkaa681

PMCID:: PMC7515694

Abstract Article PDF–3.1M

Select item 62913664.

The cellular economy of the Saccharomyces cerevisiae zinc proteome

Yirong Wang, Erin Weisenhorn, Colin MacDiarmid, Claudia Andreini, Michael Bucci, Janet Taggart, Lucia Banci, Jason Russell, Joshua J. Coon, David J. Eide

Metallomics. Author manuscript; available in PMC 2019 Dec 12.

Published in final edited form as: Metallomics. 2018 Dec 12; 10(12): 1755–1776. doi: 10.1039/c8mt00269j

PMCID:: PMC6291366

Abstract Article PDF–3.0M

Select item 47439195.

The Replisome-Coupled E3 Ubiquitin Ligase Rtt101^Mms22 Counteracts Mrc1 Function to Tolerate Genotoxic Stress

Raymond Buser, Vanessa Kellner, Andre Melnik, Caroline Wilson-Zbinden, René Schellhaas, Lisa Kastner, Wojciech Piwko, Martina Dees, Paola Picotti, Marija Maric, Karim Labib, Brian Luke, Matthias Peter

PLoS Genet. 2016 Feb; 12(2): e1005843. Published online 2016 Feb 5. doi: 10.1371/journal.pgen.1005843

PMCID:: PMC4743919

Abstract Article PDF–9.8M

Select item 39452216.

Co-translational Localization of an LTR-Retrotransposon RNA to the Endoplasmic Reticulum Nucleates Virus-Like Particle Assembly Sites

Jung H. Doh, Sheila Lutz, M. Joan Curcio

PLoS Genet. 2014 Mar; 10(3): e1004219. Published online 2014 Mar 6. doi: 10.1371/journal.pgen.1004219

PMCID:: PMC3945221

Abstract Article PDF–11M

Select item 35480827.

Ty1 Gag enhances the stability and nuclear export of Ty1 mRNA

Mary Ann Checkley, Jessica A. Mitchell, Linda D. Eizenstat, Stephen J. Lockett, David J. Garfinkel

Traffic. Author manuscript; available in PMC 2014 Jan 1.

Published in final edited form as: Traffic. 2013 Jan; 14(1): 57–69. Published online 2012 Oct 17. doi: 10.1111/tra.12013

PMCID:: PMC3548082

Abstract Article PDF–2.4M

Select item 35114298.

Evolutionary Genomics of Transposable Elements in Saccharomyces cerevisiae

Martin Carr, Douda Bensasson, Casey M. Bergman

PLoS One. 2012; 7(11): e50978. Published online 2012 Nov 30. doi: 10.1371/journal.pone.0050978

PMCID:: PMC3511429

Abstract Article PDF–917K

Select item 32581309.

A single zinc finger optimizes the DNA interactions of the nucleocapsid protein of the yeast retrotransposon Ty3

Kathy R. Chaurasiya, Hylkje Geertsema, Gaël Cristofari, Jean-Luc Darlix, Mark C. Williams

Nucleic Acids Res. 2012 Jan; 40(2): 751–760. Published online 2011 Sep 14. doi: 10.1093/nar/gkr726

PMCID:: PMC3258130

Abstract Article PDF–1.1M

Select item 314095810.

Characterization of Cell Cycle Specific Protein Interaction Networks of the Yeast 26S Proteasome Complex by the QTAX Strategy

Robyn M. Kaake, Tijana Milenković, Nataša Pržulj, Peter Kaiser, Lan Huang

J Proteome Res. Author manuscript; available in PMC 2011 Jul 21.

Published in final edited form as: J Proteome Res. 2010 Apr 5; 9(4): 2016–2029. doi: 10.1021/pr1000175

PMCID:: PMC3140958

Abstract Article PDF–3.2M

Select item 313444211.

Defining the Specificity of Cotranslationally Acting Chaperones by Systematic Analysis of mRNAs Associated with Ribosome-Nascent Chain Complexes

Marta del Alamo, Daniel J. Hogan, Sebastian Pechmann, Veronique Albanese, Patrick O. Brown, Judith Frydman

PLoS Biol. 2011 Jul; 9(7): e1001100. Published online 2011 Jul 12. doi: 10.1371/journal.pbio.1001100

PMCID:: PMC3134442

Abstract Article PDF–3.7M

Select item 307093812.

