PMC Links for GEO Profiles (Select 39314528) - PMC

Xiaoxiao Jiang, Sam Fulte, Fengyan Deng, Shiyuan Chen, Yan Xie, Xiaojuan Chao, Xi C. He, Yuxia Zhang, Tiangang Li, Feng Li, Colin McCoin, E. Matthew Morris, John Thyfault, Wanqing Liu, Linheng Li, Nicholas O. Davidson, Wen-Xing Ding, Hong-Min Ni

J Hepatol. Author manuscript; available in PMC 2022 Sep 7.

Published in final edited form as: J Hepatol. 2022 Sep; 77(3): 619–631. Published online 2022 Apr 19. doi: 10.1016/j.jhep.2022.04.010

PMCID:: PMC9449865

Abstract Article PDF–4.4M

Select item 92984425.

Loss of acinar cell VMP1 triggers spontaneous pancreatitis in mice

Shaogui Wang, Xiaojuan Chao, Xiaoxiao Jiang, Tiantian Wang, Yssa Rodriguez, Ling Yang, Pal Pacher, Hong-Min Ni, Wen-Xing Ding

Autophagy. 2022; 18(7): 1572–1582. Published online 2021 Oct 28. doi: 10.1080/15548627.2021.1990672

PMCID:: PMC9298442

Abstract Article PDF–5.6M

Select item 74159916.

BioID screening of biotinylation sites using the avidin-like protein Tamavidin 2-REV identifies global interactors of stimulator of interferon genes (STING)

Kou Motani, Hidetaka Kosako

J Biol Chem. 2020 Aug 7; 295(32): 11174–11183. Published online 2020 Jun 17. doi: 10.1074/jbc.RA120.014323

PMCID:: PMC7415991

Abstract Article PDF–2.0M

Select item 67488247.

A critical role of VMP1 in lipoprotein secretion

Hideaki Morishita, Yan G Zhao, Norito Tamura, Taki Nishimura, Yuki Kanda, Yuriko Sakamaki, Mitsuyo Okazaki, Dongfang Li, Noboru Mizushima

eLife. 2019; 8: e48834. Published online 2019 Sep 17. doi: 10.7554/eLife.48834

PMCID:: PMC6748824

Abstract Article PDF–4.2M

Select item 49733468.

The pancreatitis-associated protein VMP1, a key regulator of inducible autophagy, promotes Kras^G12D-mediated pancreatic cancer initiation

C Loncle, M I Molejon, S Lac, J I Tellechea, G Lomberk, L Gramatica, M F Fernandez Zapico, N Dusetti, R Urrutia, J L Iovanna

Cell Death Dis. 2016 Jul; 7(7): e2295. Published online 2016 Jul 14. doi: 10.1038/cddis.2016.202

PMCID:: PMC4973346

Abstract Article PDF–2.0M

Select item 35724109.

A conditional knockout resource for the genome–wide study of mouse gene function

William C. Skarnes, Barry Rosen, Anthony P. West, Manousos Koutsourakis, Wendy Bushell, Vivek Iyer, Alejandro O. Mujica, Mark Thomas, Jennifer Harrow, Tony Cox, David Jackson, Jessica Severin, Patrick Biggs, Jun Fu, Michael Nefedov, Pieter J. de Jong, A. Francis Stewart, Allan Bradley

Nature. Author manuscript; available in PMC 2013 Feb 14.

Published in final edited form as: Nature. 2011 Jun 15; 474(7351): 337–342. Published online 2011 Jun 15. doi: 10.1038/nature10163

PMCID:: PMC3572410

Abstract Article PDF–1.1M

Select item 340819510.

Novel AKT1-GLI3-VMP1 Pathway Mediates KRAS Oncogene-induced Autophagy in Cancer Cells

Andrea E. Lo Ré, Maite G. Fernández-Barrena, Luciana L. Almada, Lisa D. Mills, Sherine F. Elsawa, George Lund, Alejandro Ropolo, Maria I. Molejon, Maria I. Vaccaro, Martin E. Fernandez-Zapico

J Biol Chem. 2012 Jul 20; 287(30): 25325–25334. Published online 2012 Apr 25. doi: 10.1074/jbc.M112.370809

PMCID:: PMC3408195

Abstract Article PDF–1.7M

Select item 317805911.

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas

Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042

PMCID:: PMC3178059

Abstract Article PDF–1.0M

Select item 304871612.

Zymophagy, a Novel Selective Autophagy Pathway Mediated by VMP1-USP9x-p62, Prevents Pancreatic Cell Death

Daniel Grasso, Alejandro Ropolo, Andrea Lo Ré, Verónica Boggio, María I. Molejón, Juan L. Iovanna, Claudio D. Gonzalez, Raúl Urrutia, María I. Vaccaro

J Biol Chem. 2011 Mar 11; 286(10): 8308–8324. Published online 2010 Dec 20. doi: 10.1074/jbc.M110.197301

PMCID:: PMC3048716

Abstract Article PDF–9.4M

Select item 301955613.

p62 targeting to the autophagosome formation site requires self-oligomerization but not LC3 binding

Eisuke Itakura, Noboru Mizushima

J Cell Biol. 2011 Jan 10; 192(1): 17–27. doi: 10.1083/jcb.201009067

PMCID:: PMC3019556

Abstract Article PDF–3.1M

Select item 301365514.

miRBase: integrating microRNA annotation and deep-sequencing data

Ana Kozomara, Sam Griffiths-Jones

Nucleic Acids Res. 2011 Jan; 39(Database issue): D152–D157. Published online 2010 Oct 30. doi: 10.1093/nar/gkq1027

PMCID:: PMC3013655

Abstract Article PDF–5.1M

Select item 255627015.

