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Items: 1 to 20 of 44

1.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
ArticlePDF–818K
2.
New Insights in Saccharomyces cerevisiae Response to the Cyanotoxin Microcystin-LR, Revealed by Proteomics and Gene Expression
Elisabete Valério, Sara Barreiros, Sara Rodrigues, Maria V. Turkina, Vitor M. Vasconcelos, Alexandre Campos
Toxins (Basel) 2020 Oct; 12(10): 667. Published online 2020 Oct 21. doi: 10.3390/toxins12100667
PMCID:
PMC7594057
ArticlePDF–11M
3.
The Rad51 paralogs facilitate a novel DNA strand specific damage tolerance pathway
Joel C. Rosenbaum, Braulio Bonilla, Sarah R. Hengel, Tony M. Mertz, Benjamin W. Herken, Hinke G. Kazemier, Catherine A. Pressimone, Timothy C. Ratterman, Ellen MacNary, Alessio De Magis, Youngho Kwon, Stephen K. Godin, Bennett Van Houten, Daniel P. Normolle, Patrick Sung, Subha R. Das, Katrin Paeschke, Steven A. Roberts, Andrew P. VanDemark, Kara A. Bernstein
Nat Commun. 2019; 10: 3515. Published online 2019 Aug 5. doi: 10.1038/s41467-019-11374-8
PMCID:
PMC6683157
ArticlePDF–1.3M
4.
Unscheduled DNA synthesis leads to elevated uracil residues at highly transcribed genomic loci in Saccharomyces cerevisiae
Norah Owiti, Shanqiao Wei, Ashok S. Bhagwat, Nayun Kim
PLoS Genet. 2018 Jul; 14(7): e1007516. Published online 2018 Jul 17. doi: 10.1371/journal.pgen.1007516
PMCID:
PMC6063437
ArticlePDF–5.7M
5.
The Chromatin Remodeler Isw1 Prevents CAG Repeat Expansions During Transcription in Saccharomyces cerevisiae
Melissa R. Koch, Nealia C. M. House, Casey M. Cosetta, Robyn M. Jong, Christelle G. Salomon, Cailin E. Joyce, Elliot A. Philips, Xiaofeng A. Su, Catherine H. Freudenreich
Genetics. 2018 Mar; 208(3): 963–976. Published online 2018 Jan 5. doi: 10.1534/genetics.117.300529
PMCID:
PMC5844344
ArticlePDF–1.6M
6.
Def1 and Dst1 play distinct roles in repair of AP lesions in highly transcribed genomic regions
Norah Owiti, Christopher Lopez, Shivani Singh, Andrei Stephenson, Nayun Kim
DNA Repair (Amst) Author manuscript; available in PMC 2018 Jul 1.
Published in final edited form as: DNA Repair (Amst). 2017 Jul; 55: 31–39. Published online 2017 May 10. doi: 10.1016/j.dnarep.2017.05.003
PMCID:
PMC5815317
ArticlePDF–909K
7.
Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4
Jason E. Miller, Liye Zhang, Haoyang Jiang, Yunfei Li, B. Franklin Pugh, Joseph C. Reese
G3 (Bethesda) 2018 Jan; 8(1): 315–330. Published online 2017 Nov 20. doi: 10.1534/g3.117.300415
PMCID:
PMC5765359
ArticlePDF–2.2M
8.
A global interaction network maps a wiring diagram of cellular function
Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Oct 30.
Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420
PMCID:
PMC5661885
ArticlePDF–2.6M
9.
The Genetic Landscape of a Cell
Michael Costanzo, Anastasia Baryshnikova, Jeremy Bellay, Yungil Kim, Eric D. Spear, Carolyn S. Sevier, Huiming Ding, Judice L.Y. Koh, Kiana Toufighi, Sara Mostafavi, Jeany Prinz, Robert P. St. Onge, Benjamin VanderSluis, Taras Makhnevych, Franco J. Vizeacoumar, Solmaz Alizadeh, Sondra Bahr, Renee L. Brost, Yiqun Chen, Murat Cokol, Raamesh Deshpande, Zhijian Li, Zhen-Yuan Lin, Wendy Liang, Michaela Marback, Jadine Paw, Bryan-Joseph San Luis, Ermira Shuteriqi, Amy Hin Yan Tong, Nydia van Dyk, Iain M. Wallace, Joseph A. Whitney, Matthew T. Weirauch, Guoqing Zhong, Hongwei Zhu, Walid A. Houry, Michael Brudno, Sasan Ragibizadeh, Balázs Papp, Csaba Pál, Frederick P. Roth, Guri Giaever, Corey Nislow, Olga G. Troyanskaya, Howard Bussey, Gary D. Bader, Anne-Claude Gingras, Quaid D. Morris, Philip M. Kim, Chris A. Kaiser, Chad L. Myers, Brenda J. Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Sep 15.
Published in final edited form as: Science. 2010 Jan 22; 327(5964): 425–431. doi: 10.1126/science.1180823
PMCID:
PMC5600254
ArticlePDF–2.4M
10.
Functional Metabolomics Describes the Yeast Biosynthetic Regulome
Michael Mülleder, Enrica Calvani, Mohammad Tauqeer Alam, Richard Kangda Wang, Florian Eckerstorfer, Aleksej Zelezniak, Markus Ralser
Cell. 2016 Oct 6; 167(2): 553–565.e12. doi: 10.1016/j.cell.2016.09.007
PMCID:
PMC5055083
ArticlePDF–3.9M
11.
