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Select item 85055121.

Structural mechanism of GTPase-powered ribosome-tRNA movement

Valentyn Petrychenko, Bee-Zen Peng, Ana C. de A. P. Schwarzer, Frank Peske, Marina V. Rodnina, Niels Fischer

Nat Commun. 2021; 12: 5933. Published online 2021 Oct 11. doi: 10.1038/s41467-021-26133-x

PMCID:: PMC8505512

Abstract Article PDF–3.9M

Select item 77496372.

Mutations in domain IV of elongation factor EF-G confer −1 frameshifting

Dustin Niblett, Charlotte Nelson, Calvin S. Leung, Gillian Rexroad, Jake Cozy, Jie Zhou, Laura Lancaster, Harry F. Noller

RNA. 2021 Jan; 27(1): 40–53. doi: 10.1261/rna.077339.120

PMCID:: PMC7749637

Abstract Article PDF–4.6M

Select item 63668613.

Affinity-based capture and identification of protein effectors of the growth regulator ppGpp

Boyuan Wang, Peng Dai, David Ding, Amanda Del Rosario, Robert A. Grant, Bradley L. Pentelute, Michael T. Laub

Nat Chem Biol. Author manuscript; available in PMC 2019 Jun 17.

Published in final edited form as: Nat Chem Biol. 2019 Feb; 15(2): 141–150. Published online 2018 Dec 17. doi: 10.1038/s41589-018-0183-4

Correction in:: Nat Chem Biol. 2019 May 10

PMCID:: PMC6366861

Abstract Article PDF–2.2M

Select item 57144924.

Modulation of Global Transcriptional Regulatory Networks as a Strategy for Increasing Kanamycin Resistance of the Translational Elongation Factor-G Mutants in Escherichia coli

Aalap Mogre, Reshma T. Veetil, Aswin Sai Narain Seshasayee

G3 (Bethesda) 2017 Dec; 7(12): 3955–3966. Published online 2017 Oct 18. doi: 10.1534/g3.117.300284

PMCID:: PMC5714492

Abstract Article PDF–1.6M

Select item 54545335.

Optimized fragmentation schemes and data analysis strategies for proteome-wide cross-link identification

Fan Liu, Philip Lössl, Richard Scheltema, Rosa Viner, Albert J. R. Heck

Nat Commun. 2017; 8: 15473. Published online 2017 May 19. doi: 10.1038/ncomms15473

PMCID:: PMC5454533

Abstract Article PDF–1.5M

Select item 42749446.

Control of ribosomal subunit rotation by elongation factor G

Arto Pulk, Jamie H. D. Cate

Science. Author manuscript; available in PMC 2014 Dec 23.

Published in final edited form as: Science. 2013 Jun 28; 340(6140): 1235970. doi: 10.1126/science.1235970

PMCID:: PMC4274944

Abstract Article PDF–2.7M

Select item 41238557.

The binary protein-protein interaction landscape of Escherichia coli

Seesandra V. Rajagopala, Patricia Sikorski, Ashwani Kumar, Roberto Mosca, James Vlasblom, Roland Arnold, Jonathan Franca-Koh, Suman B. Pakala, Sadhna Phanse, Arnaud Ceol, Roman Häuser, Gabriella Siszler, Stefan Wuchty, Andrew Emili, Mohan Babu, Patrick Aloy, Rembert Pieper, Peter Uetz

Nat Biotechnol. Author manuscript; available in PMC 2014 Sep 1.

Published in final edited form as: Nat Biotechnol. 2014 Mar; 32(3): 285–290. Published online 2014 Feb 23. doi: 10.1038/nbt.2831

PMCID:: PMC4123855

Abstract Article PDF–1.1M

Select item 38832228.

Coordinated conformational and compositional dynamics drive ribosome translocation

Jin Chen, Alexey Petrov, Albert Tsai, Seán E. O’Leary, Joseph D. Puglisi

Nat Struct Mol Biol. Author manuscript; available in PMC 2014 Jan 7.

Published in final edited form as: Nat Struct Mol Biol. 2013 Jun; 20(6): 718–727. Published online 2013 Apr 28. doi: 10.1038/nsmb.2567

PMCID:: PMC3883222

Abstract Article PDF–2.8M

Select item 31222269.

A Central Interdomain Protein Joint in Elongation Factor G Regulates Antibiotic Sensitivity, GTP Hydrolysis, and Ribosome Translocation

Cristina Ticu, Marat Murataliev, Roxana Nechifor, Kevin S. Wilson

J Biol Chem. 2011 Jun 17; 286(24): 21697–21705. Published online 2011 Apr 29. doi: 10.1074/jbc.M110.214056

PMCID:: PMC3122226

Abstract Article PDF–1.4M

Select item 271828910.

Conformational changes in switch I of EF-G drive its directional cycling on and off the ribosome

Cristina Ticu, Roxana Nechifor, Boray Nguyen, Melanie Desrosiers, Kevin S Wilson

EMBO J. 2009 Jul 22; 28(14): 2053–2065. Published online 2009 Jun 18. doi: 10.1038/emboj.2009.169

PMCID:: PMC2718289

Abstract Article PDF–1.6M

Select item 256307511.