Large-scale gene trapping in C57BL/6N mouse embryonic stem cells

Gwenn M. Hansen, Diane C. Markesich, Michael B. Burnett, Qichao Zhu, Karen M. Dionne, Lizabeth J. Richter, Richard H. Finnell, Arthur T. Sands, Brian P. Zambrowicz, Alejandro Abuin

Genome Res. 2008 Oct; 18(10): 1670–1679. doi: 10.1101/gr.078352.108

PMCID:: PMC2556270

Abstract Article PDF–493K

Select item 31099216.

RIKEN Integrated Sequence Analysis (RISA) System—384-Format Sequencing Pipeline with 384 Multicapillary Sequencer

Kazuhiro Shibata, Masayoshi Itoh, Katsunori Aizawa, Sumiharu Nagaoka, Nobuya Sasaki, Piero Carninci, Hideaki Konno, Junichi Akiyama, Katsuo Nishi, Tokuji Kitsunai, Hideo Tashiro, Mari Itoh, Noriko Sumi, Yoshiyuki Ishii, Shin Nakamura, Makoto Hazama, Tsutomu Nishine, Akira Harada, Rintaro Yamamoto, Hiroyuki Matsumoto, Sumito Sakaguchi, Takashi Ikegami, Katsuya Kashiwagi, Syuji Fujiwake, Kouji Inoue, Yoshiyuki Togawa, Masaki Izawa, Eiji Ohara, Masanori Watahiki, Yuko Yoneda, Tomokazu Ishikawa, Kaori Ozawa, Takumi Tanaka, Shuji Matsuura, Jun Kawai, Yasushi Okazaki, Masami Muramatsu, Yorinao Inoue, Akira Kira, Yoshihide Hayashizaki

Genome Res. 2000 Nov; 10(11): 1757–1771. doi: 10.1101/gr.152600

PMCID:: PMC310992

Abstract Article PDF–3.4M

Select item 31098017.

Normalization and Subtraction of Cap-Trapper-Selected cDNAs to Prepare Full-Length cDNA Libraries for Rapid Discovery of New Genes

Piero Carninci, Yuko Shibata, Norihito Hayatsu, Yuichi Sugahara, Kazuhiro Shibata, Masayoshi Itoh, Hideaki Konno, Yasushi Okazaki, Masami Muramatsu, Yoshihide Hayashizaki

Genome Res. 2000 Oct; 10(10): 1617–1630. doi: 10.1101/gr.145100

PMCID:: PMC310980

Abstract Article PDF–1.4M

Select item 28355418.

Wnk1 kinase deficiency lowers blood pressure in mice: A gene-trap screen to identify potential targets for therapeutic intervention

Brian P. Zambrowicz, Alejandro Abuin, Ramiro Ramirez-Solis, Lizabeth J. Richter, James Piggott, Hector BeltrandelRio, Eric C. Buxton, Joel Edwards, Rick A. Finch, Carl J. Friddle, Anupma Gupta, Gwenn Hansen, Yi Hu, Wenhu Huang, Crystal Jaing, Billie Wayne Key, Jr., Peter Kipp, Buckley Kohlhauff, Zhi-Qing Ma, Diane Markesich, Robert Payne, David G. Potter, Ny Qian, Joseph Shaw, Jeff Schrick, Zheng-Zheng Shi, Mary Jean Sparks, Isaac Van Sligtenhorst, Peter Vogel, Wade Walke, Nianhua Xu, Qichao Zhu, Christophe Person, Arthur T. Sands

Proc Natl Acad Sci U S A. 2003 Nov 25; 100(24): 14109–14114. Published online 2003 Nov 10. doi: 10.1073/pnas.2336103100

Correction in:: Proc Natl Acad Sci U S A. 2004 Mar 23; 101(12): 4332.

PMCID:: PMC283554

Abstract Article PDF–481K

Select item 16551119.

BayGenomics: a resource of insertional mutations in mouse embryonic stem cells

Doug Stryke, Michiko Kawamoto, Conrad C. Huang, Susan J. Johns, Leslie A. King, Courtney A. Harper, Elaine C. Meng, Roy E. Lee, Alice Yee, Larry L'Italien, Pao-Tien Chuang, Stephen G. Young, William C. Skarnes, Patricia C. Babbitt, Thomas E. Ferrin

Nucleic Acids Res. 2003 Jan 1; 31(1): 278–281. doi: 10.1093/nar/gkg064

PMCID:: PMC165511

Abstract Article PDF–217K

Select item 13924120.

Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences

Mammalian Gene Collection (MGC) Program Team

Proc Natl Acad Sci U S A. 2002 Dec 24; 99(26): 16899–16903. Published online 2002 Dec 11. doi: 10.1073/pnas.242603899

PMCID:: PMC139241

Abstract Article PDF–118K

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