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Items: 1 to 20 of 27

1.
ADARs regulate cuticle collagen expression and promote survival to pathogen infection
Alfa Dhakal, Chinnu Salim, Mary Skelly, Yarden Amichan, Ayelet T. Lamm, Heather A. Hundley
BMC Biol. 2024; 22: 37. Published online 2024 Feb 16. doi: 10.1186/s12915-024-01840-1
PMCID:
PMC10870475
AbstractArticlePDF–2.7M
2.
Amino acid and protein specificity of protein fatty acylation in C. elegans
Bingsen Zhang, Yan Yu, Bennett W. Fox, Yinong Liu, Venkatesh P. Thirumalaikumar, Aleksandra Skirycz, Hening Lin, Frank C. Schroeder
Proc Natl Acad Sci U S A. 2024 Jan 30; 121(5): e2307515121. Published online 2024 Jan 22. doi: 10.1073/pnas.2307515121
PMCID:
PMC10835129
AbstractArticlePDF–1.4M
3.
ADAR-mediated regulation of PQM-1 expression in neurons impacts gene expression throughout C. elegans and regulates survival from hypoxia
Ananya Mahapatra, Alfa Dhakal, Aika Noguchi, Pranathi Vadlamani, Heather A. Hundley
PLoS Biol. 2023 Sep; 21(9): e3002150. Published online 2023 Sep 25. doi: 10.1371/journal.pbio.3002150
PMCID:
PMC10553819
AbstractArticlePDF–1.7M
4.
Attenuation of Dopaminergic Neurodegeneration in a C. elegans Parkinson’s Model through Regulation of Xanthine Dehydrogenase (XDH-1) Expression by the RNA Editase, ADR-2
Lindsey A. Starr, Luke E. McKay, Kylie N. Peter, Lena M. Seyfarth, Laura A. Berkowitz, Kim A. Caldwell, Guy A. Caldwell
J Dev Biol. 2023 Jun; 11(2): 20. Published online 2023 May 22. doi: 10.3390/jdb11020020
PMCID:
PMC10204437
AbstractArticlePDF–4.4M
5.
Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules
Patricia Giselle Cipriani, Olivia Bay, John Zinno, Michelle Gutwein, Hin Hark Gan, Vinay K Mayya, George Chung, Jia-Xuan Chen, Hala Fahs, Yu Guan, Thomas F Duchaine, Matthias Selbach, Fabio Piano, Kristin C Gunsalus
eLife. 2021; 10: e60833. Published online 2021 Jul 5. doi: 10.7554/eLife.60833
PMCID:
PMC8331183
AbstractArticlePDF–8.5M
6.
Disruption in A-to-I Editing Levels Affects C. elegans Development More Than a Complete Lack of Editing
Nabeel S. Ganem, Noa Ben-Asher, Aidan C. Manning, Sarah N. Deffit, Michael C. Washburn, Emily C. Wheeler, Gene W. Yeo, Orna Ben-Naim Zgayer, Einav Mantsur, Heather A. Hundley, Ayelet T. Lamm
Cell Rep. Author manuscript; available in PMC 2021 May 21.
Published in final edited form as: Cell Rep. 2019 Apr 23; 27(4): 1244–1253.e4. doi: 10.1016/j.celrep.2019.03.095
PMCID:
PMC8139731
AbstractArticlePDF–1.3M
7.
EPIC: Software Toolkit for Elution Profile-Based Inference of Protein Complexes
Lucas ZhongMing Hu, Florian Goebels, June H. Tan, Eric Wolf, Uros Kuzmanov, Cuihong Wan, Sadhna Phanse, Changjiang Xu, Mike Schertzberg, Andrew G. Fraser, Gary D. Bader, Andrew Emili
Nat Methods. Author manuscript; available in PMC 2021 Mar 26.
Published in final edited form as: Nat Methods. 2019 Aug; 16(8): 737–742. Published online 2019 Jul 15. doi: 10.1038/s41592-019-0461-4
PMCID:
PMC7995176
AbstractArticlePDF–1.0M
8.
Profiling neural editomes reveals a molecular mechanism to regulate RNA editing during development
Suba Rajendren, Alfa Dhakal, Pranathi Vadlamani, Jack Townsend, Sarah N. Deffit, Heather A. Hundley
Genome Res. 2021 Jan; 31(1): 27–39. doi: 10.1101/gr.267575.120
PMCID:
PMC7849389
AbstractArticlePDF–4.4M
9.
Caenorhabditis elegans ADAR editing and the ERI-6/7/MOV10 RNAi pathway silence endogenous viral elements and LTR retrotransposons
Sylvia E. J. Fischer, Gary Ruvkun
Proc Natl Acad Sci U S A. 2020 Mar 17; 117(11): 5987–5996. Published online 2020 Mar 2. doi: 10.1073/pnas.1919028117
PMCID:
PMC7084138
AbstractArticlePDF–1.0M
10.
OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes
Woojin Kim, Ryan S. Underwood, Iva Greenwald, Daniel D. Shaye
Genetics. 2018 Oct; 210(2): 445–461. Published online 2018 Aug 17. doi: 10.1534/genetics.118.301307
PMCID:
PMC6216590
AbstractArticlePDF–1.4M
11.
