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Select item 104399801.

Proteins rather than mRNAs regulate nucleation and persistence of Oskar germ granules in Drosophila

Harrison A. Curnutte, Xinyue Lan, Manuel Sargen, Si Man Ao Ieong, Dylan Campbell, Hyosik Kim, Yijun Liao, Sarah Bailah Lazar, Tatjana Trcek

Cell Rep. Author manuscript; available in PMC 2023 Aug 20.

Published in final edited form as: Cell Rep. 2023 Jul 25; 42(7): 112723. Published online 2023 Jun 28. doi: 10.1016/j.celrep.2023.112723

PMCID:: PMC10439980

Abstract Article PDF–2.4M

Select item 102845512.

H/ACA snRNP–dependent ribosome biogenesis regulates translation of polyglutamine proteins

Shane M. Breznak, Yingshi Peng, Limin Deng, Noor M. Kotb, Zachary Flamholz, Ian T. Rapisarda, Elliot T. Martin, Kara A. LaBarge, Dan Fabris, Elizabeth R. Gavis, Prashanth Rangan

Sci Adv. 2023 Jun; 9(25): eade5492. Published online 2023 Jun 21. doi: 10.1126/sciadv.ade5492

PMCID:: PMC10284551

Abstract Article PDF–1.5M

Select item 96356443.

Enteric bacterial infection in Drosophila induces whole-body alterations in metabolic gene expression independently of the immune deficiency signaling pathway

Rujuta Deshpande, Byoungchun Lee, Savraj S Grewal

G3 (Bethesda) 2022 Nov; 12(11): jkac163. Published online 2022 Jul 4. doi: 10.1093/g3journal/jkac163

PMCID:: PMC9635644

Abstract Article PDF–2.2M

Select item 92094254.

Global stable-isotope tracing metabolomics reveals system-wide metabolic alternations in aging Drosophila

Ruohong Wang, Yandong Yin, Jingshu Li, Hongmiao Wang, Wanting Lv, Yang Gao, Tangci Wang, Yedan Zhong, Zhiwei Zhou, Yuping Cai, Xiaoyang Su, Nan Liu, Zheng-Jiang Zhu

Nat Commun. 2022; 13: 3518. Published online 2022 Jun 20. doi: 10.1038/s41467-022-31268-6

PMCID:: PMC9209425

Abstract Article PDF–2.4M

Select item 86644865.

Genome-wide phenotypic RNAi screen in the Drosophila wing: phenotypic description of functional classes

Ana López-Varea, Patricia Vega-Cuesta, Ana Ruiz-Gómez, Cristina M Ostalé, Cristina Molnar, Covadonga F Hevia, Mercedes Martín, Maria F Organista, Jesus de Celis, Joaquín Culí, Nuria Esteban, Jose F de Celis

G3 (Bethesda) 2021 Dec; 11(12): jkab349. Published online 2021 Oct 2. doi: 10.1093/g3journal/jkab349

PMCID:: PMC8664486

Abstract Article PDF–3.1M

Select item 80002786.

Crtc modulates fasting programs associated with 1-C metabolism and inhibition of insulin signaling

Tian Wang, Ezra Wiater, Xinmin Zhang, John B. Thomas, Marc Montminy

Proc Natl Acad Sci U S A. 2021 Mar 23; 118(12): e2024865118. Published online 2021 Mar 15. doi: 10.1073/pnas.2024865118

PMCID:: PMC8000278

Abstract Article PDF–1.7M

Select item 68225857.

The CAF-1 complex couples Hippo pathway target gene expression and DNA replication

William B. Yee, Patrick M. Delaney, Pamela J. Vanderzalm, Srinivas Ramachandran, Richard G. Fehon

Mol Biol Cell. 2019 Nov 1; 30(23): 2929–2942. doi: 10.1091/mbc.E19-07-0387

PMCID:: PMC6822585

Abstract Article PDF–4.2M

Select item 63430448.

Towards comprehensive annotation of Drosophila melanogaster enzymes in FlyBase

Phani V Garapati, Jingyao Zhang, Alix J Rey, Steven J Marygold

Database (Oxford) 2019; 2019: bay144. Published online 2019 Jan 23. doi: 10.1093/database/bay144

PMCID:: PMC6343044

Abstract Article PDF–13M

Select item 62225889.

Ade2 Functions in the Drosophila Fat Body To Promote Sleep

Maria E. Yurgel, Kreesha D. Shah, Elizabeth B. Brown, Carter Burns, Ryan A. Bennick, Justin R. DiAngelo, Alex C. Keene

G3 (Bethesda) 2018 Nov; 8(11): 3385–3395. Published online 2018 Sep 24. doi: 10.1534/g3.118.200554

PMCID:: PMC6222588

Abstract Article PDF–1.5M

Select item 607860410.

Human R1441C LRRK2 regulates the synaptic vesicle proteome and phosphoproteome in a Drosophila model of Parkinson’s disease

Md Shariful Islam, Hendrik Nolte, Wright Jacob, Anna B. Ziegler, Stefanie Pütz, Yael Grosjean, Karolina Szczepanowska, Aleksandra Trifunovic, Thomas Braun, Hermann Heumann, Rolf Heumann, Bernhard Hovemann, Darren J. Moore, Marcus Krüger

Hum Mol Genet. 2016 Dec 15; 25(24): 5365–5382. Published online 2016 Oct 29. doi: 10.1093/hmg/ddw352

PMCID:: PMC6078604

Abstract Article PDF–1.9M

Select item 570780511.

