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Select item 108724771.

Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle

Michael J. O’Brien, Athar Ansari

Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.

Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968

PMCID:: PMC10872477

Abstract Article PDF–1.7M

Select item 107001382.

The social and structural architecture of the yeast protein interactome

André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann

Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5

PMCID:: PMC10700138

Abstract Article PDF–20M

Select item 105166423.

ISW1a modulates cohesin distribution in centromeric and pericentromeric regions

Ireneusz Litwin, Małgorzata Nowicka, Katarzyna Markowska, Ewa Maciaszczyk-Dziubińska, Paulina Tomaszewska, Robert Wysocki, Karol Kramarz

Nucleic Acids Res. 2023 Sep 22; 51(17): 9101–9121. Published online 2023 Jul 24. doi: 10.1093/nar/gkad612

PMCID:: PMC10516642

Abstract Article PDF–2.8M

Select item 102350864.

Rio1 downregulates centromeric RNA levels to promote the timely assembly of structurally fit kinetochores

Ksenia Smurova, Michela Damizia, Carmela Irene, Stefania Stancari, Giovanna Berto, Giulia Perticari, Maria Giuseppina Iacovella, Ilaria D’Ambrosio, Maria Giubettini, Réginald Philippe, Chiara Baggio, Elisabetta Callegaro, Andrea Casagranda, Alessandro Corsini, Vincenzo Gentile Polese, Anna Ricci, Erik Dassi, Peter De Wulf

Nat Commun. 2023; 14: 3172. Published online 2023 Jun 1. doi: 10.1038/s41467-023-38920-9

PMCID:: PMC10235086

Abstract Article PDF–2.6M

Select item 101326185.

Fob1-dependent condensin recruitment and loop extrusion on yeast chromosome III

Manikarna Dinda, Ryan D. Fine, Shekhar Saha, Zhenjia Wang, Chongzhi Zang, Mingguang Li, Jeffrey S. Smith

PLoS Genet. 2023 Apr; 19(4): e1010705. Published online 2023 Apr 14. doi: 10.1371/journal.pgen.1010705

PMCID:: PMC10132618

Abstract Article PDF–3.5M

Select item 92098116.

New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224

PMCID:: PMC9209811

Abstract Article PDF–818K

Select item 83182987.

The selfish yeast plasmid utilizes the condensin complex and condensed chromatin for faithful partitioning

Deepanshu Kumar, Hemant Kumar Prajapati, Anjali Mahilkar, Chien-Hui Ma, Priyanka Mittal, Makkuni Jayaram, Santanu K. Ghosh

PLoS Genet. 2021 Jul; 17(7): e1009660. Published online 2021 Jul 16. doi: 10.1371/journal.pgen.1009660

PMCID:: PMC8318298

Abstract Article PDF–3.5M

Select item 80941178.

SUMOylation stabilizes sister kinetochore biorientation to allow timely anaphase

Xue Bessie Su, Menglu Wang, Claudia Schaffner, Olga O. Nerusheva, Dean Clift, Christos Spanos, David A. Kelly, Michael Tatham, Andreas Wallek, Yehui Wu, Juri Rappsilber, A. Arockia Jeyaprakash, Zuzana Storchova, Ronald T. Hay, Adèle L. Marston

J Cell Biol. 2021 Jul 5; 220(7): e202005130. Published online 2021 Apr 30. doi: 10.1083/jcb.202005130

PMCID:: PMC8094117

Abstract Article PDF–8.1M

Select item 77187519.

Comprehensive Synthetic Genetic Array Analysis of Alleles That Interact with Mutation of the Saccharomyces cerevisiae RecQ Helicases Hrq1 and Sgs1

Elsbeth Sanders, Phoebe A. Nguyen, Cody M. Rogers, Matthew L. Bochman

G3 (Bethesda) 2020 Dec; 10(12): 4359–4368. Published online 2020 Oct 28. doi: 10.1534/g3.120.401709

PMCID:: PMC7718751

Abstract Article PDF–1.2M

Select item 765511010.

Cohesin residency determines chromatin loop patterns

Lorenzo Costantino, Tsung-Han S Hsieh, Rebecca Lamothe, Xavier Darzacq, Douglas Koshland

eLife. 2020; 9: e59889. Published online 2020 Nov 10. doi: 10.7554/eLife.59889

PMCID:: PMC7655110

Abstract Article PDF–11M

Select item 761069111.

Cryo-EM structures of holo condensin reveal a subunit flip-flop mechanism

Byung-Gil Lee, Fabian Merkel, Matteo Allegretti, Markus Hassler, Christopher Cawood, Léa Lecomte, Francis J. O’Reilly, Ludwig R. Sinn, Pilar Gutierrez-Escribano, Marc Kschonsak, Sol Bravo, Takanori Nakane, Juri Rappsilber, Luis Aragon, Martin Beck, Jan Löwe, Christian H. Haering

Nat Struct Mol Biol. Author manuscript; available in PMC 2021 Apr 27.

Published in final edited form as: Nat Struct Mol Biol. 2020 Aug 1; 27(8): 743–751. Published online 2020 Jul 13. doi: 10.1038/s41594-020-0457-x

PMCID:: PMC7610691

Abstract Article PDF–6.8M

Select item 745494812.

