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Select item 114236781.

An APEX2-based proximity-dependent biotinylation assay with temporal specificity to study protein interactions during autophagy in the yeast Saccharomyces cerevisiae

Yasmina Filali-Mouncef, Alexandre Leytens, Prado Vargas Duarte, Mattia Zampieri, Jörn Dengjel, Fulvio Reggiori

Autophagy. 2024; 20(10): 2323–2337. Published online 2024 Jul 3. doi: 10.1080/15548627.2024.2366749

PMCID:: PMC11423678

Abstract Article PDF–1.7M

Select item 108724772.

Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle

Michael J. O’Brien, Athar Ansari

Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.

Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968

PMCID:: PMC10872477

Abstract Article PDF–1.7M

Select item 98811763.

The S. cerevisiae m⁶A-reader Pho92 promotes timely meiotic recombination by controlling key methylated transcripts

Jérémy Scutenaire, Damien Plassard, Mélody Matelot, Tommaso Villa, Julie Zumsteg, Domenico Libri, Bertrand Séraphin

Nucleic Acids Res. 2023 Jan 25; 51(2): 517–535. Published online 2022 Aug 8. doi: 10.1093/nar/gkac640

PMCID:: PMC9881176

Abstract Article PDF–7.3M

Select item 92098114.

New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224

PMCID:: PMC9209811

Abstract Article PDF–818K

Select item 74747325.

Membrane-tethering of cytochrome c accelerates regulated cell death in yeast

Alexandra Toth, Andreas Aufschnaiter, Olga Fedotovskaya, Hannah Dawitz, Pia Ädelroth, Sabrina Büttner, Martin Ott

Cell Death Dis. 2020 Sep; 11(9): 722. Published online 2020 Sep 5. doi: 10.1038/s41419-020-02920-0

PMCID:: PMC7474732

Abstract Article PDF–2.2M

Select item 72596366.

A tps1Δ persister-like state in Saccharomyces cerevisiae is regulated by MKT1

Patrick A. Gibney, Anqi Chen, Ariel Schieler, Jonathan C. Chen, Yifan Xu, David G. Hendrickson, R. Scott McIsaac, Joshua D. Rabinowitz, David Botstein

PLoS One. 2020; 15(5): e0233779. Published online 2020 May 29. doi: 10.1371/journal.pone.0233779

PMCID:: PMC7259636

Abstract Article PDF–2.3M

Select item 62128327.

The Crabtree Effect Shapes the Saccharomyces cerevisiae Lag Phase during the Switch between Different Carbon Sources

Gemma Perez-Samper, Bram Cerulus, Abbas Jariani, Lieselotte Vermeersch, Nuria Barrajón Simancas, Markus M. M. Bisschops, Joost van den Brink, Daniel Solis-Escalante, Brigida Gallone, Dries De Maeyer, Elise van Bael, Tom Wenseleers, Jan Michiels, Kathleen Marchal, Pascale Daran-Lapujade, Kevin J. Verstrepen

mBio. 2018 Sep-Oct; 9(5): e01331-18. Published online 2018 Oct 30. doi: 10.1128/mBio.01331-18

PMCID:: PMC6212832

Abstract Article PDF–3.3M

Select item 59619168.

Decreasing cytosolic translation is beneficial to yeast and human Tafazzin-deficient cells

Maxence de Taffin de Tilques, Jean-Paul Lasserre, François Godard, Elodie Sardin, Marine Bouhier, Marina Le Guedard, Roza Kucharczyk, Patrice X. Petit, Eric Testet, Jean-Paul di Rago, Déborah Tribouillard-Tanvier

Microb Cell. 2018 May 7; 5(5): 220–232. Published online 2018 Feb 18. doi: 10.15698/mic2018.05.629

PMCID:: PMC5961916

Abstract Article PDF–1.2M

Select item 56659779.

INA complex liaises the F₁F_o-ATP synthase membrane motor modules

Nataliia Naumenko, Marcel Morgenstern, Robert Rucktäschel, Bettina Warscheid, Peter Rehling

Nat Commun. 2017; 8: 1237. Published online 2017 Nov 1. doi: 10.1038/s41467-017-01437-z

PMCID:: PMC5665977

Abstract Article PDF–1.9M

Select item 505508310.

Functional Metabolomics Describes the Yeast Biosynthetic Regulome

Michael Mülleder, Enrica Calvani, Mohammad Tauqeer Alam, Richard Kangda Wang, Florian Eckerstorfer, Aleksej Zelezniak, Markus Ralser

Cell. 2016 Oct 6; 167(2): 553–565.e12. doi: 10.1016/j.cell.2016.09.007

PMCID:: PMC5055083

Abstract Article PDF–3.9M

Select item 442018811.

Engineering a prokaryotic apocytochrome c as an efficient substrate for Saccharomyces cerevisiae cytochrome c heme lyase

Andreia F. Verissimo, Joohee Sanders, Fevzi Daldal, Carsten Sanders

Biochem Biophys Res Commun. Author manuscript; available in PMC 2015 May 5.

Published in final edited form as: Biochem Biophys Res Commun. 2012 Jul 20; 424(1): 130–135. Published online 2012 Jun 23. doi: 10.1016/j.bbrc.2012.06.088

PMCID:: PMC4420188

Abstract Article PDF–658K

Select item 417536512.