Landscape and evolution of tissue-specific alternative polyadenylation across Drosophila species

Piero Sanfilippo, Jiayu Wen, Eric C. Lai

Genome Biol. 2017; 18: 229. Published online 2017 Nov 30. doi: 10.1186/s13059-017-1358-0

PMCID:: PMC5707805

Abstract Article PDF–3.2M

Select item 568900212.

Transcription elongation rate has a tissue-specific impact on alternative cleavage and polyadenylation in Drosophila melanogaster

Xiaochuan Liu, Jaime Freitas, Dinghai Zheng, Marta S. Oliveira, Mainul Hoque, Torcato Martins, Telmo Henriques, Bin Tian, Alexandra Moreira

RNA. 2017 Dec; 23(12): 1807–1816. doi: 10.1261/rna.062661.117

PMCID:: PMC5689002

Abstract Article PDF–4.0M

Select item 478811613.

Hedgehog Signaling Strength Is Orchestrated by the mir-310 Cluster of MicroRNAs in Response to Diet

Ibrahim Ömer Çiçek, Samir Karaca, Marko Brankatschk, Suzanne Eaton, Henning Urlaub, Halyna R. Shcherbata

Genetics. 2016 Mar; 202(3): 1167–1183. Published online 2016 Jan 22. doi: 10.1534/genetics.115.185371

PMCID:: PMC4788116

Abstract Article PDF–4.7M

Select item 473800514.

Proteome-wide dataset supporting the study of ancient metazoan macromolecular complexes

Sadhna Phanse, Cuihong Wan, Blake Borgeson, Fan Tu, Kevin Drew, Greg Clark, Xuejian Xiong, Olga Kagan, Julian Kwan, Alexandr Bezginov, Kyle Chessman, Swati Pal, Graham Cromar, Ophelia Papoulas, Zuyao Ni, Daniel R. Boutz, Snejana Stoilova, Pierre C. Havugimana, Xinghua Guo, Ramy H. Malty, Mihail Sarov, Jack Greenblatt, Mohan Babu, W. Brent Derry, Elisabeth R. Tillier, John B. Wallingford, John Parkinson, Edward M. Marcotte, Andrew Emili

Data Brief. 2016 Mar; 6: 715–721. Published online 2015 Dec 12. doi: 10.1016/j.dib.2015.11.062

PMCID:: PMC4738005

Abstract Article PDF–205K

Select item 452833015.

Gene Model Annotations for Drosophila melanogaster: The Rule-Benders

Madeline A. Crosby, L. Sian Gramates, Gilberto dos Santos, Beverley B. Matthews, Susan E. St. Pierre, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, David B. Emmert, Susan M. Russo, William M. Gelbart, the FlyBase Consortium

G3 (Bethesda) 2015 Aug; 5(8): 1737–1749. Published online 2015 Jun 24. doi: 10.1534/g3.115.018937

PMCID:: PMC4528330

Abstract Article PDF–2.2M

Select item 452832916.

Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data

Beverley B. Matthews, Gilberto dos Santos, Madeline A. Crosby, David B. Emmert, Susan E. St. Pierre, L. Sian Gramates, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, Victor Strelets, Susan M. Russo, William M. Gelbart, the FlyBase Consortium

G3 (Bethesda) 2015 Aug; 5(8): 1721–1736. Published online 2015 Jun 24. doi: 10.1534/g3.115.018929

PMCID:: PMC4528329

Abstract Article PDF–4.9M

Select item 445871417.

The Drosophila Helicase Maleless (MLE) is Implicated in Functions Distinct From its Role in Dosage Compensation

Simona Cugusi, Satish Kallappagoudar, Huiping Ling, John C. Lucchesi

Mol Cell Proteomics. 2015 Jun; 14(6): 1478–1488. Published online 2015 Mar 16. doi: 10.1074/mcp.M114.040667

PMCID:: PMC4458714

Abstract Article PDF–625K

Select item 435288718.

The Release 6 reference sequence of the Drosophila melanogaster genome

Roger A. Hoskins, Joseph W. Carlson, Kenneth H. Wan, Soo Park, Ivonne Mendez, Samuel E. Galle, Benjamin W. Booth, Barret D. Pfeiffer, Reed A. George, Robert Svirskas, Martin Krzywinski, Jacqueline Schein, Maria Carmela Accardo, Elisabetta Damia, Giovanni Messina, María Méndez-Lago, Beatriz de Pablos, Olga V. Demakova, Evgeniya N. Andreyeva, Lidiya V. Boldyreva, Marco Marra, A. Bernardo Carvalho, Patrizio Dimitri, Alfredo Villasante, Igor F. Zhimulev, Gerald M. Rubin, Gary H. Karpen, Susan E. Celniker

Genome Res. 2015 Mar; 25(3): 445–458. doi: 10.1101/gr.185579.114

PMCID:: PMC4352887

Abstract Article PDF–1022K

Select item 433420019.

Regulators of Autophagosome Formation in Drosophila Muscles

Jonathan Zirin, Joppe Nieuwenhuis, Anastasia Samsonova, Rong Tao, Norbert Perrimon

PLoS Genet. 2015 Feb; 11(2): e1005006. Published online 2015 Feb 18. doi: 10.1371/journal.pgen.1005006

PMCID:: PMC4334200

Abstract Article PDF–2.4M

Select item 427152720.

Phylostratigraphic Bias Creates Spurious Patterns of Genome Evolution

Bryan A. Moyers, Jianzhi Zhang

Mol Biol Evol. 2015 Jan 1; 32(1): 258–267. Published online 2014 Oct 13. doi: 10.1093/molbev/msu286

Correction in:: Mol Biol Evol. 2016 Nov; 33(11): 3031.

PMCID:: PMC4271527

Abstract Article PDF–618K

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