Phospho-regulation of the Shugoshin - Condensin interaction at the centromere in budding yeast

Galal Yahya, Yehui Wu, Karolina Peplowska, Jennifer Röhrl, Young-Min Soh, Frank Bürmann, Stephan Gruber, Zuzana Storchova

PLoS Genet. 2020 Aug; 16(8): e1008569. Published online 2020 Aug 18. doi: 10.1371/journal.pgen.1008569

PMCID:: PMC7454948

Abstract Article PDF–2.7M

Select item 727317713.

Chaperone-Mediated Protein Disaggregation Triggers Proteolytic Clearance of Intra-nuclear Protein Inclusions

Fabian den Brave, Lucas V. Cairo, Chandhuru Jagadeesan, Carmen Ruger-Herreros, Axel Mogk, Bernd Bukau, Stefan Jentsch

Cell Rep. 2020 Jun 2; 31(9): 107680. Published online 2020 Jun 2. doi: 10.1016/j.celrep.2020.107680

PMCID:: PMC7273177

Abstract Article

Select item 642089114.

Gene overexpression screen for chromosome instability in yeast primarily identifies cell cycle progression genes

Hanna Tutaj, Elzbieta Pogoda, Katarzyna Tomala, Ryszard Korona

Curr Genet. 2019; 65(2): 483–492. Published online 2018 Sep 22. doi: 10.1007/s00294-018-0885-x

Correction in:: Curr Genet. 2019; 65(2): 493.

PMCID:: PMC6420891

Abstract Article PDF–995K

Select item 632945015.

Real-time imaging of DNA loop extrusion by condensin

Mahipal Ganji, Indra A. Shaltiel, Shveta Bisht, Eugene Kim, Ana Kalichava, Christian H. Haering, Cees Dekker

Science. Author manuscript; available in PMC 2019 Jan 11.

Published in final edited form as: Science. 2018 Apr 6; 360(6384): 102–105. Published online 2018 Feb 22. doi: 10.1126/science.aar7831

PMCID:: PMC6329450

Abstract Article PDF–2.1M

Select item 624984516.

Geometric partitioning of cohesin and condensin is a consequence of chromatin loops

Josh Lawrimore, Ayush Doshi, Brandon Friedman, Elaine Yeh, Kerry Bloom

Mol Biol Cell. 2018 Nov 1; 29(22): 2737–2750. doi: 10.1091/mbc.E18-02-0131

PMCID:: PMC6249845

Abstract Article PDF–6.9M

Select item 621571317.

Systematic Analysis of Complex Genetic Interactions

Elena Kuzmin, Benjamin VanderSluis, Wen Wang, Guihong Tan, Raamesh Deshpande, Yiqun Chen, Matej Usaj, Attila Balint, Mojca Mattiazzi Usaj, Jolanda van Leeuwen, Elizabeth N. Koch, Carles Pons, Andrius J. Dagilis, Michael Pryszlak, Jason Zi Yang Wang, Julia Hanchard, Margot Riggi, Kaicong Xu, Hamed Heydari, Bryan-Joseph San Luis, Ermira Shuteriqi, Hongwei Zhu, Nydia Van Dyk, Sara Sharifpoor, Michael Costanzo, Robbie Loewith, Amy Caudy, Daniel Bolnick, Grant W. Brown, Brenda J. Andrews, Charles Boone, Chad L. Myers

Science. Author manuscript; available in PMC 2018 Nov 4.

Published in final edited form as: Science. 2018 Apr 20; 360(6386): eaao1729. doi: 10.1126/science.aao1729

PMCID:: PMC6215713

Abstract Article PDF–1.9M

Select item 611696418.

Condensin Depletion Causes Genome Decompaction Without Altering the Level of Global Gene Expression in Saccharomyces cerevisiae

Matthew Robert Paul, Tovah Elise Markowitz, Andreas Hochwagen, Sevinç Ercan

Genetics. 2018 Sep; 210(1): 331–344. Published online 2018 Jul 3. doi: 10.1534/genetics.118.301217

PMCID:: PMC6116964

Abstract Article PDF–2.6M

Select item 586203619.

The condensin complex is a mechanochemical motor that translocates along DNA

Tsuyoshi Terakawa, Shveta Bisht, Jorine M. Eeftens, Cees Dekker, Christian H. Haering, Eric C. Greene

Science. Author manuscript; available in PMC 2018 May 3.

Published in final edited form as: Science. 2017 Nov 3; 358(6363): 672–676. Published online 2017 Sep 7. doi: 10.1126/science.aan6516

PMCID:: PMC5862036

Abstract Article PDF–989K

Select item 576535920.

Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4

Jason E. Miller, Liye Zhang, Haoyang Jiang, Yunfei Li, B. Franklin Pugh, Joseph C. Reese

G3 (Bethesda) 2018 Jan; 8(1): 315–330. Published online 2017 Nov 20. doi: 10.1534/g3.117.300415

PMCID:: PMC5765359

Abstract Article PDF–2.2M

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