Diverse protein kinase interactions identified by protein microarrays reveal novel connections between cellular processes

Joseph Fasolo, Andrea Sboner, Mark G.F. Sun, Haiyuan Yu, Rui Chen, Donald Sharon, Philip M. Kim, Mark Gerstein, Michael Snyder

Genes Dev. 2011 Apr; 25(7): 767–778. doi: 10.1101/gad.1998811

PMCID:: PMC3070938

Abstract Article PDF–1.2M

Select item 306783813.

The TY3 Gag3 Spacer Controls Intracellular Condensation and Uncoating

Kristina Clemens, Liza Larsen, Min Zhang, Yurii Kuznetsov, Virginia Bilanchone, Arlo Randall, Adam Harned, Rhonda DaSilva, Kunio Nagashima, Alexander McPherson, Pierre Baldi, Suzanne Sandmeyer

J Virol. 2011 Apr; 85(7): 3055–3066. Published online 2011 Jan 26. doi: 10.1128/JVI.01055-10

PMCID:: PMC3067838

Abstract Article PDF–2.0M

Select item 287829414.

Two-hybrid analysis of Ty3 capsid subdomain interactions

Min Zhang, Liza SZ Larsen, Becky Irwin, Virginia Bilanchone, Suzanne Sandmeyer

Mob DNA. 2010; 1: 14. Published online 2010 May 5. doi: 10.1186/1759-8753-1-14

PMCID:: PMC2878294

Abstract Article PDF–713K

Select item 278735315.

Purification of Nuclear Poly(A)-binding Protein Nab2 Reveals Association with the Yeast Transcriptome and a Messenger Ribonucleoprotein Core Structure

Julien Batisse, Claire Batisse, Aidan Budd, Bettina Böttcher, Ed Hurt

J Biol Chem. 2009 Dec 11; 284(50): 34911–34917. Published online 2009 Oct 19. doi: 10.1074/jbc.M109.062034

PMCID:: PMC2787353

Abstract Article PDF–3.8M

Select item 277269116.

Ty3 Nuclear Entry Is Initiated by Viruslike Particle Docking on GLFG Nucleoporins

Nadejda Beliakova-Bethell, Laura J. Terry, Virginia Bilanchone, Rhonda DaSilva, Kunio Nagashima, Susan R. Wente, Suzanne Sandmeyer

J Virol. 2009 Nov; 83(22): 11914–11925. Published online 2009 Sep 16. doi: 10.1128/JVI.01192-09

PMCID:: PMC2772691

Abstract Article PDF–2.3M

Select item 270147517.

Ty3 Gag3 Protein Forms Ordered Particles in Escherichia Coli

Liza S.Z. Larsen, Yurii Kuznetsov, Alex McPherson, G.Wesley Hatfield, Suzanne Sandmeyer

Virology. Author manuscript; available in PMC 2009 Jun 24.

Published in final edited form as: Virology. 2008 Jan 20; 370(2): 223–227. Published online 2007 Oct 26. doi: 10.1016/j.virol.2007.09.017

PMCID:: PMC2701475

Abstract Article PDF–504K

Select item 257886018.

Distinct roles for Khd1p in the localization and expression of bud-localized mRNAs in yeast

Yuko Hasegawa, Kenji Irie, André P. Gerber

RNA. 2008 Nov; 14(11): 2333–2347. doi: 10.1261/rna.1016508

PMCID:: PMC2578860

Abstract Article PDF–1.3M

Select item 225893319.

Ty3 Nucleocapsid Controls Localization of Particle Assembly

Liza S. Z. Larsen, Nadejda Beliakova-Bethell, Virginia Bilanchone, Min Zhang, Anne Lamsa, Rhonda DaSilva, G. Wesley Hatfield, Kunio Nagashima, Suzanne Sandmeyer

J Virol. 2008 Mar; 82(5): 2501–2514. Published online 2007 Dec 19. doi: 10.1128/JVI.01814-07

PMCID:: PMC2258933

Abstract Article PDF–1.4M

Select item 193327020.

Ty3 Capsid Mutations Reveal Early and Late Functions of the Amino-Terminal Domain

Liza S. Z. Larsen, Min Zhang, Nadejda Beliakova-Bethell, Virginia Bilanchone, Anne Lamsa, Kunio Nagashima, Rani Najdi, Kathryn Kosaka, Vuk Kovacevic, Jianlin Cheng, Pierre Baldi, G. Wesley Hatfield, Suzanne Sandmeyer

J Virol. 2007 Jul; 81(13): 6957–6972. Published online 2007 Apr 18. doi: 10.1128/JVI.02207-06