The Shu complex promotes error-free tolerance of alkylation-induced base excision repair products
Stephen K. Godin, Zhuying Zhang, Benjamin W. Herken, James W. Westmoreland, Alison G. Lee, Michael J. Mihalevic, Zhongxun Yu, Robert W. Sobol, Michael A. Resnick, Kara A. Bernstein
Nucleic Acids Res. 2016 Sep 30; 44(17): 8199–8215. Published online 2016 Jun 13. doi: 10.1093/nar/gkw535
PMCID:
PMC5041462
ArticlePDF–9.6M
12.
An inter‐species protein–protein interaction network across vast evolutionary distance
Quan Zhong, Samuel J Pevzner, Tong Hao, Yang Wang, Roberto Mosca, Jörg Menche, Mikko Taipale, Murat Taşan, Changyu Fan, Xinping Yang, Patrick Haley, Ryan R Murray, Flora Mer, Fana Gebreab, Stanley Tam, Andrew MacWilliams, Amélie Dricot, Patrick Reichert, Balaji Santhanam, Lila Ghamsari, Michael A Calderwood, Thomas Rolland, Benoit Charloteaux, Susan Lindquist, Albert‐László Barabási, David E Hill, Patrick Aloy, Michael E Cusick, Yu Xia, Frederick P Roth, Marc Vidal
Mol Syst Biol. 2016 Apr; 12(4): 865. Published online 2016 Apr 23. doi: 10.15252/msb.20156484
PMCID:
PMC4848758
ArticlePDF–2.1M
13.
Phosphatase Complex Pph3/Psy2 Is Involved in Regulation of Efficient Non-Homologous End-Joining Pathway in the Yeast Saccharomyces cerevisiae
Katayoun Omidi, Mohsen Hooshyar, Matthew Jessulat, Bahram Samanfar, Megan Sanders, Daniel Burnside, Sylvain Pitre, Andrew Schoenrock, Jianhua Xu, Mohan Babu, Ashkan Golshani
PLoS One. 2014; 9(1): e87248. Published online 2014 Jan 31. doi: 10.1371/journal.pone.0087248
PMCID:
PMC3909046
ArticlePDF–796K
14.
Saccharomyces cerevisiae Apn1 Mutation Affecting Stable Protein Expression Mimics Catalytic Activity Impairment: Implications for Assessing DNA Repair Capacity in Humans
Lydia P. Morris, Natalya Degtyareva, Clayton Sheppard, Lanier Heyburn, Andrei A. Ivanov, Yoke Wah Kow, Paul W. Doetsch
DNA Repair (Amst) Author manuscript; available in PMC 2013 Sep 1.
Published in final edited form as: DNA Repair (Amst). 2012 Sep 1; 11(9): 753–765. Published online 2012 Jul 19. doi: 10.1016/j.dnarep.2012.06.008
PMCID:
PMC3572540
ArticlePDF–3.4M
15.
Saccharomyces cerevisiae Genetics Predicts Candidate Therapeutic Genetic Interactions at the Mammalian Replication Fork
Derek M. van Pel, Peter C. Stirling, Sean W. Minaker, Payal Sipahimalani, Philip Hieter
G3 (Bethesda) 2013 Feb; 3(2): 273–282. Published online 2013 Feb 1. doi: 10.1534/g3.112.004754
PMCID:
PMC3564987
ArticlePDF–2.3M
16.
The Yeast SR-Like Protein Npl3 Links Chromatin Modification to mRNA Processing
Erica A. Moehle, Colm J. Ryan, Nevan J. Krogan, Tracy L. Kress, Christine Guthrie
PLoS Genet. 2012 Nov; 8(11): e1003101. Published online 2012 Nov 29. doi: 10.1371/journal.pgen.1003101
PMCID:
PMC3510044
ArticlePDF–3.4M
17.
Apn1 AP-endonuclease is essential for the repair of oxidatively damaged DNA bases in yeast frataxin-deficient cells
Sophie Lefevre, Caroline Brossas, Françoise Auchère, Nicole Boggetto, Jean-Michel Camadro, Renata Santos
Hum Mol Genet. 2012 Sep 15; 21(18): 4060–4072. Published online 2012 Jun 16. doi: 10.1093/hmg/dds230
PMCID:
PMC3428155
ArticlePDF–584K
18.
MMS19 assembles iron-sulfur proteins required for DNA metabolism and genomic integrity
Oliver Stehling, Ajay A. Vashisht, Judita Mascarenhas, Zophonias O. Jonsson, Tanu Sharma, Daili J.A. Netz, Antonio J. Pierik, James A. Wohlschlegel, Roland Lill
Science. Author manuscript; available in PMC 2013 Jan 13.
Published in final edited form as: Science. 2012 Jul 13; 337(6091): 195–199. Published online 2012 Jun 7. doi: 10.1126/science.1219723
PMCID:
PMC3420340
ArticlePDF–1.8M
19.
Genetic interactions between HNT3/Aprataxin and RAD27/FEN1 suggest parallel pathways for 5′ end processing during base excision repair
James M. Daley, Thomas E. Wilson, Dindial Ramotar
DNA Repair (Amst) Author manuscript; available in PMC 2012 Apr 4.
Published in final edited form as: DNA Repair (Amst). 2010 Jun 4; 9(6): 690–699. Published online 2010 Apr 15. doi: 10.1016/j.dnarep.2010.03.006
PMCID:
PMC3319107
ArticlePDF–3.5M
20.
The dCMP transferase activity of yeast Rev1 is biologically relevant during the bypass of endogenously generated AP sites
Nayun Kim, Sarah V. Mudrak, Sue Jinks-Robertson
DNA Repair (Amst) Author manuscript; available in PMC 2012 Dec 10.
Published in final edited form as: DNA Repair (Amst). 2011 Dec 10; 10(12): 1262–1271. Published online 2011 Oct 22. doi: 10.1016/j.dnarep.2011.09.017
PMCID:
PMC3229159
ArticlePDF–2.2M

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