A protein–protein interaction underlies the molecular basis for substrate recognition by an adenosine-to-inosine RNA-editing enzyme
Suba Rajendren, Aidan C Manning, Haider Al-Awadi, Kentaro Yamada, Yuichiro Takagi, Heather A Hundley
Nucleic Acids Res. 2018 Oct 12; 46(18): 9647–9659. Published online 2018 Sep 7. doi: 10.1093/nar/gky800
PMCID:
PMC6182170
AbstractArticlePDF–2.2M
12.
The C. elegans neural editome reveals an ADAR target mRNA required for proper chemotaxis
Sarah N Deffit, Brian A Yee, Aidan C Manning, Suba Rajendren, Pranathi Vadlamani, Emily C Wheeler, Alain Domissy, Michael C Washburn, Gene W Yeo, Heather A Hundley
eLife. 2017; 6: e28625. Published online 2017 Sep 19. doi: 10.7554/eLife.28625
PMCID:
PMC5644944
AbstractArticlePDF–3.4M
13.
Trans and cis factors affecting A-to-I RNA editing efficiency of a noncoding editing target in C. elegans
Michael C. Washburn, Heather A. Hundley
RNA. 2016 May; 22(5): 722–728. doi: 10.1261/rna.055079.115
PMCID:
PMC4836646
AbstractArticlePDF–455K
14.
A-to-I editing of coding and non-coding RNAs by ADARs
Kazuko Nishikura
Nat Rev Mol Cell Biol. Author manuscript; available in PMC 2016 Apr 7.
Published in final edited form as: Nat Rev Mol Cell Biol. 2016 Feb; 17(2): 83–96. Published online 2015 Dec 9. doi: 10.1038/nrm.2015.4
PMCID:
PMC4824625
AbstractArticlePDF–1.4M
15.
Profiling the RNA editomes of wild-type C. elegans and ADAR mutants
Han-Qing Zhao, Pan Zhang, Hua Gao, Xiandong He, Yanmei Dou, August Y. Huang, Xi-Ming Liu, Adam Y. Ye, Meng-Qiu Dong, Liping Wei
Genome Res. 2015 Jan; 25(1): 66–75. doi: 10.1101/gr.176107.114
PMCID:
PMC4317174
AbstractArticlePDF–1.0M
16.
The dsRBP and inactive editor, ADR-1, utilizes dsRNA binding to regulate A-to-I RNA editing across the C. elegans transcriptome
Michael C. Washburn, Boyko Kakaradov, Balaji Sundararaman, Emily Wheeler, Shawn Hoon, Gene W. Yeo, Heather A. Hundley
Cell Rep. Author manuscript; available in PMC 2015 Feb 27.
Published in final edited form as: Cell Rep. 2014 Feb 27; 6(4): 599–607. Published online 2014 Feb 6. doi: 10.1016/j.celrep.2014.01.011
PMCID:
PMC3959997
AbstractArticlePDF–1.2M
17.
Effects of ADARs on small RNA processing pathways in C. elegans
M. Bryan Warf, Brent A. Shepherd, W. Evan Johnson, Brenda L. Bass
Genome Res. 2012 Aug; 22(8): 1488–1498. doi: 10.1101/gr.134841.111
PMCID:
PMC3409262
AbstractArticlePDF–2.0M
18.
OrthoList: A Compendium of C. elegans Genes with Human Orthologs
Daniel D. Shaye, Iva Greenwald
PLoS One. 2011; 6(5): e20085. Published online 2011 May 25. doi: 10.1371/journal.pone.0020085
Correction in:
PLoS One. 2014; 9(1): 10.1371/annotation/f5ffb738-a176-4a43-b0e0-249cdea45fe0.
PMCID:
PMC3102077
AbstractArticlePDF–530K
19.
RNA Editing Genes Associated with Extreme Old Age in Humans and with Lifespan in C. elegans
Paola Sebastiani, Monty Montano, Annibale Puca, Nadia Solovieff, Toshio Kojima, Meng C. Wang, Efthymia Melista, Micah Meltzer, Sylvia E. J. Fischer, Stacy Andersen, Stephen H. Hartley, Amanda Sedgewick, Yasumichi Arai, Aviv Bergman, Nir Barzilai, Dellara F. Terry, Alberto Riva, Chiara Viviani Anselmi, Alberto Malovini, Aya Kitamoto, Motoji Sawabe, Tomio Arai, Yasuyuki Gondo, Martin H. Steinberg, Nobuyoshi Hirose, Gil Atzmon, Gary Ruvkun, Clinton T. Baldwin, Thomas T. Perls
PLoS One. 2009; 4(12): e8210. Published online 2009 Dec 14. doi: 10.1371/journal.pone.0008210
Correction in:
PLoS One. 2009; 4(12): 10.1371/annotation/387f8074-5f80-4bdd-bb0b-b36d49a16ac0.
PMCID:
PMC2788130
AbstractArticlePDF–614K
20.
Trans-splicing in C. elegans generates the negative RNAi regulator ERI-6/7
Sylvia E. J. Fischer, Maurice D. Butler, Qi Pan, Gary Ruvkun
Nature. Author manuscript; available in PMC 2009 Oct 2.
Published in final edited form as: Nature. 2008 Sep 25; 455(7212): 491–496. Published online 2008 Sep 10. doi: 10.1038/nature07274
PMCID:
PMC2756026
AbstractArticlePDF–1.1M

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