The Mitochondrial ADP/ATP Carrier Associates with the Inner Membrane Presequence Translocase in a Stoichiometric Manner

Carola S. Mehnert, Heike Rampelt, Michael Gebert, Silke Oeljeklaus, Sandra G. Schrempp, Lioba Kochbeck, Bernard Guiard, Bettina Warscheid, Martin van der Laan

J Biol Chem. 2014 Sep 26; 289(39): 27352–27362. Published online 2014 Aug 14. doi: 10.1074/jbc.M114.556498

PMCID:: PMC4175365

Abstract Article PDF–1.5M

Select item 377220213.

Characterization of Assembly Intermediates Containing Subunit 1 of Yeast Cytochrome Oxidase

Gavin P. McStay, Chen-Hsien Su, Susan M. Thomas, Jonathan Tong Xu, Alexander Tzagoloff

J Biol Chem. 2013 Sep 13; 288(37): 26546–26556. Published online 2013 Jul 29. doi: 10.1074/jbc.M113.498592

PMCID:: PMC3772202

Abstract Article PDF–4.2M

Select item 375691414.

A complex of Cox4 and mitochondrial Hsp70 plays an important role in the assembly of the cytochrome c oxidase

Lena Böttinger, Bernard Guiard, Silke Oeljeklaus, Bogusz Kulawiak, Nicole Zufall, Nils Wiedemann, Bettina Warscheid, Martin van der Laan, Thomas Becker

Mol Biol Cell. 2013 Sep 1; 24(17): 2609–2619. doi: 10.1091/mbc.E13-02-0106

PMCID:: PMC3756914

Abstract Article PDF–2.3M

Select item 343423615.

Dissecting DNA damage response pathways by analyzing protein localization and abundance changes during DNA replication stress

Johnny M. Tkach, Askar Yimit, Anna Y. Lee, Michael Riffle, Michael Costanzo, Daniel Jaschob, Jason A. Hendry, Jiongwen Ou, Jason Moffat, Charles Boone, Trisha N. Davis, Corey Nislow, Grant W. Brown

Nat Cell Biol. Author manuscript; available in PMC 2013 Mar 1.

Published in final edited form as: Nat Cell Biol. 2012 Sep; 14(9): 966–976. Published online 2012 Jul 29. doi: 10.1038/ncb2549

PMCID:: PMC3434236

Abstract Article PDF–1.5M

Select item 319815616.

A mitochondrial-focused genetic interaction map reveals a scaffold-like complex required for inner membrane organization in mitochondria

Suzanne Hoppins, Sean R. Collins, Ann Cassidy-Stone, Eric Hummel, Rachel M. DeVay, Laura L. Lackner, Benedikt Westermann, Maya Schuldiner, Jonathan S. Weissman, Jodi Nunnari

J Cell Biol. 2011 Oct 17; 195(2): 323–340. doi: 10.1083/jcb.201107053

PMCID:: PMC3198156

Abstract Article PDF–4.1M

Select item 310370817.

Single vesicle observations of the cardiolipin – cytochrome c interaction: induction of membrane morphology changes

Paul A. Beales, Chris L. Bergstrom, Nienke Geerts, John T. Groves, T. Kyle Vanderlick

Langmuir. Author manuscript; available in PMC 2012 May 17.

Published in final edited form as: Langmuir. 2011 May 17; 27(10): 6107–6115. Published online 2011 Apr 19. doi: 10.1021/la104924c

PMCID:: PMC3103708

Abstract Article PDF–2.0M

Select item 307093818.

Diverse protein kinase interactions identified by protein microarrays reveal novel connections between cellular processes

Joseph Fasolo, Andrea Sboner, Mark G.F. Sun, Haiyuan Yu, Rui Chen, Donald Sharon, Philip M. Kim, Mark Gerstein, Michael Snyder

Genes Dev. 2011 Apr; 25(7): 767–778. doi: 10.1101/gad.1998811

PMCID:: PMC3070938

Abstract Article PDF–1.2M

Select item 305709519.

The nucleotide sequence of Saccharomyces cerevisiae chromosome V

F. S. Dietrich, J. Mulligan, K. Hennessy, M. A. Yelton, E. Allen, R. Araujo, E. Aviles, A. Berno, T. Brennan, J. Carpenter, E. Chen, J. M. Cherry, E. Chung, M. Duncan, E. Guzman, G. Hartzell, S. Hunicke-Smith, R. W. Hyman, A. Kayser, C. Komp, D. Lashkari, H. Lew, D. Lin, D. Mosedale, K. Nakahara, A. Namath, R. Norgren, P. Oefner, C. Oh, F. X. Petel, D. Roberts, P. Sehl, S. Schramm, T. Shogren, V. Smith, P. Taylor, Y. Wei, D. Botstein, R. W. Davis

Nature. Author manuscript; available in PMC 2011 Mar 15.

Published in final edited form as: Nature. 1997 May 29; 387(6632 Suppl): 78–81.

PMCID:: PMC3057095

Abstract Article PDF–73K

Select item 293752420.

Analysis of Leigh Syndrome Mutations in the Yeast SURF1 Homolog Reveals a New Member of the Cytochrome Oxidase Assembly Factor Family

Megan Bestwick, Mi-Young Jeong, Oleh Khalimonchuk, Hyung Kim, Dennis R. Winge

Mol Cell Biol. 2010 Sep; 30(18): 4480–4491. Published online 2010 Jul 12. doi: 10.1128/MCB.00228-10

PMCID:: PMC2937524

Abstract Article PDF–2.0M

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