Irreversible chemical steps control intersubunit dynamics during translation

R. Andrew Marshall, Magdalena Dorywalska, Joseph D. Puglisi

Proc Natl Acad Sci U S A. 2008 Oct 7; 105(40): 15364–15369. Published online 2008 Sep 29. doi: 10.1073/pnas.0805299105

PMCID:: PMC2563075

Abstract Article PDF–836K

Select item 229217712.

Protein abundance profiling of the Escherichia coli cytosol

Yasushi Ishihama, Thorsten Schmidt, Juri Rappsilber, Matthias Mann, F Ulrich Hartl, Michael J Kerner, Dmitrij Frishman

BMC Genomics. 2008; 9: 102. Published online 2008 Feb 27. doi: 10.1186/1471-2164-9-102

PMCID:: PMC2292177

Abstract Article PDF–1.0M

Select item 195076313.

Elongation factor G stabilizes the hybrid-state conformation of the 70S ribosome

P. Clint Spiegel, Dmitri N. Ermolenko, Harry F. Noller

RNA. 2007 Sep; 13(9): 1473–1482. doi: 10.1261/rna.601507

PMCID:: PMC1950763

Abstract Article PDF–586K

Select item 168148214.

Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection

Tomoya Baba, Takeshi Ara, Miki Hasegawa, Yuki Takai, Yoshiko Okumura, Miki Baba, Kirill A Datsenko, Masaru Tomita, Barry L Wanner, Hirotada Mori

Mol Syst Biol. 2006; 2: 2006.0008. Published online 2006 Feb 21. doi: 10.1038/msb4100050

PMCID:: PMC1681482

Abstract Article PDF–400K

Select item 168148115.

Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110

Koji Hayashi, Naoki Morooka, Yoshihiro Yamamoto, Katsutoshi Fujita, Katsumi Isono, Sunju Choi, Eiichi Ohtsubo, Tomoya Baba, Barry L Wanner, Hirotada Mori, Takashi Horiuchi

Mol Syst Biol. 2006; 2: 2006.0007. Published online 2006 Feb 21. doi: 10.1038/msb4100049

PMCID:: PMC1681481

Abstract Article PDF–141K

Select item 145705216.

Large-scale identification of protein–protein interaction of Escherichia coli K-12

Mohammad Arifuzzaman, Maki Maeda, Aya Itoh, Kensaku Nishikata, Chiharu Takita, Rintaro Saito, Takeshi Ara, Kenji Nakahigashi, Hsuan-Cheng Huang, Aki Hirai, Kohei Tsuzuki, Seira Nakamura, Mohammad Altaf-Ul-Amin, Taku Oshima, Tomoya Baba, Natsuko Yamamoto, Tomoyo Kawamura, Tomoko Ioka-Nakamichi, Masanari Kitagawa, Masaru Tomita, Shigehiko Kanaya, Chieko Wada, Hirotada Mori

Genome Res. 2006 May; 16(5): 686–691. doi: 10.1101/gr.4527806

PMCID:: PMC1457052

Abstract Article PDF–536K

Select item 137056717.

Conserved but nonessential interaction of SRP RNA with translation factor EF-G

MADI BIDYA SAGAR, LOUISE LUCAST, JENNIFER A. DOUDNA

RNA. 2004 May; 10(5): 772–778. doi: 10.1261/rna.5266504

PMCID:: PMC1370567

Abstract Article PDF–134K

Select item 135632518.

Control of phosphate release from elongation factor G by ribosomal protein L7/12

Andreas Savelsbergh, Dagmar Mohr, Ute Kothe, Wolfgang Wintermeyer, Marina V Rodnina

EMBO J. 2005 Dec 21; 24(24): 4316–4323. Published online 2005 Nov 17. doi: 10.1038/sj.emboj.7600884

PMCID:: PMC1356325

Abstract Article PDF–210K

Select item 132520019.

Escherichia coli K-12: a cooperatively developed annotation snapshot—2005

Monica Riley, Takashi Abe, Martha B. Arnaud, Mary K.B. Berlyn, Frederick R. Blattner, Roy R. Chaudhuri, Jeremy D. Glasner, Takashi Horiuchi, Ingrid M. Keseler, Takehide Kosuge, Hirotada Mori, Nicole T. Perna, Guy Plunkett, III, Kenneth E. Rudd, Margrethe H. Serres, Gavin H. Thomas, Nicholas R. Thomson, David Wishart, Barry L. Wanner

Nucleic Acids Res. 2006; 34(1): 1–9. Published online 2006 Jan 5. doi: 10.1093/nar/gkj405

PMCID:: PMC1325200

Abstract Article PDF–204K

Select item 126606620.

Function of the ribosomal E-site: a mutagenesis study

Petr V. Sergiev, Dmitry V. Lesnyak, Sergey V. Kiparisov, Dmitry E. Burakovsky, Andrei A. Leonov, Alexey A. Bogdanov, Richard Brimacombe, Olga A. Dontsova

Nucleic Acids Res. 2005; 33(18): 6048–6056. Published online 2005 Oct 20. doi: 10.1093/nar/gki910